Wall clock time and date at job start Fri Apr 10 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 C 1.50705 * 109.46602 * 120.00298 * 2 1 3 5 5 H 1.07993 * 120.00405 * 124.70282 * 4 2 1 6 6 C 1.37879 * 119.99729 * 304.69310 * 4 2 1 7 7 N 1.31517 * 119.99485 * 159.96999 * 6 4 2 8 8 Si 1.86802 * 120.00273 * 339.97458 * 6 4 2 9 9 H 1.48500 * 109.47038 * 275.38043 * 8 6 4 10 10 H 1.48500 * 109.47040 * 35.37875 * 8 6 4 11 11 H 1.48501 * 109.46952 * 155.37883 * 8 6 4 12 12 C 1.52995 * 109.47048 * 239.99711 * 2 1 3 13 13 N 1.46498 * 109.47033 * 60.00332 * 12 2 1 14 14 C 1.34777 * 119.99798 * 179.97438 * 13 12 2 15 15 O 1.21592 * 120.00311 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00095 * 180.02562 * 14 13 12 17 17 C 1.47022 * 125.64592 * 359.69016 * 16 14 13 18 18 C 1.54319 * 107.27514 * 180.97119 * 17 16 14 19 19 C 1.55157 * 102.86264 * 22.52699 * 18 17 16 20 20 H 1.08995 * 111.00266 * 82.37698 * 19 18 17 21 21 C 1.53003 * 111.00256 * 206.23030 * 19 18 17 22 22 H 1.08999 * 109.87085 * 52.63722 * 21 19 18 23 23 C 1.54091 * 109.87993 * 173.64869 * 21 19 18 24 24 C 1.54818 * 104.18903 * 121.45184 * 23 21 19 25 25 C 1.54996 * 102.08966 * 20.88039 * 24 23 21 26 26 O 1.43742 * 109.87736 * 291.48237 * 21 19 18 27 27 C 1.47427 * 125.65173 * 180.02562 * 16 14 13 28 28 H 1.08997 * 109.47185 * 291.20665 * 1 2 3 29 29 H 1.09004 * 109.46488 * 51.20090 * 1 2 3 30 30 H 1.08999 * 109.47155 * 171.19631 * 1 2 3 31 31 H 1.08996 * 109.47159 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47120 * 299.99613 * 3 2 1 33 33 H 1.09002 * 109.47126 * 59.99770 * 3 2 1 34 34 H 0.97004 * 119.99483 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47250 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47336 * 299.99993 * 12 2 1 37 37 H 0.96999 * 120.00176 * 0.02562 * 13 12 2 38 38 H 1.08998 * 109.88380 * 300.51362 * 17 16 14 39 39 H 1.08997 * 109.88624 * 61.67970 * 17 16 14 40 40 H 1.09003 * 110.92360 * 264.10644 * 18 17 16 41 41 H 1.09000 * 110.73868 * 140.85713 * 18 17 16 42 42 H 1.08998 * 110.49059 * 240.13048 * 23 21 19 43 43 H 1.09002 * 110.48718 * 2.64449 * 23 21 19 44 44 H 1.09001 * 110.90869 * 139.07841 * 24 23 21 45 45 H 1.08994 * 110.90649 * 262.68413 * 24 23 21 46 46 H 1.09001 * 110.61290 * 81.47765 * 25 24 23 47 47 H 1.08998 * 110.61648 * 204.31642 * 25 24 23 48 48 H 1.09001 * 110.36350 * 274.67077 * 27 16 14 49 49 H 1.09001 * 110.36354 * 36.88433 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.7142 -1.5422 1.1333 6 6 1.6212 -0.2985 2.4804 7 7 1.7187 -1.1150 3.5069 8 14 0.9257 1.4191 2.7159 9 1 2.0394 2.3814 2.9127 10 1 0.1440 1.8057 1.5140 11 1 0.0407 1.4356 3.9083 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4453 14 6 1.8778 -0.4909 -3.6694 15 8 2.5768 -1.4796 -3.7810 16 7 1.4290 0.1447 -4.7699 17 6 0.5750 1.3414 -4.7798 18 6 0.2986 1.6949 -6.2563 19 6 0.5370 0.3460 -6.9849 20 1 -0.3452 -0.2913 -6.9256 21 6 0.9492 0.5743 -8.4406 22 1 1.7940 1.2618 -8.4829 23 6 1.3326 -0.7678 -9.0933 24 6 0.3665 -0.8943 -10.2965 25 6 -0.0650 0.5771 -10.5224 26 8 -0.1584 1.1101 -9.1838 27 6 1.7074 -0.2490 -6.1631 28 1 -0.3633 0.3717 0.9580 29 1 -0.3632 0.6440 -0.8010 30 1 -0.3633 -1.0155 -0.1573 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.4291 -0.8253 4.3862 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7490 -1.2491 37 1 0.9944 0.7582 -2.3564 38 1 -0.3626 1.1320 -4.2650 39 1 1.0908 2.1690 -4.2929 40 1 0.9954 2.4539 -6.6120 41 1 -0.7312 2.0272 -6.3873 42 1 2.3671 -0.7439 -9.4356 43 1 1.1824 -1.5894 -8.3929 44 1 0.8844 -1.2866 -11.1717 45 1 -0.4915 -1.5167 -10.0426 46 1 0.6892 1.1142 -11.0977 47 1 -1.0318 0.6209 -11.0239 48 1 2.6562 0.1732 -6.4942 49 1 1.7237 -1.3350 -6.2544 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:43 Heat of formation + Delta-G solvation = -64.015800 kcal Electronic energy + Delta-G solvation = -26609.328664 eV Core-core repulsion = 22957.810283 eV Total energy + Delta-G solvation = -3651.518381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48291 -39.54887 -37.64192 -36.45692 -33.41213 -32.64739 -32.18946 -31.30331 -29.87031 -27.71782 -26.32939 -25.80493 -24.90526 -23.53592 -22.85664 -21.69738 -20.59079 -19.64610 -19.16901 -17.96346 -17.03053 -16.56139 -16.09071 -15.70224 -15.54675 -15.49161 -14.98962 -14.45581 -14.08081 -13.96322 -13.62166 -13.44524 -13.12201 -12.94873 -12.84890 -12.69732 -12.55246 -12.38726 -12.19394 -12.08948 -11.97535 -11.66104 -11.48944 -11.25513 -11.14341 -10.94149 -10.83186 -10.41692 -10.29890 -10.19767 -10.05013 -10.01702 -9.81625 -9.19184 -8.73721 -8.68125 -8.37763 -8.23132 -6.15949 -4.08758 2.79922 3.25097 3.33196 3.38937 3.40843 3.54768 4.14864 4.16379 4.32986 4.37422 4.41545 4.53073 4.56520 4.64803 4.87348 4.93578 5.09347 5.14661 5.17997 5.20177 5.29328 5.37430 5.42380 5.46926 5.56726 5.63423 5.66414 5.71342 5.80140 5.84803 6.00162 6.09090 6.11394 6.23484 6.39886 6.51602 6.54843 6.57660 6.66812 6.74748 6.85740 7.03575 7.26201 7.31574 7.46411 7.76174 8.29666 8.47809 8.91852 8.95698 9.50699 10.97039 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002609 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.028705 B =10728.954803 C =11185.594551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.146 4.146 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.079 3.921 7 N -0.885 5.885 8 Si 0.875 3.125 9 H -0.285 1.285 10 H -0.246 1.246 11 H -0.303 1.303 12 C 0.160 3.840 13 N -0.735 5.735 14 C 0.718 3.282 15 O -0.593 6.593 16 N -0.642 5.642 17 C 0.098 3.902 18 C -0.118 4.118 19 C -0.102 4.102 20 H 0.092 0.908 21 C 0.090 3.910 22 H 0.072 0.928 23 C -0.156 4.156 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.371 6.371 27 C 0.136 3.864 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.392 0.608 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 6.571 -27.147 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 C -0.203 4.203 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.706 3.294 9 H -0.212 1.212 10 H -0.172 1.172 11 H -0.231 1.231 12 C 0.037 3.963 13 N -0.389 5.389 14 C 0.419 3.581 15 O -0.472 6.472 16 N -0.382 5.382 17 C -0.026 4.026 18 C -0.156 4.156 19 C -0.121 4.121 20 H 0.110 0.890 21 C 0.032 3.968 22 H 0.090 0.910 23 C -0.194 4.194 24 C -0.193 4.193 25 C -0.031 4.031 26 O -0.290 6.290 27 C 0.012 3.988 28 H 0.074 0.926 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.110 0.890 48 H 0.082 0.918 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.266 5.876 -26.804 27.770 hybrid contribution -0.438 1.252 0.312 1.363 sum -4.705 7.129 -26.492 27.835 Atomic orbital electron populations 1.22282 0.97827 0.99907 0.99724 1.18703 0.92471 0.92258 0.93676 1.22348 1.01062 0.98397 0.98503 1.20667 1.29646 1.16911 0.88160 0.90570 1.24938 0.94549 0.96946 0.96005 1.70024 1.46779 1.34438 1.00843 0.87495 0.79158 0.86130 0.76591 1.21212 1.17206 1.23147 1.21394 0.98314 0.95509 0.81083 1.45506 1.55779 1.33086 1.04553 1.15535 0.80309 0.82399 0.79813 1.90903 1.43185 1.27535 1.85555 1.47527 1.54969 1.30675 1.05040 1.22006 0.94705 0.87986 0.97894 1.22589 1.03100 0.96876 0.93025 1.22508 0.99232 0.97804 0.92560 0.88988 1.22647 0.89237 0.94143 0.90757 0.90995 1.23065 1.00273 0.98192 0.97866 1.23135 0.99935 0.97687 0.98572 1.23545 1.01840 0.92510 0.85209 1.88889 1.48041 1.69937 1.22095 1.21890 0.96587 1.00521 0.79766 0.92643 0.96069 0.93346 0.92942 0.95516 0.93906 0.92595 0.92251 0.92045 0.77332 0.91576 0.91593 0.90465 0.89698 0.90359 0.89821 0.90226 0.90421 0.92224 0.89014 0.91828 0.90280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 7.51 37.16 0.28 -2.64 16 2 C 0.03 0.67 0.50 -155.66 -0.08 0.59 16 3 C -0.15 -3.00 7.63 37.15 0.28 -2.71 16 4 C -0.52 -13.99 8.60 -34.44 -0.30 -14.29 16 5 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 6 C 0.08 2.20 5.23 -17.82 -0.09 2.11 16 7 N -0.88 -26.49 13.96 55.43 0.77 -25.71 16 8 Si 0.87 20.94 22.98 -169.99 -3.91 17.03 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.25 -5.36 4.61 56.52 0.26 -5.10 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 12 C 0.16 3.34 4.49 -4.04 -0.02 3.32 16 13 N -0.73 -12.97 4.96 -65.23 -0.32 -13.29 16 14 C 0.72 12.93 8.49 -86.92 -0.74 12.20 16 15 O -0.59 -12.98 16.60 5.29 0.09 -12.89 16 16 N -0.64 -8.79 3.33 -176.25 -0.59 -9.38 16 17 C 0.10 1.01 6.14 -3.07 -0.02 0.99 16 18 C -0.12 -0.99 6.34 -24.90 -0.16 -1.15 16 19 C -0.10 -0.89 2.66 -88.48 -0.24 -1.13 16 20 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 21 C 0.09 0.70 2.93 -26.16 -0.08 0.62 16 22 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 23 C -0.16 -1.02 6.24 -25.20 -0.16 -1.18 16 24 C -0.16 -0.87 7.15 -24.72 -0.18 -1.05 16 25 C 0.05 0.28 7.72 38.21 0.29 0.58 16 26 O -0.37 -3.29 11.09 -35.23 -0.39 -3.68 16 27 C 0.14 1.52 5.67 -2.54 -0.01 1.50 16 28 H 0.05 1.22 4.03 -51.93 -0.21 1.01 16 29 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 30 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 33 H 0.04 0.92 2.61 -51.93 -0.14 0.78 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.39 6.11 5.23 -40.82 -0.21 5.90 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.60 8.01 -51.93 -0.42 0.19 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.58 7.00 -51.93 -0.36 0.22 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 49 H 0.08 0.95 7.60 -51.93 -0.39 0.56 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.46 365.78 -8.52 -40.98 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.49 Total: 3.66 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.20 Total: -2.23 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.14 Total: -48.38 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.30 Total: -16.57 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -3.91 Total: 17.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.46 -8.52 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.034 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds