Wall clock time and date at job start Fri Apr 10 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 C 1.50701 * 109.47068 * 240.00058 * 2 1 3 5 5 H 1.08006 * 119.99771 * 241.34446 * 4 2 1 6 6 C 1.37878 * 120.00306 * 61.34595 * 4 2 1 7 7 N 1.31513 * 120.00315 * 193.97653 * 6 4 2 8 8 Si 1.86803 * 119.99631 * 13.97525 * 6 4 2 9 9 H 1.48500 * 109.47228 * 84.55212 * 8 6 4 10 10 H 1.48496 * 109.46938 * 204.54874 * 8 6 4 11 11 H 1.48504 * 109.47264 * 324.54859 * 8 6 4 12 12 C 1.52995 * 109.47258 * 120.00081 * 2 1 3 13 13 N 1.46510 * 109.47140 * 300.00146 * 12 2 1 14 14 C 1.34773 * 119.99943 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00143 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99905 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00133 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46728 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.81195 * 305.59806 * 18 17 16 20 20 C 1.54665 * 109.81325 * 184.67580 * 18 17 16 21 21 C 1.53809 * 102.02613 * 220.44836 * 20 18 17 22 22 C 1.52225 * 116.37495 * 161.12203 * 21 20 18 23 23 C 1.54067 * 86.57809 * 94.46428 * 22 21 20 24 24 C 1.52216 * 116.37181 * 263.72988 * 21 20 18 25 25 C 1.53450 * 102.78342 * 32.42012 * 21 20 18 26 26 O 1.43349 * 109.81930 * 66.46071 * 18 17 16 27 27 H 1.08994 * 109.47469 * 309.36784 * 1 2 3 28 28 H 1.09000 * 109.47489 * 69.36899 * 1 2 3 29 29 H 1.09008 * 109.46942 * 189.36847 * 1 2 3 30 30 H 1.09000 * 109.47465 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47091 * 299.99722 * 3 2 1 32 32 H 1.08998 * 109.47226 * 59.99669 * 3 2 1 33 33 H 0.96995 * 120.00323 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47498 * 60.00047 * 12 2 1 35 35 H 1.08994 * 109.47344 * 180.02562 * 12 2 1 36 36 H 0.97000 * 119.99657 * 359.97438 * 13 12 2 37 37 H 0.97002 * 119.99833 * 0.02562 * 16 14 13 38 38 H 1.08993 * 109.47488 * 300.00670 * 17 16 14 39 39 H 1.09001 * 109.46526 * 60.01120 * 17 16 14 40 40 H 1.09000 * 110.91828 * 338.63408 * 20 18 17 41 41 H 1.08998 * 110.92020 * 102.26276 * 20 18 17 42 42 H 1.09005 * 113.69211 * 208.88485 * 22 21 20 43 43 H 1.09001 * 113.69388 * 340.04405 * 22 21 20 44 44 H 1.08997 * 113.56378 * 269.62404 * 23 22 21 45 45 H 1.08999 * 113.63232 * 138.89834 * 23 22 21 46 46 H 1.08998 * 113.69841 * 19.95634 * 24 21 20 47 47 H 1.09008 * 113.69636 * 151.11736 * 24 21 20 48 48 H 1.08995 * 110.34395 * 206.61121 * 25 21 20 49 49 H 1.09005 * 110.33827 * 84.36388 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4826 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1416 1.8042 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4914 3.6695 15 8 2.5759 -1.4800 3.7810 16 7 1.4280 0.1442 4.7700 17 6 1.7810 -0.3570 6.1006 18 6 1.1479 0.5387 7.1673 19 1 1.4363 1.5760 6.9974 20 6 1.6106 0.0877 8.5725 21 6 0.3170 0.2205 9.3938 22 6 0.2685 -0.5464 10.7079 23 6 0.7489 0.7549 11.3785 24 6 0.1450 1.5123 10.1804 25 6 -0.7734 -0.1082 8.3654 26 8 -0.2796 0.4170 7.1194 27 1 -0.3634 0.6518 0.7944 28 1 -0.3634 0.3621 -0.9617 29 1 -0.3633 -1.0140 0.1673 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6973 -0.6301 -4.4268 34 1 1.6767 -1.7489 1.2492 35 1 3.1299 -0.7208 1.2494 36 1 0.9942 0.7582 2.3564 37 1 0.8706 0.9331 4.6809 38 1 1.4105 -1.3756 6.2153 39 1 2.8649 -0.3493 6.2158 40 1 1.9564 -0.9458 8.5553 41 1 2.3861 0.7497 8.9580 42 1 -0.7370 -0.8461 11.0033 43 1 0.9899 -1.3614 10.7662 44 1 1.8338 0.8366 11.4437 45 1 0.2515 0.9682 12.3246 46 1 0.7684 2.3308 9.8203 47 1 -0.8959 1.8020 10.3249 48 1 -1.7099 0.3786 8.6373 49 1 -0.9133 -1.1868 8.2932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:39 Heat of formation + Delta-G solvation = -46.976536 kcal Electronic energy + Delta-G solvation = -26125.211187 eV Core-core repulsion = 22474.431684 eV Total energy + Delta-G solvation = -3650.779503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09638 -39.57255 -37.58734 -36.74479 -34.44213 -33.21734 -31.61781 -31.08533 -29.22969 -26.56340 -26.33190 -26.23785 -25.26370 -24.45621 -22.93918 -21.53154 -20.57289 -19.16077 -19.03478 -18.03770 -17.05166 -16.14287 -16.07820 -15.94362 -15.74727 -15.26160 -15.17448 -14.96511 -14.06350 -14.00475 -13.77733 -13.47755 -13.29985 -12.93698 -12.86978 -12.72327 -12.55934 -12.45613 -12.23843 -12.16041 -11.99829 -11.76356 -11.55001 -11.22016 -10.92137 -10.76355 -10.67225 -10.38176 -10.26412 -10.12823 -10.01616 -9.78844 -9.76729 -9.08880 -8.97395 -8.64542 -8.44672 -8.25922 -6.11165 -4.07989 3.00470 3.27027 3.34093 3.41220 3.45470 3.64220 3.84384 3.99441 4.14874 4.31448 4.38846 4.48519 4.63196 4.68135 4.80363 4.81329 5.07596 5.18981 5.19692 5.21596 5.26862 5.34022 5.38386 5.39978 5.45084 5.51689 5.63878 5.78132 5.81497 5.86664 5.89778 6.10218 6.13505 6.40676 6.50619 6.57381 6.60190 6.67751 6.73934 6.75964 6.89151 7.06151 7.26522 7.33660 7.48711 7.77290 8.40111 8.52274 8.94341 9.02574 9.52869 11.01916 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.037031 B = 0.002304 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.949308 B =12152.000867 C =12436.331341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.146 4.146 4 C -0.511 4.511 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.892 5.892 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.161 3.839 13 N -0.738 5.738 14 C 0.699 3.301 15 O -0.599 6.599 16 N -0.748 5.748 17 C 0.133 3.867 18 C 0.072 3.928 19 H 0.086 0.914 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.124 4.124 25 C 0.065 3.935 26 O -0.372 6.372 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.392 0.608 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.085 0.915 48 H 0.084 0.916 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.800 6.687 29.733 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.175 1.175 12 C 0.038 3.962 13 N -0.393 5.393 14 C 0.399 3.601 15 O -0.478 6.478 16 N -0.405 5.405 17 C 0.008 3.992 18 C 0.014 3.986 19 H 0.104 0.896 20 C -0.161 4.161 21 C -0.119 4.119 22 C -0.162 4.162 23 C -0.178 4.178 24 C -0.161 4.161 25 C -0.012 4.012 26 O -0.292 6.292 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.264 5.764 29.419 30.280 hybrid contribution -0.715 1.618 -0.238 1.784 sum -4.978 7.381 29.181 30.509 Atomic orbital electron populations 1.22281 0.97850 0.99859 0.99837 1.18733 0.92526 0.92271 0.93810 1.22343 1.01161 0.98340 0.98462 1.20721 1.33926 1.12272 0.87957 0.90517 1.24980 0.94731 0.97319 0.95806 1.69951 1.48300 1.35897 0.98691 0.87284 0.79307 0.85585 0.75928 1.21420 1.23477 1.17519 1.21360 0.98283 0.95440 0.81138 1.45481 1.55931 1.33104 1.04765 1.16027 0.80517 0.82954 0.80632 1.90891 1.43157 1.27645 1.86104 1.44981 1.57417 1.33439 1.04636 1.21513 0.99371 0.97751 0.80594 1.23048 0.81665 0.99561 0.94339 0.89571 1.22719 0.96922 1.03384 0.93099 1.22461 0.95847 0.98608 0.94957 1.22643 1.02162 0.97096 0.94296 1.22926 1.00983 0.96206 0.97710 1.22720 1.01727 0.95823 0.95875 1.23171 0.96635 0.98824 0.82535 1.88528 1.19650 1.85379 1.35607 0.95960 0.92620 0.93407 0.92818 0.94144 0.95200 0.92607 0.92155 0.92259 0.77405 0.77048 0.91452 0.90879 0.89491 0.89485 0.89628 0.90839 0.90079 0.91297 0.91027 0.89667 0.89776 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.53 37.16 0.28 -2.67 16 2 C 0.03 0.62 0.50 -155.67 -0.08 0.55 16 3 C -0.15 -3.02 7.52 37.16 0.28 -2.74 16 4 C -0.51 -13.95 8.62 -34.44 -0.30 -14.25 16 5 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 6 C 0.07 2.09 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 8 Si 0.89 21.39 22.79 -169.99 -3.87 17.52 16 9 H -0.29 -6.89 7.10 56.52 0.40 -6.48 16 10 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 11 H -0.25 -5.48 4.65 56.52 0.26 -5.22 16 12 C 0.16 3.37 4.49 -4.04 -0.02 3.35 16 13 N -0.74 -12.88 5.01 -65.22 -0.33 -13.21 16 14 C 0.70 12.42 8.57 -86.92 -0.74 11.67 16 15 O -0.60 -13.07 16.34 5.29 0.09 -12.98 16 16 N -0.75 -9.97 5.53 -65.23 -0.36 -10.34 16 17 C 0.13 1.52 5.21 -4.04 -0.02 1.49 16 18 C 0.07 0.62 3.58 -25.85 -0.09 0.53 16 19 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 20 C -0.12 -0.80 5.82 -25.43 -0.15 -0.95 16 21 C -0.12 -0.72 0.94 -154.70 -0.15 -0.87 16 22 C -0.12 -0.63 7.47 -26.57 -0.20 -0.82 16 23 C -0.14 -0.65 7.99 -25.67 -0.21 -0.86 16 24 C -0.12 -0.67 7.39 -26.57 -0.20 -0.86 16 25 C 0.06 0.50 7.20 37.39 0.27 0.77 16 26 O -0.37 -3.82 11.00 -35.23 -0.39 -4.20 16 27 H 0.02 0.39 7.13 -51.93 -0.37 0.02 16 28 H 0.06 1.23 4.30 -51.93 -0.22 1.01 16 29 H 0.05 1.00 8.12 -51.92 -0.42 0.58 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.88 2.25 -51.93 -0.12 0.76 16 32 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.39 5.95 6.27 -40.82 -0.26 5.69 16 37 H 0.40 4.44 8.49 -40.82 -0.35 4.09 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 0.56 7.84 -51.93 -0.41 0.16 16 41 H 0.09 0.47 8.06 -51.93 -0.42 0.05 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 47 H 0.08 0.43 8.07 -51.92 -0.42 0.01 16 48 H 0.08 0.57 8.01 -51.93 -0.42 0.15 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -32.80 371.00 -8.42 -41.23 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.52 Total: 6.23 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.41 Total: -3.67 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.09 Total: -49.71 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.30 Total: -17.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -3.87 Total: 17.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.80 -8.42 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.748 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds