Wall clock time and date at job start Fri Apr 10 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99788 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00528 * 179.97438 * 14 13 12 17 17 C 1.47026 * 125.64331 * 0.02961 * 16 14 13 18 18 C 1.54324 * 107.26845 * 181.02112 * 17 16 14 19 19 C 1.55153 * 102.94436 * 22.19136 * 18 17 16 20 20 H 1.08998 * 111.00772 * 82.57157 * 19 18 17 21 21 C 1.52998 * 111.00684 * 206.42406 * 19 18 17 22 22 H 1.08998 * 110.33098 * 307.24913 * 21 19 18 23 23 C 1.54481 * 110.37615 * 184.99911 * 21 19 18 24 24 C 1.54503 * 104.06315 * 217.19172 * 23 21 19 25 25 C 1.54471 * 104.06627 * 359.97438 * 24 23 21 26 26 O 1.44424 * 110.37201 * 69.61976 * 21 19 18 27 27 C 1.47422 * 125.65238 * 179.71835 * 16 14 13 28 28 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 29 29 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 30 30 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 33 33 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 34 34 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 37 37 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 38 38 H 1.08996 * 109.88272 * 300.43562 * 17 16 14 39 39 H 1.08996 * 109.88487 * 61.60329 * 17 16 14 40 40 H 1.08997 * 110.72119 * 140.55886 * 18 17 16 41 41 H 1.09004 * 110.71619 * 263.82600 * 18 17 16 42 42 H 1.09002 * 110.50636 * 335.83960 * 23 21 19 43 43 H 1.09000 * 110.50850 * 98.54166 * 23 21 19 44 44 H 1.09001 * 110.50990 * 118.64914 * 24 23 21 45 45 H 1.09008 * 110.50926 * 241.21322 * 24 23 21 46 46 H 1.09004 * 110.37299 * 142.81101 * 25 24 23 47 47 H 1.09001 * 110.37370 * 265.03689 * 25 24 23 48 48 H 1.08999 * 110.36613 * 274.74915 * 27 16 14 49 49 H 1.09008 * 110.36692 * 37.07223 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6422 -0.5355 4.4055 10 1 1.3588 -0.9387 5.1155 11 1 2.4973 -2.5587 3.7155 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5767 -1.4795 -3.7809 16 7 1.4281 0.1442 -4.7700 17 6 0.5790 1.3444 -4.7798 18 6 0.2984 1.6950 -6.2563 19 6 0.5367 0.3462 -6.9851 20 1 -0.3456 -0.2910 -6.9262 21 6 0.9492 0.5746 -8.4406 22 1 0.2317 1.2258 -8.9398 23 6 1.0610 -0.7739 -9.1860 24 6 2.2716 -0.5835 -10.1269 25 6 2.7477 0.8575 -9.8392 26 8 2.2757 1.1423 -8.5040 27 6 1.7117 -0.2457 -6.1631 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7164 1.1668 3.4844 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 0.9938 0.7578 -2.3564 38 1 -0.3585 1.1395 -4.2629 39 1 1.0991 2.1705 -4.2950 40 1 -0.7321 2.0261 -6.3849 41 1 0.9956 2.4538 -6.6116 42 1 1.2480 -1.5849 -8.4821 43 1 0.1562 -0.9679 -9.7620 44 1 3.0571 -1.3006 -9.8883 45 1 1.9658 -0.6860 -11.1681 46 1 3.8357 0.9122 -9.8763 47 1 2.3090 1.5522 -10.5555 48 1 2.6597 0.1807 -6.4909 49 1 1.7305 -1.3316 -6.2568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:46 Heat of formation + Delta-G solvation = -82.238218 kcal Electronic energy + Delta-G solvation = -26699.574602 eV Core-core repulsion = 23047.266038 eV Total energy + Delta-G solvation = -3652.308564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39774 -39.37825 -37.35321 -36.11703 -33.28184 -32.53195 -32.12140 -30.63105 -29.72649 -27.55230 -25.67639 -25.55438 -24.98485 -23.65910 -22.62446 -21.46715 -20.38407 -19.59940 -18.74235 -17.86845 -16.78596 -16.46683 -15.82843 -15.68121 -15.38032 -15.18322 -14.70611 -14.37552 -14.08361 -13.79946 -13.52471 -13.16168 -13.03760 -12.83087 -12.56399 -12.48851 -12.14935 -12.11338 -12.04354 -11.73266 -11.38712 -11.32721 -11.15254 -10.89753 -10.82961 -10.82527 -10.76364 -10.65374 -10.33383 -10.16683 -10.04536 -9.68585 -9.58025 -9.25650 -8.74478 -8.55366 -8.35677 -8.02235 -5.98340 -4.07946 3.02235 3.31200 3.37921 3.42574 3.54806 3.70531 4.12493 4.22530 4.41006 4.47633 4.57479 4.59251 4.68024 4.73478 4.92354 5.00806 5.21289 5.25654 5.28403 5.30201 5.36177 5.48031 5.50095 5.59551 5.63857 5.68512 5.71440 5.90786 5.96846 6.15368 6.23002 6.42594 6.48023 6.55007 6.56961 6.86181 6.87989 6.99419 7.08354 7.17833 7.40956 7.51748 7.60643 7.73859 8.05667 8.17108 8.42952 8.52636 8.92012 9.13123 9.57488 11.03169 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.002557 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.988840 B =10949.486897 C =11262.961685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.716 3.284 15 O -0.599 6.599 16 N -0.643 5.643 17 C 0.101 3.899 18 C -0.122 4.122 19 C -0.100 4.100 20 H 0.096 0.904 21 C 0.087 3.913 22 H 0.074 0.926 23 C -0.154 4.154 24 C -0.156 4.156 25 C 0.044 3.956 26 O -0.365 6.365 27 C 0.137 3.863 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.005 0.995 33 H 0.085 0.915 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.091 0.909 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 3.246 -24.585 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.417 3.583 15 O -0.478 6.478 16 N -0.383 5.383 17 C -0.023 4.023 18 C -0.160 4.160 19 C -0.119 4.119 20 H 0.114 0.886 21 C 0.029 3.971 22 H 0.091 0.909 23 C -0.191 4.191 24 C -0.194 4.194 25 C -0.033 4.033 26 O -0.284 6.284 27 C 0.014 3.986 28 H 0.103 0.897 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.024 0.976 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.833 2.683 -24.208 24.520 hybrid contribution -0.085 -0.123 0.680 0.696 sum -2.917 2.560 -23.528 23.846 Atomic orbital electron populations 1.21812 0.97814 0.99135 0.99921 1.18358 0.92780 0.92770 0.90548 1.21819 0.98595 0.98382 0.99958 1.20996 1.31391 1.11990 0.89861 0.92405 1.24883 0.94903 0.94949 0.98833 1.69811 1.36802 1.22790 1.23149 0.86566 0.78546 0.80152 0.82572 1.20736 1.21307 1.19906 1.21582 0.97882 0.95406 0.82419 1.45502 1.55567 1.33050 1.04400 1.15592 0.80291 0.82467 0.79909 1.90876 1.43413 1.27818 1.85662 1.47554 1.55004 1.30465 1.05242 1.21939 0.94739 0.88126 0.97506 1.22643 1.02475 0.97191 0.93693 1.22525 0.99037 0.97788 0.92554 0.88581 1.22841 0.85842 0.93330 0.95084 0.90854 1.23025 0.98701 0.98565 0.98858 1.22933 0.98448 0.97925 1.00072 1.23384 1.00342 0.94773 0.84757 1.89180 1.30022 1.78551 1.30602 1.21956 0.97575 0.99966 0.79130 0.89663 0.97631 0.95450 0.95449 0.97616 0.89619 0.93061 0.92997 0.93006 0.77177 0.91712 0.91631 0.90146 0.89869 0.90115 0.90478 0.90525 0.90685 0.89105 0.92395 0.90571 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 2 C 0.06 1.35 0.50 -155.66 -0.08 1.27 16 3 C -0.13 -3.02 8.07 37.16 0.30 -2.72 16 4 C -0.50 -13.49 8.01 -34.44 -0.28 -13.76 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.95 9.35 55.43 0.52 -23.43 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 C 0.15 3.39 4.50 -4.05 -0.02 3.37 16 13 N -0.73 -14.34 4.92 -65.23 -0.32 -14.66 16 14 C 0.72 14.20 8.49 -86.92 -0.74 13.46 16 15 O -0.60 -14.11 16.60 5.28 0.09 -14.02 16 16 N -0.64 -9.93 3.32 -176.10 -0.59 -10.51 16 17 C 0.10 1.18 6.15 -3.06 -0.02 1.17 16 18 C -0.12 -1.09 6.39 -24.90 -0.16 -1.25 16 19 C -0.10 -0.92 2.86 -88.36 -0.25 -1.18 16 20 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 21 C 0.09 0.69 3.04 -25.96 -0.08 0.61 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 23 C -0.15 -1.05 6.54 -25.17 -0.16 -1.21 16 24 C -0.16 -0.97 7.09 -25.17 -0.18 -1.15 16 25 C 0.04 0.31 7.63 37.93 0.29 0.60 16 26 O -0.36 -3.59 9.63 -35.23 -0.34 -3.93 16 27 C 0.14 1.80 5.84 -2.41 -0.01 1.79 16 28 H 0.08 2.16 6.08 -51.93 -0.32 1.84 16 29 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.00 0.10 6.86 -51.93 -0.36 -0.25 16 33 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.39 7.03 5.15 -40.82 -0.21 6.82 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.77 7.83 -51.93 -0.41 0.37 16 42 H 0.08 0.63 7.27 -51.93 -0.38 0.25 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 1.08 6.84 -51.93 -0.36 0.72 16 49 H 0.07 1.01 7.75 -51.92 -0.40 0.60 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -30.91 373.77 -9.76 -40.67 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.55 Total: 4.28 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.18 Total: -0.05 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -0.39 Total: -48.60 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.25 Total: -17.95 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.91 -9.76 -40.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.568 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds