Wall clock time and date at job start Fri Apr 10 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 C 1.50700 * 109.47212 * 239.99864 * 2 1 3 5 5 H 1.07999 * 120.00391 * 240.00651 * 4 2 1 6 6 C 1.37877 * 119.99914 * 60.00152 * 4 2 1 7 7 N 1.31515 * 120.00291 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99960 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47425 * 59.99992 * 8 6 4 10 10 H 1.48499 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47012 * 299.99952 * 8 6 4 12 12 C 1.53000 * 109.47151 * 120.00030 * 2 1 3 13 13 N 1.46497 * 109.47175 * 300.00129 * 12 2 1 14 14 C 1.34776 * 120.00184 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00044 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00044 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99898 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46724 * 179.97438 * 17 16 14 19 19 H 1.08991 * 110.24504 * 57.99544 * 18 17 16 20 20 C 1.55197 * 110.27282 * 180.02562 * 18 17 16 21 21 C 1.54015 * 100.75022 * 154.19023 * 20 18 17 22 22 C 1.52400 * 115.94051 * 198.15276 * 21 20 18 23 23 C 1.54037 * 86.64359 * 217.07550 * 22 21 20 24 24 C 1.52407 * 115.91490 * 96.33784 * 21 20 18 25 25 C 1.53084 * 103.78691 * 327.26737 * 21 20 18 26 26 O 1.43589 * 107.17288 * 19.98626 * 25 21 20 27 27 H 1.08996 * 109.46987 * 300.00344 * 1 2 3 28 28 H 1.09000 * 109.47021 * 60.00290 * 1 2 3 29 29 H 1.09003 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47001 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46950 * 299.99754 * 3 2 1 32 32 H 1.09001 * 109.47262 * 60.00373 * 3 2 1 33 33 H 0.97000 * 120.00574 * 180.02562 * 7 6 4 34 34 H 1.08997 * 109.47324 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.47285 * 59.99863 * 12 2 1 36 36 H 0.96999 * 119.99880 * 359.97438 * 13 12 2 37 37 H 0.96999 * 120.00020 * 0.02562 * 16 14 13 38 38 H 1.09001 * 109.46917 * 60.00249 * 17 16 14 39 39 H 1.08991 * 109.47047 * 300.00182 * 17 16 14 40 40 H 1.09001 * 111.15427 * 272.05986 * 20 18 17 41 41 H 1.08991 * 111.16353 * 36.31405 * 20 18 17 42 42 H 1.08997 * 113.68237 * 331.50612 * 22 21 20 43 43 H 1.08997 * 113.68119 * 102.63553 * 22 21 20 44 44 H 1.09004 * 113.56749 * 269.77198 * 23 22 21 45 45 H 1.08993 * 113.57431 * 139.01389 * 23 22 21 46 46 H 1.09000 * 113.68654 * 257.38090 * 24 21 20 47 47 H 1.08997 * 113.68926 * 28.41944 * 24 21 20 48 48 H 1.09003 * 109.89839 * 260.59521 * 25 21 20 49 49 H 1.09005 * 109.89685 * 139.37271 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0078 10 1 1.8270 -0.4199 -5.2204 11 1 3.8063 -1.1210 -4.0081 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5759 -1.4800 3.7811 16 7 1.4280 0.1442 4.7700 17 6 1.7819 -0.3563 6.1005 18 6 1.1496 0.5400 7.1673 19 1 0.0674 0.5694 7.0420 20 6 1.5136 0.0263 8.5858 21 6 1.4011 1.3285 9.4005 22 6 2.0932 1.3274 10.7583 23 6 0.9045 2.1666 11.2637 24 6 0.0761 1.5517 10.1199 25 6 1.8341 2.4152 8.4131 26 8 1.6959 1.8678 7.0928 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 0.7090 1.1614 -3.4844 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -1.7490 1.2493 36 1 0.9943 0.7582 2.3564 37 1 0.8706 0.9331 4.6810 38 1 2.8658 -0.3480 6.2154 39 1 1.4121 -1.3751 6.2157 40 1 0.7954 -0.7173 8.9313 41 1 2.5293 -0.3682 8.6129 42 1 2.1581 0.3403 11.2158 43 1 3.0424 1.8632 10.7662 44 1 1.0559 3.2414 11.1633 45 1 0.5584 1.8786 12.2563 46 1 -0.5785 2.2659 9.6204 47 1 -0.4342 0.6285 10.3942 48 1 2.8736 2.6885 8.5945 49 1 1.1936 3.2907 8.5206 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:36 Heat of formation + Delta-G solvation = -85.839933 kcal Electronic energy + Delta-G solvation = -25987.597001 eV Core-core repulsion = 22335.132255 eV Total energy + Delta-G solvation = -3652.464746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.64745 -40.91631 -38.40869 -37.94591 -35.62535 -34.96419 -32.84733 -31.95701 -29.72622 -27.54859 -27.52194 -27.08983 -26.67859 -25.79241 -23.41202 -22.40933 -21.93028 -20.57483 -19.69833 -19.34615 -17.75413 -17.73084 -17.19992 -16.71920 -16.57812 -16.49088 -16.06770 -15.75726 -15.28572 -15.20805 -14.90961 -14.66790 -14.58525 -14.09494 -13.98939 -13.62436 -13.50270 -13.15537 -13.07910 -13.04235 -12.67743 -12.61835 -12.60244 -12.41935 -12.23147 -12.12233 -12.03668 -11.46818 -11.42855 -11.29568 -11.19110 -11.14064 -11.02203 -10.69610 -10.50825 -10.39663 -10.29101 -9.64187 -8.00459 -6.16120 1.45566 1.46133 1.53044 1.81167 2.21655 2.47539 2.76231 3.22791 3.29935 3.40628 3.51630 3.69844 3.94313 3.96341 4.01582 4.12311 4.29868 4.43691 4.51005 4.55185 4.64057 4.66257 4.72959 4.77297 4.84163 4.88952 4.89111 4.97259 5.00877 5.04538 5.07766 5.11473 5.12749 5.19080 5.21687 5.35138 5.39856 5.50510 5.52573 5.64694 5.68505 5.68695 6.02753 6.08103 6.16283 6.23341 6.45226 6.87711 7.16854 7.51134 7.64580 8.98388 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.041436 B = 0.002161 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.571351 B =12952.177558 C =13221.299526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.643 6.643 16 N -0.731 5.731 17 C 0.142 3.858 18 C 0.077 3.923 19 H 0.090 0.910 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.139 4.139 24 C -0.125 4.125 25 C 0.070 3.930 26 O -0.399 6.399 27 H 0.036 0.964 28 H 0.063 0.937 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.405 0.595 37 H 0.409 0.591 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 4.698 28.285 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.381 5.381 14 C 0.395 3.605 15 O -0.526 6.526 16 N -0.388 5.388 17 C 0.018 3.982 18 C 0.019 3.981 19 H 0.107 0.893 20 C -0.168 4.168 21 C -0.119 4.119 22 C -0.160 4.160 23 C -0.176 4.176 24 C -0.162 4.162 25 C -0.006 4.006 26 O -0.319 6.319 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.241 0.759 37 H 0.245 0.755 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.005 4.033 28.045 28.493 hybrid contribution 0.030 0.081 -1.180 1.183 sum -2.975 4.114 26.865 27.341 Atomic orbital electron populations 1.21653 0.97022 0.98676 1.00327 1.18366 0.93350 0.92991 0.90237 1.21663 0.97849 0.97932 1.00300 1.21231 1.31737 1.12177 0.91502 0.93691 1.25475 0.95191 0.95648 1.01007 1.69903 1.36978 1.23261 1.23651 0.85796 0.78584 0.78810 0.79482 1.20205 1.20795 1.20317 1.21126 0.96617 0.94719 0.83233 1.45199 1.55869 1.33154 1.03923 1.16202 0.80193 0.82696 0.81361 1.90844 1.45073 1.29893 1.86777 1.44888 1.56624 1.33038 1.04214 1.21422 0.99799 0.97359 0.79621 1.23259 0.97970 0.82164 0.94681 0.89262 1.23083 1.03764 0.97869 0.92087 1.22472 0.99537 0.94599 0.95291 1.22733 0.98065 1.01513 0.93691 1.22929 0.96177 0.99806 0.98733 1.22836 0.94759 1.01924 0.96731 1.22878 1.01334 0.95730 0.80625 1.88532 1.85228 1.29769 1.28348 0.94538 0.91863 0.96262 0.96445 0.91810 0.94631 0.93024 0.94813 0.94532 0.75883 0.75513 0.92875 0.90276 0.87760 0.89986 0.88821 0.91026 0.89950 0.90460 0.91258 0.88748 0.90960 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.50 8.08 71.98 0.58 -4.91 16 4 C -0.53 -28.50 8.01 25.60 0.21 -28.29 16 5 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 6 C 0.03 1.42 5.15 84.65 0.44 1.85 16 7 N -0.90 -48.59 9.35 21.45 0.20 -48.39 16 8 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C 0.17 7.51 4.50 86.38 0.39 7.90 16 13 N -0.73 -26.92 4.96 -478.54 -2.37 -29.29 16 14 C 0.70 25.87 8.57 179.05 1.53 27.41 16 15 O -0.64 -29.35 16.34 -3.99 -0.07 -29.42 16 16 N -0.73 -20.09 5.51 -478.53 -2.64 -22.73 16 17 C 0.14 3.33 5.39 86.38 0.47 3.79 16 18 C 0.08 1.30 3.50 31.35 0.11 1.41 16 19 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 20 C -0.13 -1.60 5.94 31.69 0.19 -1.41 16 21 C -0.12 -1.31 0.92 -52.23 -0.05 -1.36 16 22 C -0.12 -1.06 7.43 30.75 0.23 -0.83 16 23 C -0.14 -1.05 7.99 31.27 0.25 -0.80 16 24 C -0.13 -1.09 7.34 30.75 0.23 -0.87 16 25 C 0.07 1.04 7.19 72.01 0.52 1.56 16 26 O -0.40 -8.21 11.02 -148.98 -1.64 -9.85 16 27 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 32 H 0.03 1.38 6.86 -2.39 -0.02 1.36 16 33 H 0.26 13.56 8.31 -92.71 -0.77 12.78 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.40 13.08 6.18 -92.71 -0.57 12.51 16 37 H 0.41 9.33 8.49 -92.71 -0.79 8.54 16 38 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.10 0.94 7.98 -2.39 -0.02 0.92 16 41 H 0.08 1.08 8.05 -2.39 -0.02 1.06 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.63 8.01 -2.39 -0.02 0.62 16 44 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.07 0.65 8.03 -2.39 -0.02 0.63 16 47 H 0.09 0.68 8.03 -2.39 -0.02 0.66 16 48 H 0.07 1.05 7.98 -2.39 -0.02 1.03 16 49 H 0.08 1.01 7.88 -2.38 -0.02 0.99 16 Total: -1.00 -65.22 380.59 0.72 -64.50 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.42 Total: 26.88 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.64 Total: 3.04 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -4.81 Total: -100.41 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.71 Total: -39.27 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -65.22 0.72 -64.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.339 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds