Wall clock time and date at job start Fri Apr 10 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47331 * 2 1 4 4 C 1.50697 * 109.46731 * 119.99996 * 2 1 3 5 5 H 1.08001 * 120.00556 * 122.07762 * 4 2 1 6 6 C 1.37878 * 120.00333 * 302.34565 * 4 2 1 7 7 N 1.31519 * 119.99805 * 353.19399 * 6 4 2 8 8 Si 1.86803 * 120.00590 * 173.19182 * 6 4 2 9 9 H 1.48507 * 109.46744 * 94.99013 * 8 6 4 10 10 H 1.48496 * 109.47193 * 214.99053 * 8 6 4 11 11 H 1.48497 * 109.46698 * 334.99290 * 8 6 4 12 12 C 1.53003 * 109.47121 * 239.99515 * 2 1 3 13 13 N 1.46500 * 109.46780 * 60.00529 * 12 2 1 14 14 C 1.34773 * 119.99662 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99807 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00258 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47561 * 180.02562 * 17 16 14 19 19 H 1.09005 * 110.29614 * 305.70442 * 18 17 16 20 20 C 1.54539 * 110.33649 * 183.55190 * 18 17 16 21 21 C 1.54719 * 104.07450 * 217.44631 * 20 18 17 22 22 C 1.53562 * 103.75097 * 0.69999 * 21 20 18 23 23 C 1.52810 * 115.45768 * 253.20494 * 22 21 20 24 24 C 1.53966 * 86.78746 * 217.65661 * 23 22 21 25 25 C 1.52799 * 115.48657 * 152.49424 * 22 21 20 26 26 O 1.43448 * 106.19802 * 22.75078 * 22 21 20 27 27 H 1.09001 * 109.46903 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.46580 * 59.99956 * 1 2 3 29 29 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47284 * 174.13051 * 3 2 1 31 31 H 1.09003 * 109.47265 * 294.13075 * 3 2 1 32 32 H 1.09000 * 109.47286 * 54.12771 * 3 2 1 33 33 H 0.96999 * 120.00151 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47033 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47377 * 300.00119 * 12 2 1 36 36 H 0.96999 * 120.00277 * 359.97438 * 13 12 2 37 37 H 0.96999 * 120.00132 * 0.02562 * 16 14 13 38 38 H 1.08999 * 109.47184 * 300.00184 * 17 16 14 39 39 H 1.09007 * 109.46778 * 60.00077 * 17 16 14 40 40 H 1.09001 * 110.50735 * 336.09974 * 20 18 17 41 41 H 1.09000 * 110.51158 * 98.66569 * 20 18 17 42 42 H 1.09000 * 110.56653 * 119.26085 * 21 20 18 43 43 H 1.08994 * 110.57462 * 241.97996 * 21 20 18 44 44 H 1.08996 * 113.66719 * 332.12692 * 23 22 21 45 45 H 1.08994 * 113.66542 * 103.18884 * 23 22 21 46 46 H 1.08999 * 113.58236 * 270.12653 * 24 23 22 47 47 H 1.08996 * 113.58463 * 139.30542 * 24 23 22 48 48 H 1.08997 * 113.66094 * 256.79042 * 25 22 21 49 49 H 1.09000 * 113.66183 * 27.84349 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6805 -1.5686 1.1319 6 6 1.6597 -0.2683 2.4822 7 7 0.9778 0.8492 2.6088 8 14 2.1233 -1.2564 3.9982 9 1 3.3833 -0.7198 4.5725 10 1 1.0374 -1.1553 5.0061 11 1 2.3178 -2.6794 3.6210 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8778 -0.4910 -3.6694 15 8 2.5775 -1.4790 -3.7809 16 7 1.4282 0.1441 -4.7699 17 6 1.7830 -0.3558 -6.1005 18 6 1.1497 0.5395 -7.1673 19 1 0.0750 0.6204 -7.0037 20 6 1.4374 -0.0208 -8.5786 21 6 1.6653 1.2406 -9.4450 22 6 1.5057 2.4000 -8.4508 23 6 0.2154 3.2075 -8.5850 24 6 1.0622 4.4515 -8.2599 25 6 2.2775 3.6728 -8.7957 26 8 1.7606 1.8502 -7.1506 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1249 1.4442 0.1051 31 1 1.7651 1.9251 -0.9379 32 1 1.5934 1.9858 0.8327 33 1 0.7161 1.1605 3.4894 34 1 3.1300 -0.7218 -1.2490 35 1 1.6767 -1.7490 -1.2492 36 1 0.9938 0.7578 -2.3564 37 1 0.8702 0.9326 -4.6809 38 1 2.8669 -0.3460 -6.2152 39 1 1.4146 -1.3753 -6.2158 40 1 2.3321 -0.6432 -8.5672 41 1 0.5826 -0.5892 -8.9454 42 1 2.6687 1.2365 -9.8706 43 1 0.9160 1.3038 -10.2340 44 1 -0.1962 3.2100 -9.5942 45 1 -0.5284 2.9735 -7.8233 46 1 1.1212 4.6726 -7.1942 47 1 0.8040 5.3239 -8.8602 48 1 3.1815 3.8106 -8.2025 49 1 2.4460 3.8062 -9.8643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883740806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:34 Heat of formation + Delta-G solvation = -83.394070 kcal Electronic energy + Delta-G solvation = -26232.739587 eV Core-core repulsion = 22580.380901 eV Total energy + Delta-G solvation = -3652.358686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58415 -40.92023 -38.34260 -37.51553 -35.37623 -34.95683 -33.18066 -32.66081 -30.12941 -27.56488 -27.45868 -26.90813 -26.61520 -25.39608 -23.11916 -22.28387 -21.82683 -20.58302 -20.22088 -19.50440 -17.77857 -17.67634 -17.21053 -16.75268 -16.58032 -16.49023 -16.05889 -15.82692 -15.23308 -15.10560 -14.78030 -14.64693 -14.46535 -14.00546 -13.91145 -13.70613 -13.31737 -13.22305 -13.06916 -13.02784 -12.69256 -12.62548 -12.58200 -12.40268 -12.23822 -12.13672 -11.84652 -11.69879 -11.47829 -11.39786 -11.35355 -11.13477 -11.04816 -10.71704 -10.49915 -10.39785 -10.30339 -9.66136 -8.02683 -6.16636 1.42497 1.45595 1.54826 1.79602 2.20038 2.46893 2.67741 3.21296 3.39959 3.48989 3.61794 3.69791 3.91207 3.99781 4.02607 4.12947 4.24102 4.42154 4.45890 4.51896 4.54007 4.65967 4.71885 4.80279 4.84796 4.86523 4.98111 5.00346 5.03610 5.06075 5.06871 5.11003 5.15027 5.18158 5.20086 5.33926 5.38334 5.43425 5.49441 5.63337 5.66743 5.69030 6.04289 6.05702 6.14034 6.21528 6.43638 6.87166 7.14679 7.50389 7.62759 8.97241 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026763 B = 0.002450 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.976122 B =11423.638346 C =12056.756987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.530 4.530 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.642 6.642 16 N -0.732 5.732 17 C 0.147 3.853 18 C 0.070 3.930 19 H 0.089 0.911 20 C -0.145 4.145 21 C -0.133 4.133 22 C 0.066 3.934 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.130 4.130 26 O -0.368 6.368 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.020 0.980 30 H 0.015 0.985 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.037 0.963 36 H 0.405 0.595 37 H 0.409 0.591 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.060 0.940 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 6.234 -27.003 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.175 4.175 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.043 3.957 13 N -0.382 5.382 14 C 0.396 3.604 15 O -0.525 6.525 16 N -0.388 5.388 17 C 0.023 3.977 18 C 0.012 3.988 19 H 0.106 0.894 20 C -0.183 4.183 21 C -0.171 4.171 22 C 0.027 3.973 23 C -0.186 4.186 24 C -0.177 4.177 25 C -0.167 4.167 26 O -0.288 6.288 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.241 0.759 37 H 0.244 0.756 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.118 0.882 44 H 0.128 0.872 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.101 0.899 48 H 0.079 0.921 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.579 5.549 -26.774 27.576 hybrid contribution -0.043 0.008 1.365 1.365 sum -3.621 5.557 -25.409 26.261 Atomic orbital electron populations 1.21637 0.97026 0.98771 1.00252 1.18352 0.93286 0.92952 0.90236 1.21679 0.98238 0.98037 0.99544 1.21264 1.30220 1.13817 0.91567 0.93712 1.25458 0.95128 0.95601 1.00914 1.69945 1.39317 1.20889 1.23601 0.85749 0.77769 0.79355 0.79962 1.20627 1.20652 1.20011 1.21113 0.96602 0.94737 0.83208 1.45210 1.55825 1.33196 1.03938 1.16188 0.80185 0.82692 0.81342 1.90848 1.44997 1.29895 1.86763 1.44904 1.56581 1.33119 1.04243 1.21326 0.99815 0.97260 0.79331 1.23303 0.97484 0.82819 0.95168 0.89355 1.22945 1.04010 0.98692 0.92655 1.22759 1.03817 0.92495 0.98024 1.22916 0.97436 0.93827 0.83127 1.23360 0.96140 0.95831 1.03304 1.22835 0.96243 0.97612 1.01025 1.22993 0.97688 0.93493 1.02517 1.89038 1.76917 1.30039 1.32773 0.92174 0.94386 0.96052 0.96589 0.94779 0.91815 0.93030 0.94874 0.94460 0.75884 0.75578 0.92821 0.90047 0.90433 0.88106 0.90224 0.88209 0.87199 0.91479 0.91491 0.89930 0.92107 0.86800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.05 71.98 0.58 -4.79 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 3 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 4 C -0.53 -28.68 8.01 25.60 0.20 -28.47 16 5 H 0.04 2.47 7.75 -2.91 -0.02 2.45 16 6 C 0.03 1.55 5.12 84.65 0.43 1.98 16 7 N -0.90 -48.63 9.47 21.45 0.20 -48.43 16 8 Si 0.94 43.21 29.54 68.60 2.03 45.24 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 C 0.17 7.51 4.50 86.38 0.39 7.90 16 13 N -0.73 -26.85 4.91 -478.54 -2.35 -29.20 16 14 C 0.70 25.83 8.57 179.06 1.53 27.36 16 15 O -0.64 -29.30 16.34 -3.99 -0.07 -29.37 16 16 N -0.73 -19.99 5.55 -478.53 -2.66 -22.65 16 17 C 0.15 3.44 5.27 86.38 0.46 3.89 16 18 C 0.07 1.19 3.32 31.12 0.10 1.29 16 19 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 20 C -0.14 -1.75 6.65 31.70 0.21 -1.54 16 21 C -0.13 -1.42 6.48 31.37 0.20 -1.22 16 22 C 0.07 0.97 1.13 -10.74 -0.01 0.96 16 23 C -0.15 -1.75 7.57 30.86 0.23 -1.52 16 24 C -0.14 -1.84 8.09 31.24 0.25 -1.59 16 25 C -0.13 -1.74 7.61 30.85 0.23 -1.50 16 26 O -0.37 -7.66 11.12 -148.98 -1.66 -9.32 16 27 H 0.06 2.99 6.16 -2.39 -0.01 2.98 16 28 H 0.04 1.44 6.86 -2.39 -0.02 1.42 16 29 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.03 1.32 6.72 -2.39 -0.02 1.31 16 32 H 0.06 3.21 6.20 -2.39 -0.01 3.20 16 33 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.40 13.03 6.17 -92.71 -0.57 12.46 16 37 H 0.41 9.20 8.49 -92.71 -0.79 8.41 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.08 1.01 7.87 -2.39 -0.02 0.99 16 41 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 43 H 0.10 0.65 7.85 -2.39 -0.02 0.63 16 44 H 0.11 0.82 7.97 -2.39 -0.02 0.80 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -66.15 381.52 0.46 -65.70 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.42 Total: 27.63 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.38 Total: 0.40 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -4.80 Total: -100.28 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.72 Total: -38.69 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.15 0.46 -65.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883740806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.697 kcal (2) G-P(sol) polarization free energy of solvation -66.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds