Wall clock time and date at job start Fri Apr 10 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50692 * 120.00510 * 2 1 4 4 C 1.52998 * 109.47374 * 124.99851 * 3 2 1 5 5 O 1.42905 * 109.45719 * 65.02740 * 4 3 2 6 6 C 1.53038 * 109.46160 * 305.07219 * 4 3 2 7 7 C 1.53192 * 109.31617 * 178.60951 * 6 4 3 8 8 N 1.46931 * 108.77361 * 54.63462 * 7 6 4 9 9 C 1.34772 * 120.62931 * 126.41101 * 8 7 6 10 10 O 1.21590 * 119.99868 * 174.94176 * 9 8 7 11 11 N 1.34777 * 120.00206 * 354.94774 * 9 8 7 12 12 C 1.46502 * 120.00108 * 185.07610 * 11 9 8 13 13 C 1.53000 * 109.47092 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46948 * 299.98956 * 13 12 11 15 15 C 1.52993 * 109.47662 * 59.99323 * 13 12 11 16 16 C 1.50698 * 109.46796 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00731 * 359.97438 * 16 13 12 18 18 C 1.37883 * 119.99642 * 179.97438 * 16 13 12 19 19 N 1.31511 * 120.00189 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99730 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46944 * 60.00095 * 20 18 16 22 22 H 1.48507 * 109.47047 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47439 * 299.99901 * 20 18 16 24 24 C 1.46923 * 118.73554 * 306.39241 * 8 7 6 25 25 C 1.53039 * 109.46617 * 185.00283 * 4 3 2 26 26 H 1.08007 * 119.99609 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00735 * 179.97438 * 1 2 3 28 28 H 1.08004 * 119.99309 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47004 * 5.00112 * 3 2 1 30 30 H 1.08996 * 109.47708 * 244.99975 * 3 2 1 31 31 H 0.96700 * 114.00438 * 300.00232 * 5 4 3 32 32 H 1.08998 * 109.49573 * 298.56281 * 6 4 3 33 33 H 1.09001 * 109.49771 * 58.65502 * 6 4 3 34 34 H 1.09000 * 109.58764 * 294.84971 * 7 6 4 35 35 H 1.09004 * 109.58816 * 174.41717 * 7 6 4 36 36 H 0.97002 * 120.00131 * 5.06211 * 11 9 8 37 37 H 1.09009 * 109.46438 * 299.99107 * 12 11 9 38 38 H 1.09000 * 109.47595 * 59.99267 * 12 11 9 39 39 H 1.09007 * 109.47022 * 60.00146 * 14 13 12 40 40 H 1.08999 * 109.47336 * 180.02562 * 14 13 12 41 41 H 1.09004 * 109.47598 * 300.00707 * 14 13 12 42 42 H 1.08996 * 109.47188 * 60.00206 * 15 13 12 43 43 H 1.08999 * 109.47185 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47070 * 300.00347 * 15 13 12 45 45 H 0.96997 * 120.00016 * 180.02562 * 19 18 16 46 46 H 1.08993 * 109.58662 * 293.81817 * 24 8 7 47 47 H 1.09004 * 109.69856 * 173.46081 * 24 8 7 48 48 H 1.09004 * 109.49241 * 301.33581 * 25 4 3 49 49 H 1.08996 * 109.49634 * 61.42789 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 8 4.0298 0.3224 1.0040 6 6 2.2675 1.0698 2.4792 7 6 3.2483 1.0641 3.6559 8 7 4.0048 2.3237 3.6471 9 6 4.0542 3.1026 4.7458 10 8 4.7571 4.0947 4.7565 11 7 3.3247 2.7818 5.8327 12 6 3.2912 3.6856 6.9853 13 6 2.3975 3.0897 8.0748 14 6 0.9800 2.9073 7.5285 15 6 2.9560 1.7325 8.5070 16 6 2.3635 4.0191 9.2606 17 1 2.9236 4.9422 9.2395 18 6 1.6172 3.6908 10.3725 19 7 0.9347 2.5670 10.3982 20 14 1.5757 4.8425 11.8427 21 1 1.0347 6.1606 11.4238 22 1 0.7072 4.2648 12.8997 23 1 2.9516 5.0181 12.3731 24 6 4.7065 2.7176 2.4179 25 6 3.7093 2.7048 1.2551 26 1 -0.5400 0.9354 -0.0004 27 1 -0.5401 -0.9352 -0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 1.3587 2.1315 0.0896 30 1 2.6214 1.4025 -0.9313 31 1 3.6736 -0.5748 0.9486 32 1 1.5252 1.8540 2.6281 33 1 1.7683 0.1028 2.4169 34 1 3.9358 0.2243 3.5545 35 1 2.6961 0.9761 4.5915 36 1 2.8217 1.9526 5.8518 37 1 4.3010 3.8151 7.3748 38 1 2.8937 4.6527 6.6773 39 1 1.0048 2.2349 6.6709 40 1 0.3431 2.4832 8.3048 41 1 0.5820 3.8743 7.2205 42 1 3.9658 1.8624 8.8962 43 1 2.3190 1.3078 9.2828 44 1 2.9809 1.0601 7.6494 45 1 0.4095 2.3363 11.1803 46 1 5.5129 2.0127 2.2156 47 1 5.1183 3.7201 2.5350 48 1 4.2366 2.9015 0.3215 49 1 2.9535 3.4735 1.4155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:40 Heat of formation + Delta-G solvation = -83.087762 kcal Electronic energy + Delta-G solvation = -27164.542919 eV Core-core repulsion = 23512.197516 eV Total energy + Delta-G solvation = -3652.345403 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62092 -40.02869 -38.22164 -36.60965 -35.11174 -35.03848 -33.14214 -32.13711 -31.87884 -28.66839 -27.57162 -27.43062 -26.59011 -24.52977 -24.27673 -21.88422 -20.64393 -20.60691 -20.48097 -19.30643 -17.81972 -17.48245 -17.15968 -16.70740 -16.60494 -16.28247 -15.78909 -15.40473 -15.24881 -15.10205 -14.89797 -14.67569 -14.34402 -14.12053 -13.96239 -13.77800 -13.33764 -13.20545 -13.08826 -12.87563 -12.74580 -12.66935 -12.61437 -12.26454 -12.22768 -12.17273 -12.12031 -12.04959 -11.48959 -11.34167 -11.19295 -11.14947 -10.92041 -10.71596 -10.39455 -10.14343 -10.03033 -9.40192 -8.01705 -6.17328 1.43509 1.45015 1.45808 1.52493 1.72524 2.16390 2.46520 3.02963 3.21800 3.32086 3.65216 3.75803 3.86472 4.07075 4.21685 4.29842 4.36770 4.41483 4.44950 4.52222 4.58477 4.66350 4.71843 4.76536 4.82507 4.87780 4.96019 5.01929 5.04284 5.06274 5.10421 5.10989 5.14573 5.19203 5.34775 5.38352 5.58524 5.64335 5.66760 5.67656 5.79066 5.91844 5.99402 6.14568 6.21411 6.44020 6.86153 6.92605 7.03203 7.50136 7.59984 8.97221 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003082 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.745990 B = 9083.873454 C = 9810.450143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C -0.114 4.114 4 C 0.149 3.851 5 O -0.563 6.563 6 C -0.152 4.152 7 C 0.112 3.888 8 N -0.625 5.625 9 C 0.696 3.304 10 O -0.642 6.642 11 N -0.727 5.727 12 C 0.167 3.833 13 C 0.053 3.947 14 C -0.117 4.117 15 C -0.118 4.118 16 C -0.531 4.531 17 H 0.044 0.956 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 0.945 3.055 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.278 1.278 24 C 0.134 3.866 25 C -0.117 4.117 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.387 0.613 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.403 0.597 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.016 0.984 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.261 0.739 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.095 0.905 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -9.564 -21.948 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.178 4.178 3 C -0.152 4.152 4 C 0.109 3.891 5 O -0.371 6.371 6 C -0.191 4.191 7 C -0.011 4.011 8 N -0.362 5.362 9 C 0.397 3.603 10 O -0.524 6.524 11 N -0.385 5.385 12 C 0.042 3.958 13 C 0.052 3.948 14 C -0.175 4.175 15 C -0.176 4.176 16 C -0.570 4.570 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.204 1.204 24 C 0.012 3.988 25 C -0.155 4.155 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.143 0.857 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.237 0.763 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.242 0.758 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.113 0.887 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.049 -8.441 -21.783 23.361 hybrid contribution -0.656 0.066 1.151 1.327 sum -0.607 -8.374 -20.632 22.275 Atomic orbital electron populations 1.24010 0.96197 1.02327 1.00594 1.22915 0.96072 0.98404 1.00374 1.21389 0.98333 0.96699 0.98751 1.20931 0.87307 0.88285 0.92608 1.86538 1.35735 1.19097 1.95753 1.22583 0.97810 1.04200 0.94465 1.21737 0.94487 0.85514 0.99337 1.47295 1.54647 1.23150 1.11110 1.16158 0.80354 0.82687 0.81065 1.90831 1.46676 1.31135 1.83798 1.45390 1.51531 1.25860 1.15672 1.21136 0.98635 0.91371 0.84623 1.18343 0.91734 0.93646 0.91038 1.21638 0.99015 0.98168 0.98646 1.21649 0.98708 0.97283 0.99964 1.21241 1.29317 1.05652 1.00779 0.93779 1.25436 0.94910 0.96459 1.00191 1.69889 1.30587 1.23275 1.29904 0.85819 0.77828 0.79491 0.79668 1.20253 1.20689 1.20355 1.21354 0.94651 1.00897 0.81937 1.21926 0.99162 0.95688 0.98760 0.88964 0.87589 0.85733 0.90833 0.89733 0.76268 0.91425 0.88042 0.89683 0.90668 0.75795 0.94900 0.94726 0.94768 0.91733 0.96343 0.96448 0.91678 0.94833 0.92964 0.90791 0.91329 0.88684 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 14.32 67.78 0.97 -1.06 16 2 C -0.16 -1.52 7.57 25.65 0.19 -1.32 16 3 C -0.11 -1.30 4.96 29.85 0.15 -1.16 16 4 C 0.15 2.14 0.73 -10.77 -0.01 2.13 16 5 O -0.56 -7.78 11.69 -148.98 -1.74 -9.53 16 6 C -0.15 -2.38 4.79 30.67 0.15 -2.23 16 7 C 0.11 2.31 6.19 86.36 0.53 2.84 16 8 N -0.62 -17.62 2.97 -836.91 -2.49 -20.10 16 9 C 0.70 26.37 8.30 179.06 1.49 27.86 16 10 O -0.64 -29.75 15.79 -4.00 -0.06 -29.81 16 11 N -0.73 -27.15 4.87 -478.52 -2.33 -29.49 16 12 C 0.17 7.48 4.51 86.38 0.39 7.87 16 13 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 14 C -0.12 -5.23 8.08 71.98 0.58 -4.65 16 15 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 16 C -0.53 -28.54 8.01 25.60 0.21 -28.34 16 17 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 18 C 0.03 1.59 5.15 84.66 0.44 2.02 16 19 N -0.90 -47.83 9.35 21.45 0.20 -47.63 16 20 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C 0.13 3.35 6.17 86.36 0.53 3.89 16 25 C -0.12 -2.14 5.11 30.67 0.16 -1.98 16 26 H 0.09 1.03 7.84 -2.91 -0.02 1.01 16 27 H 0.11 0.92 8.06 -2.91 -0.02 0.90 16 28 H 0.12 0.76 7.22 -2.91 -0.02 0.74 16 29 H 0.07 0.90 7.79 -2.39 -0.02 0.88 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.39 2.71 7.75 -74.06 -0.57 2.13 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.17 7.02 -2.39 -0.02 1.15 16 34 H 0.08 1.57 7.81 -2.39 -0.02 1.55 16 35 H 0.08 1.60 5.57 -2.38 -0.01 1.59 16 36 H 0.40 13.16 3.62 -92.71 -0.34 12.82 16 37 H 0.03 1.58 8.14 -2.38 -0.02 1.57 16 38 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.03 1.28 6.86 -2.38 -0.02 1.26 16 40 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 41 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 44 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 45 H 0.26 13.38 8.31 -92.71 -0.77 12.61 16 46 H 0.07 1.77 7.81 -2.39 -0.02 1.75 16 47 H 0.07 2.03 7.04 -2.39 -0.02 2.01 16 48 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 49 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -65.18 372.60 1.96 -63.22 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.03 Total: 24.88 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: 6.33 Total: 3.59 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -4.62 Total: -97.22 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.81 Total: -39.34 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -65.18 1.96 -63.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.868 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds