Wall clock time and date at job start Fri Apr 10 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 C 1.50700 * 109.47212 * 239.99864 * 2 1 3 5 5 H 1.07999 * 120.00391 * 240.00651 * 4 2 1 6 6 C 1.37877 * 119.99914 * 60.00152 * 4 2 1 7 7 N 1.31515 * 120.00291 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99960 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47425 * 59.99992 * 8 6 4 10 10 H 1.48499 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47012 * 299.99952 * 8 6 4 12 12 C 1.53000 * 109.47151 * 120.00030 * 2 1 3 13 13 N 1.46497 * 109.47175 * 300.00129 * 12 2 1 14 14 C 1.34776 * 120.00184 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00044 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00044 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99898 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46724 * 179.97438 * 17 16 14 19 19 H 1.08991 * 110.24504 * 57.99544 * 18 17 16 20 20 C 1.55197 * 110.27282 * 180.02562 * 18 17 16 21 21 C 1.54015 * 100.75022 * 154.19023 * 20 18 17 22 22 C 1.52400 * 115.94051 * 198.15276 * 21 20 18 23 23 C 1.54037 * 86.64359 * 217.07550 * 22 21 20 24 24 C 1.52407 * 115.91490 * 96.33784 * 21 20 18 25 25 C 1.53084 * 103.78691 * 327.26737 * 21 20 18 26 26 O 1.43589 * 107.17288 * 19.98626 * 25 21 20 27 27 H 1.08996 * 109.46987 * 300.00344 * 1 2 3 28 28 H 1.09000 * 109.47021 * 60.00290 * 1 2 3 29 29 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47001 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46950 * 299.99754 * 3 2 1 32 32 H 1.09001 * 109.47262 * 60.00373 * 3 2 1 33 33 H 0.97000 * 120.00574 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47324 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.47285 * 59.99863 * 12 2 1 36 36 H 0.96999 * 119.99880 * 359.97438 * 13 12 2 37 37 H 0.96999 * 120.00020 * 0.02562 * 16 14 13 38 38 H 1.09001 * 109.46917 * 60.00249 * 17 16 14 39 39 H 1.08991 * 109.47047 * 300.00182 * 17 16 14 40 40 H 1.09001 * 111.15427 * 272.05986 * 20 18 17 41 41 H 1.08991 * 111.16353 * 36.31405 * 20 18 17 42 42 H 1.08997 * 113.68237 * 331.50612 * 22 21 20 43 43 H 1.08997 * 113.68119 * 102.63553 * 22 21 20 44 44 H 1.09004 * 113.56749 * 269.77198 * 23 22 21 45 45 H 1.08993 * 113.57431 * 139.01389 * 23 22 21 46 46 H 1.09000 * 113.68654 * 257.38090 * 24 21 20 47 47 H 1.08997 * 113.68926 * 28.41944 * 24 21 20 48 48 H 1.09003 * 109.89839 * 260.59521 * 25 21 20 49 49 H 1.09005 * 109.89685 * 139.37271 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0078 10 1 1.8270 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5759 -1.4800 3.7811 16 7 1.4280 0.1442 4.7700 17 6 1.7819 -0.3563 6.1005 18 6 1.1496 0.5400 7.1673 19 1 0.0674 0.5694 7.0420 20 6 1.5136 0.0263 8.5858 21 6 1.4011 1.3285 9.4005 22 6 2.0932 1.3274 10.7583 23 6 0.9045 2.1666 11.2637 24 6 0.0761 1.5517 10.1199 25 6 1.8341 2.4152 8.4131 26 8 1.6959 1.8678 7.0928 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -1.7490 1.2493 36 1 0.9943 0.7582 2.3564 37 1 0.8706 0.9331 4.6810 38 1 2.8658 -0.3480 6.2154 39 1 1.4121 -1.3751 6.2157 40 1 0.7954 -0.7173 8.9313 41 1 2.5293 -0.3682 8.6129 42 1 2.1581 0.3403 11.2158 43 1 3.0424 1.8632 10.7662 44 1 1.0559 3.2414 11.1633 45 1 0.5584 1.8786 12.2563 46 1 -0.5785 2.2659 9.6204 47 1 -0.4342 0.6285 10.3942 48 1 2.8736 2.6885 8.5945 49 1 1.1936 3.2907 8.5206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:37 Heat of formation + Delta-G solvation = -66.783797 kcal Electronic energy + Delta-G solvation = -25986.770665 eV Core-core repulsion = 22335.132255 eV Total energy + Delta-G solvation = -3651.638410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03145 -39.44599 -37.50197 -36.38510 -34.37222 -33.17115 -31.49684 -30.63793 -28.96502 -26.32948 -26.08755 -25.65732 -25.33816 -24.32713 -22.85987 -21.61865 -20.45461 -19.07067 -18.69928 -17.98626 -16.92989 -16.25444 -15.89549 -15.75308 -15.47563 -15.12126 -14.83443 -14.66914 -14.34128 -13.82990 -13.57296 -13.51090 -13.08184 -12.97092 -12.79869 -12.45580 -12.43647 -12.11476 -12.04239 -11.73369 -11.54860 -11.30734 -11.13495 -10.84060 -10.79218 -10.71475 -10.68700 -10.61179 -10.31669 -10.16024 -9.79805 -9.69170 -9.56269 -9.24184 -8.88105 -8.73755 -8.35664 -8.09398 -5.96940 -4.06722 3.11194 3.33767 3.37651 3.41628 3.50848 3.75088 3.82599 3.97047 4.19977 4.33915 4.42917 4.53670 4.67322 4.78774 4.82734 4.91985 5.12371 5.22326 5.25689 5.29514 5.33391 5.36224 5.41523 5.44226 5.49151 5.57351 5.68972 5.79098 5.88850 5.91907 6.28785 6.43889 6.57667 6.65285 6.78851 6.87341 6.90269 6.98710 7.10032 7.18776 7.39416 7.50745 7.62343 7.74982 8.07386 8.18602 8.44363 8.58672 8.93003 9.14500 9.58562 11.04421 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.041436 B = 0.002161 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.571351 B =12952.177558 C =13221.299526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.733 5.733 14 C 0.698 3.302 15 O -0.603 6.603 16 N -0.749 5.749 17 C 0.145 3.855 18 C 0.071 3.929 19 H 0.077 0.923 20 C -0.134 4.134 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.127 4.127 25 C 0.076 3.924 26 O -0.373 6.373 27 H 0.006 0.994 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.084 0.916 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.394 0.606 37 H 0.397 0.603 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 4.226 26.585 27.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.387 5.387 14 C 0.398 3.602 15 O -0.483 6.483 16 N -0.406 5.406 17 C 0.020 3.980 18 C 0.013 3.987 19 H 0.095 0.905 20 C -0.172 4.172 21 C -0.120 4.120 22 C -0.161 4.161 23 C -0.180 4.180 24 C -0.164 4.164 25 C 0.000 4.000 26 O -0.292 6.292 27 H 0.025 0.975 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.025 0.975 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.127 3.516 26.307 26.626 hybrid contribution -0.249 0.201 -0.704 0.774 sum -2.377 3.717 25.602 25.980 Atomic orbital electron populations 1.21814 0.97801 0.99116 0.99988 1.18363 0.92790 0.92798 0.90565 1.21817 0.98579 0.98356 1.00002 1.20953 1.31392 1.12045 0.89883 0.92478 1.24885 0.94929 0.94958 0.98828 1.69799 1.36734 1.22753 1.23242 0.86628 0.79226 0.79768 0.82185 1.20308 1.21387 1.20306 1.21566 0.97853 0.95370 0.82456 1.45483 1.55680 1.32989 1.04576 1.16064 0.80483 0.82974 0.80720 1.90870 1.43245 1.27982 1.86185 1.44984 1.57680 1.33358 1.04594 1.21249 1.00400 0.96255 0.80108 1.23278 0.97842 0.82934 0.94631 0.90469 1.23066 1.03474 0.97143 0.93507 1.22482 0.98459 0.95778 0.95249 1.22707 0.97937 1.00970 0.94518 1.22932 0.96714 0.99798 0.98507 1.22810 0.95266 1.01517 0.96830 1.22743 1.01053 0.95013 0.81221 1.88570 1.84982 1.29153 1.26542 0.97520 0.89689 0.95487 0.95472 0.89686 0.97486 0.93013 0.93025 0.93029 0.77190 0.76989 0.91296 0.90649 0.89481 0.89601 0.89535 0.90960 0.90063 0.91248 0.91002 0.89594 0.90868 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 4 C -0.50 -13.47 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.98 9.35 55.43 0.52 -23.46 16 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.15 3.36 4.50 -4.04 -0.02 3.34 16 13 N -0.73 -13.94 4.96 -65.23 -0.32 -14.27 16 14 C 0.70 13.22 8.57 -86.92 -0.74 12.48 16 15 O -0.60 -13.71 16.34 5.29 0.09 -13.63 16 16 N -0.75 -10.79 5.51 -65.23 -0.36 -11.15 16 17 C 0.14 1.77 5.39 -4.04 -0.02 1.75 16 18 C 0.07 0.66 3.50 -25.57 -0.09 0.57 16 19 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.13 -0.96 5.94 -25.04 -0.15 -1.11 16 21 C -0.12 -0.78 0.92 -154.58 -0.14 -0.92 16 22 C -0.12 -0.67 7.43 -26.50 -0.20 -0.86 16 23 C -0.14 -0.70 7.99 -25.68 -0.21 -0.90 16 24 C -0.13 -0.71 7.34 -26.49 -0.19 -0.90 16 25 C 0.08 0.62 7.19 37.20 0.27 0.89 16 26 O -0.37 -4.09 11.02 -35.23 -0.39 -4.48 16 27 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 28 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 32 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.39 6.77 6.18 -40.82 -0.25 6.52 16 37 H 0.40 4.93 8.49 -40.82 -0.35 4.58 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.51 7.98 -51.93 -0.41 0.10 16 41 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.38 8.01 -51.93 -0.42 -0.04 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.42 8.03 -51.93 -0.42 0.00 16 47 H 0.09 0.43 8.03 -51.93 -0.42 0.02 16 48 H 0.07 0.57 7.98 -51.93 -0.41 0.15 16 49 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -30.53 380.59 -9.71 -40.23 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -8.62 Total: 6.91 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.34 Total: -1.93 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.16 Total: -48.88 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.30 Total: -18.11 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.53 -9.71 -40.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.550 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds