Wall clock time and date at job start Fri Apr 10 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47087 * 2 1 4 4 C 1.50701 * 109.47068 * 240.00058 * 2 1 3 5 5 H 1.08006 * 119.99771 * 241.34446 * 4 2 1 6 6 C 1.37878 * 120.00306 * 61.34595 * 4 2 1 7 7 N 1.31513 * 120.00315 * 193.97653 * 6 4 2 8 8 Si 1.86803 * 119.99631 * 13.97525 * 6 4 2 9 9 H 1.48500 * 109.47228 * 84.55212 * 8 6 4 10 10 H 1.48496 * 109.46938 * 204.54874 * 8 6 4 11 11 H 1.48504 * 109.47264 * 324.54859 * 8 6 4 12 12 C 1.52995 * 109.47258 * 120.00081 * 2 1 3 13 13 N 1.46510 * 109.47140 * 300.00146 * 12 2 1 14 14 C 1.34773 * 119.99943 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00143 * 0.02562 * 14 13 12 16 16 N 1.34776 * 119.99905 * 179.97438 * 14 13 12 17 17 C 1.46501 * 120.00133 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46728 * 180.02562 * 17 16 14 19 19 H 1.09000 * 109.81195 * 305.59806 * 18 17 16 20 20 C 1.54665 * 109.81325 * 184.67580 * 18 17 16 21 21 C 1.53809 * 102.02613 * 220.44836 * 20 18 17 22 22 C 1.52225 * 116.37495 * 161.12203 * 21 20 18 23 23 C 1.54067 * 86.57809 * 94.46428 * 22 21 20 24 24 C 1.52216 * 116.37181 * 263.72988 * 21 20 18 25 25 C 1.53450 * 102.78342 * 32.42012 * 21 20 18 26 26 O 1.43349 * 109.81930 * 66.46071 * 18 17 16 27 27 H 1.08994 * 109.47469 * 309.36784 * 1 2 3 28 28 H 1.09000 * 109.47489 * 69.36899 * 1 2 3 29 29 H 1.09008 * 109.46942 * 189.36847 * 1 2 3 30 30 H 1.09000 * 109.47465 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47091 * 299.99722 * 3 2 1 32 32 H 1.08998 * 109.47226 * 59.99669 * 3 2 1 33 33 H 0.96995 * 120.00323 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47498 * 60.00047 * 12 2 1 35 35 H 1.08994 * 109.47344 * 180.02562 * 12 2 1 36 36 H 0.97000 * 119.99657 * 359.97438 * 13 12 2 37 37 H 0.97002 * 119.99833 * 0.02562 * 16 14 13 38 38 H 1.08993 * 109.47488 * 300.00670 * 17 16 14 39 39 H 1.09001 * 109.46526 * 60.01120 * 17 16 14 40 40 H 1.09000 * 110.91828 * 338.63408 * 20 18 17 41 41 H 1.08998 * 110.92020 * 102.26276 * 20 18 17 42 42 H 1.09005 * 113.69211 * 208.88485 * 22 21 20 43 43 H 1.09001 * 113.69388 * 340.04405 * 22 21 20 44 44 H 1.08997 * 113.56378 * 269.62404 * 23 22 21 45 45 H 1.08999 * 113.63232 * 138.89834 * 23 22 21 46 46 H 1.08998 * 113.69841 * 19.95634 * 24 21 20 47 47 H 1.09008 * 113.69636 * 151.11736 * 24 21 20 48 48 H 1.08995 * 110.34395 * 206.61121 * 25 21 20 49 49 H 1.09005 * 110.33827 * 84.36388 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2234 -2.4826 7 7 1.9157 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4817 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1416 1.8042 -1.5158 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4914 3.6695 15 8 2.5759 -1.4800 3.7810 16 7 1.4280 0.1442 4.7700 17 6 1.7810 -0.3570 6.1006 18 6 1.1479 0.5387 7.1673 19 1 1.4363 1.5760 6.9974 20 6 1.6106 0.0877 8.5725 21 6 0.3170 0.2205 9.3938 22 6 0.2685 -0.5464 10.7079 23 6 0.7489 0.7549 11.3785 24 6 0.1450 1.5123 10.1804 25 6 -0.7734 -0.1082 8.3654 26 8 -0.2796 0.4170 7.1194 27 1 -0.3634 0.6518 0.7944 28 1 -0.3634 0.3621 -0.9617 29 1 -0.3633 -1.0140 0.1673 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6973 -0.6301 -4.4268 34 1 1.6767 -1.7489 1.2492 35 1 3.1299 -0.7208 1.2494 36 1 0.9942 0.7582 2.3564 37 1 0.8706 0.9331 4.6809 38 1 1.4105 -1.3756 6.2153 39 1 2.8649 -0.3493 6.2158 40 1 1.9564 -0.9458 8.5553 41 1 2.3861 0.7497 8.9580 42 1 -0.7370 -0.8461 11.0033 43 1 0.9899 -1.3614 10.7662 44 1 1.8338 0.8366 11.4437 45 1 0.2515 0.9682 12.3246 46 1 0.7684 2.3308 9.8203 47 1 -0.8959 1.8020 10.3249 48 1 -1.7099 0.3786 8.6373 49 1 -0.9133 -1.1868 8.2932 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408485.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:38 Heat of formation + Delta-G solvation = -70.991666 kcal Electronic energy + Delta-G solvation = -26126.252561 eV Core-core repulsion = 22474.431684 eV Total energy + Delta-G solvation = -3651.820877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67760 -40.95532 -38.63296 -38.02619 -35.61502 -34.96644 -33.43582 -31.98006 -29.88558 -28.02917 -27.75429 -27.05370 -26.66805 -25.92805 -23.39253 -22.27368 -21.98530 -20.91824 -19.57601 -19.42221 -18.03658 -17.77147 -17.17356 -17.11553 -16.64827 -16.51672 -16.18176 -15.89587 -15.40439 -15.18542 -15.06863 -14.80899 -14.47252 -14.34717 -14.03676 -13.96037 -13.74369 -13.67912 -13.35250 -13.14471 -12.88906 -12.71832 -12.41292 -12.37471 -12.13223 -12.01015 -11.94460 -11.75501 -11.42492 -11.27459 -11.17733 -11.13156 -11.03315 -10.60675 -10.45388 -10.39024 -10.33136 -9.68338 -8.28891 -6.30490 1.37980 1.38685 1.52010 1.77259 2.20448 2.35925 2.78411 3.06740 3.35042 3.41129 3.52227 3.67105 3.92813 4.00482 4.01829 4.08886 4.16714 4.27243 4.35090 4.42708 4.51116 4.60908 4.67002 4.74603 4.76477 4.82906 4.85600 4.87177 4.87955 4.90382 4.95000 4.96029 5.07425 5.08309 5.12714 5.19434 5.19996 5.38658 5.44241 5.48910 5.54845 5.57461 5.74051 5.80698 6.04193 6.06463 6.32544 6.73440 7.16783 7.33931 7.63810 8.88230 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.037031 B = 0.002304 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.949308 B =12152.000867 C =12436.331341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.028 3.972 3 C -0.145 4.145 4 C -0.517 4.517 5 H 0.027 0.973 6 C 0.014 3.986 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.281 1.281 10 H -0.315 1.315 11 H -0.204 1.204 12 C 0.177 3.823 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.644 6.644 16 N -0.728 5.728 17 C 0.131 3.869 18 C 0.079 3.921 19 H 0.101 0.899 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.137 4.137 24 C -0.124 4.124 25 C 0.058 3.942 26 O -0.394 6.394 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.264 0.736 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.408 0.592 37 H 0.411 0.589 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.222 9.799 32.554 34.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 C -0.202 4.202 4 C -0.555 4.555 5 H 0.045 0.955 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.776 3.224 9 H -0.208 1.208 10 H -0.245 1.245 11 H -0.128 1.128 12 C 0.052 3.948 13 N -0.382 5.382 14 C 0.396 3.604 15 O -0.526 6.526 16 N -0.385 5.385 17 C 0.006 3.994 18 C 0.021 3.979 19 H 0.118 0.882 20 C -0.158 4.158 21 C -0.117 4.117 22 C -0.162 4.162 23 C -0.174 4.174 24 C -0.161 4.161 25 C -0.018 4.018 26 O -0.314 6.314 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.245 0.755 37 H 0.247 0.753 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.722 8.923 32.312 34.006 hybrid contribution -0.230 0.502 -1.054 1.190 sum -5.952 9.425 31.258 33.187 Atomic orbital electron populations 1.22207 0.96101 1.00533 1.00847 1.18660 0.93766 0.93227 0.91701 1.22273 1.00997 0.96676 1.00244 1.21013 1.32880 1.11059 0.90531 0.95459 1.25890 0.95451 1.01758 0.95203 1.70114 1.50723 1.38300 0.99386 0.86296 0.79396 0.79787 0.76904 1.20827 1.24509 1.12807 1.20877 0.97046 0.94504 0.82333 1.45100 1.56077 1.33317 1.03700 1.16184 0.80213 0.82610 0.81380 1.90869 1.45198 1.29779 1.86757 1.44855 1.56402 1.33146 1.04089 1.21676 0.99767 0.97653 0.80311 1.23037 0.81080 0.99484 0.94285 0.88165 1.22731 0.97581 1.03643 0.91883 1.22466 0.94800 0.99578 0.94875 1.22673 1.02573 0.97315 0.93605 1.22918 1.01236 0.95523 0.97741 1.22743 1.02068 0.95408 0.95870 1.23313 0.97594 0.98570 0.82310 1.88494 1.20346 1.85468 1.37046 0.91654 0.93537 0.94259 0.93448 0.94657 0.90793 0.92686 0.94634 0.94154 0.75519 0.75329 0.93211 0.90746 0.89718 0.87862 0.89113 0.90842 0.89730 0.90665 0.90953 0.89337 0.88900 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 7.53 71.98 0.54 -4.90 16 2 C 0.03 1.20 0.50 -52.93 -0.03 1.18 16 3 C -0.15 -5.51 7.52 71.98 0.54 -4.96 16 4 C -0.52 -29.04 8.62 25.60 0.22 -28.82 16 5 H 0.03 1.74 7.99 -2.91 -0.02 1.72 16 6 C 0.01 0.82 5.32 84.66 0.45 1.27 16 7 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 8 Si 0.95 43.21 22.79 68.60 1.56 44.78 16 9 H -0.28 -12.53 7.10 99.48 0.71 -11.82 16 10 H -0.32 -14.84 7.11 99.48 0.71 -14.13 16 11 H -0.20 -7.87 4.65 99.48 0.46 -7.41 16 12 C 0.18 7.42 4.49 86.38 0.39 7.81 16 13 N -0.73 -23.80 5.01 -478.53 -2.40 -26.20 16 14 C 0.70 23.85 8.57 179.06 1.53 25.39 16 15 O -0.64 -28.23 16.34 -3.99 -0.07 -28.30 16 16 N -0.73 -17.87 5.53 -478.54 -2.65 -20.52 16 17 C 0.13 2.80 5.21 86.38 0.45 3.25 16 18 C 0.08 1.18 3.58 31.16 0.11 1.30 16 19 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 20 C -0.12 -1.31 5.82 31.43 0.18 -1.13 16 21 C -0.12 -1.18 0.94 -52.31 -0.05 -1.23 16 22 C -0.12 -0.99 7.47 30.70 0.23 -0.76 16 23 C -0.14 -0.93 7.99 31.28 0.25 -0.68 16 24 C -0.12 -1.01 7.39 30.70 0.23 -0.78 16 25 C 0.06 0.80 7.20 72.13 0.52 1.32 16 26 O -0.39 -7.27 11.00 -148.98 -1.64 -8.91 16 27 H 0.06 1.98 7.13 -2.39 -0.02 1.97 16 28 H 0.05 1.90 4.30 -2.39 -0.01 1.89 16 29 H 0.04 1.57 8.12 -2.38 -0.02 1.56 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.39 2.25 -2.39 -0.01 1.38 16 32 H 0.07 2.15 6.86 -2.39 -0.02 2.13 16 33 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.41 10.65 6.27 -92.71 -0.58 10.07 16 37 H 0.41 7.83 8.49 -92.71 -0.79 7.04 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 0.97 7.84 -2.39 -0.02 0.95 16 41 H 0.10 0.81 8.06 -2.39 -0.02 0.79 16 42 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.07 0.59 8.12 -2.39 -0.02 0.57 16 47 H 0.09 0.67 8.07 -2.38 -0.02 0.65 16 48 H 0.09 1.09 8.01 -2.39 -0.02 1.07 16 49 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -74.50 371.00 0.02 -74.48 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.66 Total: 25.50 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.57 Total: -1.76 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -4.74 Total: -105.79 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -1.70 Total: -37.21 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.56 Total: 44.78 kcal Total: -74.50 0.02 -74.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408485.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.488 kcal (2) G-P(sol) polarization free energy of solvation -74.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds