Wall clock time and date at job start Fri Apr 10 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47326 * 2 1 4 4 C 1.50705 * 109.46602 * 120.00298 * 2 1 3 5 5 H 1.07993 * 120.00405 * 124.70282 * 4 2 1 6 6 C 1.37879 * 119.99729 * 304.69310 * 4 2 1 7 7 N 1.31517 * 119.99485 * 159.96999 * 6 4 2 8 8 Si 1.86802 * 120.00273 * 339.97458 * 6 4 2 9 9 H 1.48500 * 109.47038 * 275.38043 * 8 6 4 10 10 H 1.48500 * 109.47040 * 35.37875 * 8 6 4 11 11 H 1.48501 * 109.46952 * 155.37883 * 8 6 4 12 12 C 1.52995 * 109.47048 * 239.99711 * 2 1 3 13 13 N 1.46498 * 109.47033 * 60.00332 * 12 2 1 14 14 C 1.34777 * 119.99798 * 179.97438 * 13 12 2 15 15 O 1.21592 * 120.00311 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00095 * 180.02562 * 14 13 12 17 17 C 1.47022 * 125.64592 * 359.69016 * 16 14 13 18 18 C 1.54319 * 107.27514 * 180.97119 * 17 16 14 19 19 C 1.55157 * 102.86264 * 22.52699 * 18 17 16 20 20 H 1.08995 * 111.00266 * 82.37698 * 19 18 17 21 21 C 1.53003 * 111.00256 * 206.23030 * 19 18 17 22 22 H 1.08999 * 109.87085 * 52.63722 * 21 19 18 23 23 C 1.54091 * 109.87993 * 173.64869 * 21 19 18 24 24 C 1.54818 * 104.18903 * 121.45184 * 23 21 19 25 25 C 1.54996 * 102.08966 * 20.88039 * 24 23 21 26 26 O 1.43742 * 109.87736 * 291.48237 * 21 19 18 27 27 C 1.47427 * 125.65173 * 180.02562 * 16 14 13 28 28 H 1.08997 * 109.47185 * 291.20665 * 1 2 3 29 29 H 1.09004 * 109.46488 * 51.20090 * 1 2 3 30 30 H 1.08999 * 109.47155 * 171.19631 * 1 2 3 31 31 H 1.08996 * 109.47159 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47120 * 299.99613 * 3 2 1 33 33 H 1.09002 * 109.47126 * 59.99770 * 3 2 1 34 34 H 0.97004 * 119.99483 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47250 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47336 * 299.99993 * 12 2 1 37 37 H 0.96999 * 120.00176 * 0.02562 * 13 12 2 38 38 H 1.08998 * 109.88380 * 300.51362 * 17 16 14 39 39 H 1.08997 * 109.88624 * 61.67970 * 17 16 14 40 40 H 1.09003 * 110.92360 * 264.10644 * 18 17 16 41 41 H 1.09000 * 110.73868 * 140.85713 * 18 17 16 42 42 H 1.08998 * 110.49059 * 240.13048 * 23 21 19 43 43 H 1.09002 * 110.48718 * 2.64449 * 23 21 19 44 44 H 1.09001 * 110.90869 * 139.07841 * 24 23 21 45 45 H 1.08994 * 110.90649 * 262.68413 * 24 23 21 46 46 H 1.09001 * 110.61290 * 81.47765 * 25 24 23 47 47 H 1.08998 * 110.61648 * 204.31642 * 25 24 23 48 48 H 1.09001 * 110.36350 * 274.67077 * 27 16 14 49 49 H 1.09001 * 110.36354 * 36.88433 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.7142 -1.5422 1.1333 6 6 1.6212 -0.2985 2.4804 7 7 1.7187 -1.1150 3.5069 8 14 0.9257 1.4191 2.7159 9 1 2.0394 2.3814 2.9127 10 1 0.1440 1.8057 1.5140 11 1 0.0407 1.4356 3.9083 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4453 14 6 1.8778 -0.4909 -3.6694 15 8 2.5768 -1.4796 -3.7810 16 7 1.4290 0.1447 -4.7699 17 6 0.5750 1.3414 -4.7798 18 6 0.2986 1.6949 -6.2563 19 6 0.5370 0.3460 -6.9849 20 1 -0.3452 -0.2913 -6.9256 21 6 0.9492 0.5743 -8.4406 22 1 1.7940 1.2618 -8.4829 23 6 1.3326 -0.7678 -9.0933 24 6 0.3665 -0.8943 -10.2965 25 6 -0.0650 0.5771 -10.5224 26 8 -0.1584 1.1101 -9.1838 27 6 1.7074 -0.2490 -6.1631 28 1 -0.3633 0.3717 0.9580 29 1 -0.3632 0.6440 -0.8010 30 1 -0.3633 -1.0155 -0.1573 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.4291 -0.8253 4.3862 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7490 -1.2491 37 1 0.9944 0.7582 -2.3564 38 1 -0.3626 1.1320 -4.2650 39 1 1.0908 2.1690 -4.2929 40 1 0.9954 2.4539 -6.6120 41 1 -0.7312 2.0272 -6.3873 42 1 2.3671 -0.7439 -9.4356 43 1 1.1824 -1.5894 -8.3929 44 1 0.8844 -1.2866 -11.1717 45 1 -0.4915 -1.5167 -10.0426 46 1 0.6892 1.1142 -11.0977 47 1 -1.0318 0.6209 -11.0239 48 1 2.6562 0.1732 -6.4942 49 1 1.7237 -1.3350 -6.2544 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408826.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:43 Heat of formation + Delta-G solvation = -86.540883 kcal Electronic energy + Delta-G solvation = -26610.305425 eV Core-core repulsion = 22957.810283 eV Total energy + Delta-G solvation = -3652.495142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49815 -40.45558 -38.86929 -37.96294 -35.05206 -33.80663 -33.11109 -32.71848 -30.63758 -28.59996 -27.98234 -27.32438 -26.78467 -24.60587 -23.44442 -22.33361 -21.40012 -20.91529 -20.83981 -19.23133 -18.05441 -17.80004 -17.17138 -17.13389 -16.72813 -16.52923 -16.26890 -15.60284 -15.41550 -14.87142 -14.75350 -14.58998 -14.50347 -14.37848 -14.02457 -13.94535 -13.86590 -13.68828 -13.41185 -13.20611 -12.91270 -12.61344 -12.40929 -12.29205 -12.14005 -12.05951 -12.00196 -11.75099 -11.74782 -11.55998 -11.40951 -11.34489 -11.12045 -10.60536 -10.55787 -10.38086 -10.17325 -9.48219 -8.31558 -6.28937 1.37067 1.39765 1.50956 1.59336 2.12575 2.35934 2.84434 3.00934 3.08796 3.53266 3.63512 3.76774 3.83622 4.01950 4.09386 4.10434 4.26713 4.33264 4.34274 4.42263 4.44375 4.47708 4.57335 4.64169 4.77064 4.82618 4.84113 4.84366 4.85773 4.87564 4.94046 4.98516 5.00686 5.04815 5.07437 5.15589 5.18256 5.23441 5.27677 5.35904 5.43433 5.56224 5.72886 5.81117 5.99043 6.06796 6.32314 6.73194 6.99841 7.33702 7.56026 8.85624 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002609 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.028705 B =10728.954803 C =11185.594551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.030 3.970 3 C -0.144 4.144 4 C -0.523 4.523 5 H 0.027 0.973 6 C 0.021 3.979 7 N -0.939 5.939 8 Si 0.936 3.064 9 H -0.281 1.281 10 H -0.200 1.200 11 H -0.311 1.311 12 C 0.177 3.823 13 N -0.723 5.723 14 C 0.713 3.287 15 O -0.640 6.640 16 N -0.638 5.638 17 C 0.090 3.910 18 C -0.109 4.109 19 C -0.091 4.091 20 H 0.084 0.916 21 C 0.092 3.908 22 H 0.080 0.920 23 C -0.159 4.159 24 C -0.153 4.153 25 C 0.041 3.959 26 O -0.390 6.390 27 C 0.132 3.868 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.406 0.594 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 9.845 -29.846 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 C -0.201 4.201 4 C -0.561 4.561 5 H 0.045 0.955 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.764 3.236 9 H -0.208 1.208 10 H -0.124 1.124 11 H -0.240 1.240 12 C 0.052 3.948 13 N -0.379 5.379 14 C 0.415 3.585 15 O -0.523 6.523 16 N -0.376 5.376 17 C -0.032 4.032 18 C -0.147 4.147 19 C -0.111 4.111 20 H 0.103 0.897 21 C 0.034 3.966 22 H 0.097 0.903 23 C -0.197 4.197 24 C -0.191 4.191 25 C -0.035 4.035 26 O -0.310 6.310 27 C 0.009 3.991 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.244 0.756 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.120 0.880 48 H 0.091 0.909 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.910 9.202 -29.578 31.535 hybrid contribution 0.118 0.107 1.057 1.068 sum -5.792 9.309 -28.522 30.557 Atomic orbital electron populations 1.22210 0.96118 1.00477 1.00793 1.18628 0.93691 0.93233 0.91549 1.22264 1.00915 0.96686 1.00250 1.20953 1.28538 1.15924 0.90727 0.95490 1.25832 0.95315 1.01158 0.95431 1.70173 1.49201 1.36879 1.01547 0.86505 0.78948 0.80357 0.77825 1.20821 1.12397 1.24024 1.20908 0.97030 0.94559 0.82289 1.45116 1.55968 1.33259 1.03558 1.15668 0.80112 0.82132 0.80616 1.90872 1.45311 1.29751 1.86333 1.47544 1.54294 1.31113 1.04668 1.22300 0.94493 0.86755 0.99674 1.22584 1.04145 0.96593 0.91354 1.22383 0.97700 0.97826 0.93147 0.89719 1.22627 0.89212 0.94798 0.89922 0.90255 1.23090 1.01139 0.97363 0.98081 1.23136 0.99672 0.97528 0.98725 1.23721 1.02864 0.92654 0.84290 1.88853 1.48434 1.70341 1.23323 1.22042 0.98202 0.99974 0.78868 0.93479 0.91779 0.94315 0.93536 0.91313 0.94281 0.92628 0.94209 0.94568 0.75647 0.90761 0.90262 0.89330 0.88499 0.89388 0.90749 0.88713 0.90868 0.91143 0.88045 0.90933 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 7.51 71.98 0.54 -4.86 16 2 C 0.03 1.31 0.50 -52.93 -0.03 1.29 16 3 C -0.14 -5.44 7.63 71.98 0.55 -4.89 16 4 C -0.52 -29.27 8.60 25.60 0.22 -29.05 16 5 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 6 C 0.02 1.19 5.23 84.65 0.44 1.63 16 7 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 8 Si 0.94 42.31 22.98 68.60 1.58 43.88 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.20 -7.61 4.61 99.48 0.46 -7.16 16 11 H -0.31 -14.45 7.11 99.48 0.71 -13.74 16 12 C 0.18 7.44 4.49 86.38 0.39 7.83 16 13 N -0.72 -24.26 4.96 -478.53 -2.37 -26.64 16 14 C 0.71 25.09 8.49 179.05 1.52 26.61 16 15 O -0.64 -28.54 16.60 -4.00 -0.07 -28.61 16 16 N -0.64 -16.26 3.33 -829.80 -2.76 -19.02 16 17 C 0.09 1.55 6.14 86.73 0.53 2.08 16 18 C -0.11 -1.45 6.34 31.78 0.20 -1.25 16 19 C -0.09 -1.40 2.66 -9.41 -0.03 -1.43 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 C 0.09 1.22 2.93 30.96 0.09 1.31 16 22 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 23 C -0.16 -1.81 6.24 31.58 0.20 -1.62 16 24 C -0.15 -1.42 7.15 31.90 0.23 -1.19 16 25 C 0.04 0.41 7.72 72.66 0.56 0.97 16 26 O -0.39 -5.96 11.09 -148.98 -1.65 -7.61 16 27 C 0.13 2.77 5.67 86.85 0.49 3.26 16 28 H 0.05 1.91 4.03 -2.39 -0.01 1.90 16 29 H 0.06 1.94 7.11 -2.39 -0.02 1.92 16 30 H 0.04 1.56 8.12 -2.39 -0.02 1.54 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.01 6.86 -2.39 -0.02 2.00 16 33 H 0.04 1.51 2.61 -2.39 -0.01 1.50 16 34 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.41 11.08 5.23 -92.71 -0.49 10.60 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.02 8.01 -2.39 -0.02 1.00 16 41 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.98 7.00 -2.39 -0.02 0.97 16 44 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 1.40 8.04 -2.39 -0.02 1.39 16 49 H 0.06 1.54 7.60 -2.39 -0.02 1.52 16 Total: -1.00 -74.09 365.78 1.13 -72.96 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.20 Total: 22.47 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 5.91 Total: 0.69 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.84 Total: -103.79 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.72 Total: -36.22 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.58 Total: 43.88 kcal Total: -74.09 1.13 -72.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408826.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.580 kcal (2) G-P(sol) polarization free energy of solvation -74.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds