Wall clock time and date at job start Fri Apr 10 2020 22:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47253 * 2 1 4 4 C 1.50702 * 109.46842 * 120.00059 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.52996 * 109.47068 * 239.99899 * 2 1 3 13 13 N 1.46493 * 109.47400 * 60.00416 * 12 2 1 14 14 C 1.34770 * 120.00393 * 179.97438 * 13 12 2 15 15 O 1.21593 * 119.99788 * 0.02562 * 14 13 12 16 16 N 1.34781 * 120.00528 * 179.97438 * 14 13 12 17 17 C 1.47026 * 125.64331 * 0.02961 * 16 14 13 18 18 C 1.54324 * 107.26845 * 181.02112 * 17 16 14 19 19 C 1.55153 * 102.94436 * 22.19136 * 18 17 16 20 20 H 1.08998 * 111.00772 * 82.57157 * 19 18 17 21 21 C 1.52998 * 111.00684 * 206.42406 * 19 18 17 22 22 H 1.08998 * 110.33098 * 307.24913 * 21 19 18 23 23 C 1.54481 * 110.37615 * 184.99911 * 21 19 18 24 24 C 1.54503 * 104.06315 * 217.19172 * 23 21 19 25 25 C 1.54471 * 104.06627 * 359.97438 * 24 23 21 26 26 O 1.44424 * 110.37201 * 69.61976 * 21 19 18 27 27 C 1.47422 * 125.65238 * 179.71835 * 16 14 13 28 28 H 1.09001 * 109.47094 * 300.00149 * 1 2 3 29 29 H 1.09003 * 109.46851 * 60.00175 * 1 2 3 30 30 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47084 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.47175 * 299.99940 * 3 2 1 33 33 H 1.09001 * 109.47192 * 59.99911 * 3 2 1 34 34 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47066 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.47234 * 299.99642 * 12 2 1 37 37 H 0.97000 * 120.00040 * 359.97438 * 13 12 2 38 38 H 1.08996 * 109.88272 * 300.43562 * 17 16 14 39 39 H 1.08996 * 109.88487 * 61.60329 * 17 16 14 40 40 H 1.08997 * 110.72119 * 140.55886 * 18 17 16 41 41 H 1.09004 * 110.71619 * 263.82600 * 18 17 16 42 42 H 1.09002 * 110.50636 * 335.83960 * 23 21 19 43 43 H 1.09000 * 110.50850 * 98.54166 * 23 21 19 44 44 H 1.09001 * 110.50990 * 118.64914 * 24 23 21 45 45 H 1.09008 * 110.50926 * 241.21322 * 24 23 21 46 46 H 1.09004 * 110.37299 * 142.81101 * 25 24 23 47 47 H 1.09001 * 110.37370 * 265.03689 * 25 24 23 48 48 H 1.08999 * 110.36613 * 274.74915 * 27 16 14 49 49 H 1.09008 * 110.36692 * 37.07223 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2360 2.4828 7 7 0.9477 0.8333 2.6034 8 14 2.3328 -1.1121 4.0079 9 1 3.6422 -0.5355 4.4055 10 1 1.3588 -0.9387 5.1155 11 1 2.4973 -2.5587 3.7155 12 6 2.0399 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6694 15 8 2.5767 -1.4795 -3.7809 16 7 1.4281 0.1442 -4.7700 17 6 0.5790 1.3444 -4.7798 18 6 0.2984 1.6950 -6.2563 19 6 0.5367 0.3462 -6.9851 20 1 -0.3456 -0.2910 -6.9262 21 6 0.9492 0.5746 -8.4406 22 1 0.2317 1.2258 -8.9398 23 6 1.0610 -0.7739 -9.1860 24 6 2.2716 -0.5835 -10.1269 25 6 2.7477 0.8575 -9.8392 26 8 2.2757 1.1423 -8.5040 27 6 1.7117 -0.2457 -6.1631 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7164 1.1668 3.4844 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7489 -1.2492 37 1 0.9938 0.7578 -2.3564 38 1 -0.3585 1.1395 -4.2629 39 1 1.0991 2.1705 -4.2950 40 1 -0.7321 2.0261 -6.3849 41 1 0.9956 2.4538 -6.6116 42 1 1.2480 -1.5849 -8.4821 43 1 0.1562 -0.9679 -9.7620 44 1 3.0571 -1.3006 -9.8883 45 1 1.9658 -0.6860 -11.1681 46 1 3.8357 0.9122 -9.8763 47 1 2.3090 1.5522 -10.5555 48 1 2.6597 0.1807 -6.4909 49 1 1.7305 -1.3316 -6.2568 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:45 Heat of formation + Delta-G solvation = -100.645887 kcal Electronic energy + Delta-G solvation = -26700.372818 eV Core-core repulsion = 23047.266038 eV Total energy + Delta-G solvation = -3653.106781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47221 -40.42425 -38.64019 -37.79923 -35.04410 -33.56181 -32.91722 -32.34134 -30.59589 -28.49999 -27.57702 -27.40841 -26.61177 -24.79678 -23.44690 -22.05540 -21.30981 -20.90698 -20.59013 -19.25619 -17.81795 -17.66901 -17.05010 -16.83131 -16.69383 -16.44226 -16.21048 -15.60881 -15.26152 -14.87729 -14.69225 -14.62530 -14.47134 -14.04827 -13.90777 -13.75764 -13.31323 -13.21876 -13.11716 -13.07062 -12.68958 -12.60042 -12.58622 -12.36776 -12.25733 -12.13494 -12.06403 -11.62478 -11.49856 -11.49173 -11.37564 -11.36501 -11.15316 -10.71678 -10.65006 -10.40316 -10.12377 -9.42996 -8.02339 -6.17942 1.43047 1.45385 1.53826 1.67034 2.13852 2.46189 2.97641 3.10033 3.21167 3.47655 3.58623 3.79564 3.92833 4.08110 4.11235 4.30069 4.36907 4.38102 4.43005 4.50929 4.54170 4.62765 4.68750 4.69407 4.82585 4.88525 4.91117 4.95418 4.99732 5.02893 5.04221 5.05502 5.09641 5.17983 5.18851 5.23922 5.30604 5.36584 5.39568 5.60774 5.66065 5.67157 5.98990 6.09353 6.13613 6.20727 6.43304 6.85622 7.02161 7.49492 7.57338 8.96968 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.036261 B = 0.002557 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.988840 B =10949.486897 C =11262.961685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.167 3.833 13 N -0.723 5.723 14 C 0.710 3.290 15 O -0.644 6.644 16 N -0.639 5.639 17 C 0.090 3.910 18 C -0.111 4.111 19 C -0.089 4.089 20 H 0.110 0.890 21 C 0.088 3.912 22 H 0.097 0.903 23 C -0.155 4.155 24 C -0.154 4.154 25 C 0.039 3.961 26 O -0.393 6.393 27 C 0.133 3.867 28 H 0.064 0.936 29 H 0.034 0.966 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.261 0.739 35 H 0.033 0.967 36 H 0.035 0.965 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.985 4.422 -26.349 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.201 1.201 12 C 0.043 3.957 13 N -0.378 5.378 14 C 0.411 3.589 15 O -0.527 6.527 16 N -0.377 5.377 17 C -0.032 4.032 18 C -0.148 4.148 19 C -0.108 4.108 20 H 0.128 0.872 21 C 0.030 3.970 22 H 0.115 0.885 23 C -0.192 4.192 24 C -0.192 4.192 25 C -0.037 4.037 26 O -0.313 6.313 27 C 0.010 3.990 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.241 0.759 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.116 0.884 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.426 3.906 -26.012 26.674 hybrid contribution 0.425 -0.475 1.169 1.332 sum -4.000 3.431 -24.843 25.396 Atomic orbital electron populations 1.21649 0.96982 0.98691 1.00286 1.18350 0.93370 0.92973 0.90066 1.21663 0.97860 0.97901 1.00291 1.21253 1.31848 1.12134 0.91514 0.93781 1.25457 0.95118 0.95608 1.00952 1.69905 1.36964 1.23241 1.23662 0.85732 0.78128 0.78985 0.79795 1.20499 1.20641 1.20140 1.21154 0.96599 0.94717 0.83244 1.45202 1.55755 1.33168 1.03708 1.15756 0.80116 0.82290 0.80715 1.90838 1.45430 1.29955 1.86430 1.47616 1.54295 1.31003 1.04809 1.22272 0.94437 0.86457 1.00068 1.22646 1.04345 0.96721 0.91108 1.22527 0.97520 0.97820 0.92904 0.87220 1.22952 0.85692 0.94201 0.94142 0.88505 1.23045 0.99841 0.97542 0.98797 1.22937 0.97978 0.97192 1.01108 1.23539 1.00537 0.95604 0.84048 1.89149 1.31063 1.78941 1.32172 1.22071 0.99131 0.99215 0.78557 0.91676 0.94728 0.96256 0.96443 0.94818 0.91588 0.92952 0.94876 0.94661 0.75945 0.90527 0.91453 0.86926 0.90011 0.91723 0.88403 0.91531 0.88697 0.89244 0.90684 0.91898 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 2 C 0.05 2.56 0.50 -52.93 -0.03 2.53 16 3 C -0.12 -5.51 8.07 71.98 0.58 -4.93 16 4 C -0.53 -28.75 8.01 25.60 0.21 -28.54 16 5 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -48.45 9.35 21.45 0.20 -48.25 16 8 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.17 7.69 4.50 86.38 0.39 8.08 16 13 N -0.72 -28.13 4.92 -478.55 -2.35 -30.49 16 14 C 0.71 28.35 8.49 179.06 1.52 29.87 16 15 O -0.64 -31.31 16.60 -4.01 -0.07 -31.37 16 16 N -0.64 -19.31 3.32 -829.31 -2.76 -22.07 16 17 C 0.09 1.91 6.15 86.73 0.53 2.44 16 18 C -0.11 -1.62 6.39 31.78 0.20 -1.41 16 19 C -0.09 -1.43 2.86 -9.33 -0.03 -1.46 16 20 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 21 C 0.09 1.17 3.04 31.10 0.09 1.26 16 22 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 23 C -0.15 -1.80 6.54 31.61 0.21 -1.59 16 24 C -0.15 -1.67 7.09 31.61 0.22 -1.44 16 25 C 0.04 0.49 7.63 72.48 0.55 1.04 16 26 O -0.39 -7.17 9.63 -148.98 -1.43 -8.60 16 27 C 0.13 3.46 5.84 86.93 0.51 3.97 16 28 H 0.06 3.26 6.08 -2.39 -0.01 3.25 16 29 H 0.03 1.33 6.86 -2.39 -0.02 1.31 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.03 1.32 6.86 -2.39 -0.02 1.30 16 33 H 0.07 3.33 6.06 -2.39 -0.01 3.32 16 34 H 0.26 13.49 8.31 -92.70 -0.77 12.72 16 35 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.40 13.80 5.15 -92.71 -0.48 13.32 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.27 7.83 -2.39 -0.02 1.25 16 42 H 0.06 0.96 7.27 -2.39 -0.02 0.94 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.06 1.81 6.84 -2.39 -0.02 1.80 16 49 H 0.05 1.59 7.75 -2.38 -0.02 1.57 16 Total: -1.00 -67.96 373.77 2.04 -65.91 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.45 Total: 22.62 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.98 Total: 6.94 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.91 Total: -100.81 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.50 Total: -39.98 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.96 2.04 -65.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.733 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds