Wall clock time and date at job start Fri Apr 10 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50692 * 120.00510 * 2 1 4 4 C 1.52998 * 109.47374 * 124.99851 * 3 2 1 5 5 O 1.42905 * 109.45719 * 65.02740 * 4 3 2 6 6 C 1.53038 * 109.46160 * 305.07219 * 4 3 2 7 7 C 1.53192 * 109.31617 * 178.60951 * 6 4 3 8 8 N 1.46931 * 108.77361 * 54.63462 * 7 6 4 9 9 C 1.34772 * 120.62931 * 126.41101 * 8 7 6 10 10 O 1.21590 * 119.99868 * 174.94176 * 9 8 7 11 11 N 1.34777 * 120.00206 * 354.94774 * 9 8 7 12 12 C 1.46502 * 120.00108 * 185.07610 * 11 9 8 13 13 C 1.53000 * 109.47092 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46948 * 299.98956 * 13 12 11 15 15 C 1.52993 * 109.47662 * 59.99323 * 13 12 11 16 16 C 1.50698 * 109.46796 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00731 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99642 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00189 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99730 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46944 * 60.00095 * 20 18 16 22 22 H 1.48507 * 109.47047 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47439 * 299.99901 * 20 18 16 24 24 C 1.46923 * 118.73554 * 306.39241 * 8 7 6 25 25 C 1.53039 * 109.46617 * 185.00283 * 4 3 2 26 26 H 1.08007 * 119.99609 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00735 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99309 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47004 * 5.00112 * 3 2 1 30 30 H 1.08996 * 109.47708 * 244.99975 * 3 2 1 31 31 H 0.96700 * 114.00438 * 300.00232 * 5 4 3 32 32 H 1.08998 * 109.49573 * 298.56281 * 6 4 3 33 33 H 1.09001 * 109.49771 * 58.65502 * 6 4 3 34 34 H 1.09000 * 109.58764 * 294.84971 * 7 6 4 35 35 H 1.09004 * 109.58816 * 174.41717 * 7 6 4 36 36 H 0.97002 * 120.00131 * 5.06211 * 11 9 8 37 37 H 1.09009 * 109.46438 * 299.99107 * 12 11 9 38 38 H 1.09000 * 109.47595 * 59.99267 * 12 11 9 39 39 H 1.09007 * 109.47022 * 60.00146 * 14 13 12 40 40 H 1.08999 * 109.47336 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.47598 * 300.00707 * 14 13 12 42 42 H 1.08996 * 109.47188 * 60.00206 * 15 13 12 43 43 H 1.08999 * 109.47185 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47070 * 300.00347 * 15 13 12 45 45 H 0.96997 * 120.00016 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.58662 * 293.81817 * 24 8 7 47 47 H 1.09004 * 109.69856 * 173.46081 * 24 8 7 48 48 H 1.09004 * 109.49241 * 301.33581 * 25 4 3 49 49 H 1.08996 * 109.49634 * 61.42789 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 8 4.0298 0.3224 1.0040 6 6 2.2675 1.0698 2.4792 7 6 3.2483 1.0641 3.6559 8 7 4.0048 2.3237 3.6471 9 6 4.0542 3.1026 4.7458 10 8 4.7571 4.0947 4.7565 11 7 3.3247 2.7818 5.8327 12 6 3.2912 3.6856 6.9853 13 6 2.3975 3.0897 8.0748 14 6 0.9800 2.9073 7.5285 15 6 2.9560 1.7325 8.5070 16 6 2.3635 4.0191 9.2606 17 1 2.9236 4.9422 9.2395 18 6 1.6172 3.6908 10.3725 19 7 0.9347 2.5670 10.3982 20 14 1.5757 4.8425 11.8427 21 1 1.0347 6.1606 11.4238 22 1 0.7072 4.2648 12.8997 23 1 2.9516 5.0181 12.3731 24 6 4.7065 2.7176 2.4179 25 6 3.7093 2.7048 1.2551 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1315 0.0896 30 1 2.6214 1.4025 -0.9313 31 1 3.6736 -0.5748 0.9486 32 1 1.5252 1.8540 2.6281 33 1 1.7683 0.1028 2.4169 34 1 3.9358 0.2243 3.5545 35 1 2.6961 0.9761 4.5915 36 1 2.8217 1.9526 5.8518 37 1 4.3010 3.8151 7.3748 38 1 2.8937 4.6527 6.6773 39 1 1.0048 2.2349 6.6709 40 1 0.3431 2.4832 8.3048 41 1 0.5820 3.8743 7.2205 42 1 3.9658 1.8624 8.8962 43 1 2.3190 1.3078 9.2828 44 1 2.9809 1.0601 7.6494 45 1 0.4095 2.3363 11.1803 46 1 5.5129 2.0127 2.2156 47 1 5.1183 3.7201 2.5350 48 1 4.2366 2.9015 0.3215 49 1 2.9535 3.4735 1.4155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:41 Heat of formation + Delta-G solvation = -64.330391 kcal Electronic energy + Delta-G solvation = -27163.729539 eV Core-core repulsion = 23512.197516 eV Total energy + Delta-G solvation = -3651.532023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47013 -38.92839 -36.51204 -35.45691 -34.52776 -33.38144 -31.85165 -31.06719 -30.52958 -27.82858 -25.70708 -25.57852 -24.88846 -23.60705 -23.23817 -20.86534 -20.00483 -19.37552 -18.84405 -17.97056 -16.79819 -15.98546 -15.74557 -15.65070 -15.31306 -15.01013 -14.69818 -14.27866 -14.03422 -13.95283 -13.61325 -13.27035 -13.21980 -12.83763 -12.76153 -12.46272 -12.14194 -12.05579 -11.94208 -11.56935 -11.41508 -11.36837 -11.26760 -11.16695 -10.82558 -10.70964 -10.49478 -10.35978 -10.34135 -10.17400 -9.65477 -9.60562 -9.55094 -9.26715 -8.77704 -8.60259 -8.37450 -8.05623 -6.00158 -4.09941 1.90359 3.02532 3.31734 3.35658 3.39927 3.64878 3.94797 4.29909 4.32218 4.43090 4.53049 4.58145 4.77226 4.85465 4.98868 5.17666 5.26536 5.26782 5.37224 5.45194 5.48468 5.54347 5.60265 5.70052 5.77710 5.88588 5.89805 6.16799 6.24046 6.25407 6.37945 6.40293 6.52984 6.69364 6.83539 6.84346 6.95697 7.05671 7.14687 7.32805 7.39736 7.43392 7.57873 7.71621 8.03076 8.14489 8.40431 8.48442 8.89757 9.09290 9.55607 11.01272 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003082 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.745990 B = 9083.873454 C = 9810.450143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.159 4.159 3 C -0.120 4.120 4 C 0.142 3.858 5 O -0.553 6.553 6 C -0.159 4.159 7 C 0.118 3.882 8 N -0.633 5.633 9 C 0.701 3.299 10 O -0.599 6.599 11 N -0.734 5.734 12 C 0.149 3.851 13 C 0.056 3.944 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.137 3.863 25 C -0.120 4.120 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.372 0.628 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.392 0.608 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.004 0.996 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.085 0.915 44 H 0.004 0.996 45 H 0.260 0.740 46 H 0.068 0.932 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.101 -7.894 -20.458 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.177 4.177 3 C -0.158 4.158 4 C 0.101 3.899 5 O -0.359 6.359 6 C -0.197 4.197 7 C -0.006 4.006 8 N -0.372 5.372 9 C 0.402 3.598 10 O -0.478 6.478 11 N -0.391 5.391 12 C 0.026 3.974 13 C 0.056 3.944 14 C -0.186 4.186 15 C -0.187 4.187 16 C -0.544 4.544 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.013 3.987 25 C -0.159 4.159 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.219 0.781 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.230 0.770 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.023 0.977 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.103 0.897 44 H 0.023 0.977 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.109 0.891 48 H 0.098 0.902 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.669 -6.710 -20.252 21.345 hybrid contribution -0.874 -0.415 0.750 1.224 sum -0.205 -7.125 -19.502 20.764 Atomic orbital electron populations 1.23893 0.95921 1.02045 1.00571 1.22830 0.96125 0.98226 1.00485 1.21478 0.98722 0.96164 0.99419 1.21090 0.87354 0.89092 0.92355 1.86566 1.35469 1.18084 1.95785 1.22613 0.98602 1.03258 0.95262 1.21475 0.93963 0.86870 0.98273 1.47228 1.55032 1.22865 1.12076 1.15992 0.80785 0.82686 0.80291 1.90862 1.44963 1.29064 1.82930 1.45679 1.51118 1.25948 1.16323 1.21579 1.00297 0.91500 0.83994 1.18350 0.90888 0.93759 0.91432 1.21812 1.00313 0.98146 0.98343 1.21811 1.00019 0.97301 0.99537 1.20960 1.28971 1.05342 0.99140 0.92450 1.24875 0.95121 0.95216 0.98271 1.69793 1.30615 1.22627 1.29498 0.86632 0.77998 0.81062 0.82150 1.20290 1.21360 1.20273 1.21248 0.93668 1.02045 0.81704 1.21953 0.99836 0.94460 0.99625 0.88502 0.88419 0.87404 0.90514 0.90099 0.78057 0.90451 0.90324 0.91138 0.90368 0.77027 0.92932 0.93111 0.97743 0.89646 0.95484 0.95409 0.89651 0.97727 0.92994 0.91356 0.89082 0.90198 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.22 14.32 29.02 0.42 -0.80 16 2 C -0.16 -1.01 7.57 -36.03 -0.27 -1.28 16 3 C -0.12 -0.85 4.96 -27.89 -0.14 -0.99 16 4 C 0.14 1.21 0.73 -90.58 -0.07 1.14 16 5 O -0.55 -4.74 11.69 -35.23 -0.41 -5.15 16 6 C -0.16 -1.46 4.79 -26.61 -0.13 -1.59 16 7 C 0.12 1.36 6.19 -3.71 -0.02 1.34 16 8 N -0.63 -9.25 2.97 -178.50 -0.53 -9.78 16 9 C 0.70 13.30 8.30 -86.92 -0.72 12.58 16 10 O -0.60 -13.56 15.79 5.29 0.08 -13.47 16 11 N -0.73 -13.89 4.87 -65.22 -0.32 -14.20 16 12 C 0.15 3.30 4.51 -4.04 -0.02 3.28 16 13 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.95 8.08 37.15 0.30 -2.65 16 16 C -0.51 -13.39 8.01 -34.44 -0.28 -13.66 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 20 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.14 1.76 6.17 -3.71 -0.02 1.74 16 25 C -0.12 -1.20 5.11 -26.61 -0.14 -1.33 16 26 H 0.10 0.63 7.84 -52.48 -0.41 0.22 16 27 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 28 H 0.11 0.54 7.22 -52.48 -0.38 0.17 16 29 H 0.08 0.56 7.79 -51.93 -0.40 0.15 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.37 2.03 7.75 45.56 0.35 2.38 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.60 7.02 -51.93 -0.36 0.24 16 34 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 35 H 0.08 0.93 5.57 -51.93 -0.29 0.65 16 36 H 0.39 6.73 3.62 -40.82 -0.15 6.59 16 37 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 40 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 44 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 45 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 46 H 0.07 0.86 7.81 -51.93 -0.41 0.46 16 47 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 372.60 15.07 5.61 5.61 Total: -1.00 -30.13 372.60 -8.53 -38.66 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -7.51 Total: 7.60 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.96 Total: -1.94 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.33 Total: -47.13 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.33 Total: -18.62 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.13 -8.53 -38.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.674 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds