Wall clock time and date at job start Fri Apr 10 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46602 * 119.99920 * 2 1 3 5 5 H 1.07993 * 120.00405 * 124.70282 * 4 2 1 6 6 C 1.37879 * 119.99729 * 304.69310 * 4 2 1 7 7 N 1.31517 * 119.99485 * 159.96999 * 6 4 2 8 8 Si 1.86802 * 120.00273 * 339.97458 * 6 4 2 9 9 H 1.48500 * 109.47038 * 275.38043 * 8 6 4 10 10 H 1.48500 * 109.47040 * 35.37875 * 8 6 4 11 11 H 1.48501 * 109.46952 * 155.37883 * 8 6 4 12 12 C 1.52995 * 109.47048 * 239.99333 * 2 1 3 13 13 N 1.46498 * 109.47033 * 60.00332 * 12 2 1 14 14 C 1.34777 * 119.99798 * 179.97438 * 13 12 2 15 15 O 1.21592 * 120.00311 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00095 * 180.02562 * 14 13 12 17 17 C 1.47022 * 125.64592 * 359.69016 * 16 14 13 18 18 C 1.54330 * 107.26653 * 178.85484 * 17 16 14 19 19 C 1.55156 * 103.02116 * 338.13673 * 18 17 16 20 20 H 1.08999 * 111.04027 * 277.22419 * 19 18 17 21 21 C 1.53003 * 111.00838 * 153.38236 * 19 18 17 22 22 H 1.08999 * 110.27402 * 65.64764 * 21 19 18 23 23 C 1.54944 * 110.31296 * 187.74297 * 21 19 18 24 24 C 1.55414 * 100.89370 * 155.28749 * 23 21 19 25 25 C 1.54387 * 102.30770 * 325.99110 * 24 23 21 26 26 O 1.43238 * 107.58907 * 21.28440 * 25 24 23 27 27 C 1.47427 * 125.65173 * 180.02562 * 16 14 13 28 28 H 1.08997 * 109.47185 * 291.21043 * 1 2 3 29 29 H 1.09004 * 109.46488 * 51.20468 * 1 2 3 30 30 H 1.08999 * 109.47155 * 171.20009 * 1 2 3 31 31 H 1.08998 * 109.46969 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46902 * 299.99274 * 3 2 1 33 33 H 1.08993 * 109.47641 * 59.99497 * 3 2 1 34 34 H 0.97004 * 119.99483 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47250 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47336 * 299.99993 * 12 2 1 37 37 H 0.96999 * 120.00176 * 0.02562 * 13 12 2 38 38 H 1.09003 * 109.88212 * 298.39622 * 17 16 14 39 39 H 1.08998 * 109.88553 * 59.56152 * 17 16 14 40 40 H 1.09005 * 110.84936 * 219.67311 * 18 17 16 41 41 H 1.08998 * 110.67610 * 96.52037 * 18 17 16 42 42 H 1.08993 * 111.12328 * 273.28049 * 23 21 19 43 43 H 1.08998 * 111.12115 * 37.44357 * 23 21 19 44 44 H 1.08997 * 110.88220 * 207.75672 * 24 23 21 45 45 H 1.08996 * 110.93278 * 84.25068 * 24 23 21 46 46 H 1.09000 * 109.82969 * 261.77196 * 25 24 23 47 47 H 1.09003 * 109.90112 * 140.84016 * 25 24 23 48 48 H 1.08998 * 110.36466 * 322.92994 * 27 16 14 49 49 H 1.08998 * 110.36543 * 85.14098 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.7142 -1.5421 1.1334 6 6 1.6212 -0.2984 2.4805 7 7 1.7187 -1.1147 3.5070 8 14 0.9257 1.4193 2.7158 9 1 2.0394 2.3816 2.9125 10 1 0.1440 1.8058 1.5138 11 1 0.0407 1.4359 3.9083 12 6 2.0400 -0.7214 -1.2491 13 7 1.5517 -0.0308 -2.4453 14 6 1.8778 -0.4912 -3.6694 15 8 2.5768 -1.4798 -3.7809 16 7 1.4290 0.1444 -4.7699 17 6 0.5750 1.3411 -4.7799 18 6 0.3430 1.7260 -6.2563 19 6 1.5362 1.0530 -6.9847 20 1 2.4308 1.6729 -6.9256 21 6 1.1845 0.7403 -8.4406 22 1 1.0292 1.6639 -8.9983 23 6 2.3077 -0.1017 -9.0965 24 6 1.5157 -0.8199 -10.2244 25 6 0.1316 -1.0286 -9.5732 26 8 0.0096 -0.0837 -8.5036 27 6 1.7074 -0.2494 -6.1631 28 1 -0.3633 0.3718 0.9580 29 1 -0.3632 0.6439 -0.8010 30 1 -0.3633 -1.0156 -0.1572 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8898 34 1 1.4291 -0.8250 4.3862 35 1 3.1300 -0.7218 -1.2489 36 1 1.6767 -1.7491 -1.2490 37 1 0.9944 0.7581 -2.3564 38 1 -0.3776 1.1208 -4.2981 39 1 1.0755 2.1580 -4.2601 40 1 0.3735 2.8080 -6.3846 41 1 -0.6043 1.3232 -6.6147 42 1 3.0883 0.5377 -9.5083 43 1 2.7231 -0.8204 -8.3902 44 1 1.9754 -1.7764 -10.4734 45 1 1.4371 -0.1874 -11.1085 46 1 0.0567 -2.0428 -9.1809 47 1 -0.6542 -0.8578 -10.3090 48 1 2.7266 -0.6246 -6.2548 49 1 0.9946 -1.0049 -6.4934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:48 Heat of formation + Delta-G solvation = -63.436848 kcal Electronic energy + Delta-G solvation = -26830.017159 eV Core-core repulsion = 23178.523883 eV Total energy + Delta-G solvation = -3651.493276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50681 -39.48342 -37.51104 -36.40712 -33.35165 -32.60056 -32.21878 -31.29243 -29.81624 -27.75382 -26.31401 -25.80090 -24.91260 -23.68997 -22.65718 -21.78575 -20.21559 -19.66273 -19.14615 -17.84592 -17.35382 -16.49040 -16.07348 -15.72278 -15.47941 -15.17763 -14.87337 -14.58471 -14.05523 -13.83240 -13.58931 -13.38861 -13.26512 -12.86971 -12.82451 -12.69065 -12.54056 -12.24781 -12.17210 -12.12505 -11.96076 -11.77332 -11.62720 -11.22676 -10.97014 -10.89814 -10.82366 -10.40151 -10.28160 -10.18396 -10.00051 -9.83830 -9.75329 -9.17683 -8.67221 -8.66660 -8.36232 -8.17306 -6.14840 -4.07541 2.90218 3.26009 3.34036 3.39707 3.43011 3.58909 4.06744 4.08858 4.37558 4.38501 4.49450 4.53135 4.58468 4.71664 4.86475 4.95903 5.11527 5.15867 5.22247 5.26452 5.34418 5.40704 5.46833 5.50731 5.55275 5.64058 5.73084 5.79512 5.84381 5.88744 6.06850 6.10712 6.13477 6.30264 6.41774 6.56514 6.59652 6.68882 6.70126 6.76423 6.88254 7.06551 7.28745 7.37213 7.48205 7.77656 8.34440 8.49638 8.93603 9.00435 9.51891 10.98202 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033951 B = 0.002733 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.525116 B =10243.072870 C =10580.459004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.030 3.970 3 C -0.146 4.146 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.079 3.921 7 N -0.885 5.885 8 Si 0.875 3.125 9 H -0.285 1.285 10 H -0.246 1.246 11 H -0.303 1.303 12 C 0.160 3.840 13 N -0.736 5.736 14 C 0.717 3.283 15 O -0.595 6.595 16 N -0.642 5.642 17 C 0.100 3.900 18 C -0.120 4.120 19 C -0.104 4.104 20 H 0.096 0.904 21 C 0.094 3.906 22 H 0.076 0.924 23 C -0.156 4.156 24 C -0.156 4.156 25 C 0.050 3.950 26 O -0.374 6.374 27 C 0.136 3.864 28 H 0.055 0.945 29 H 0.020 0.980 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.392 0.608 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.289 7.534 -27.281 28.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 C -0.203 4.203 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.124 4.124 7 N -0.521 5.521 8 Si 0.706 3.294 9 H -0.212 1.212 10 H -0.172 1.172 11 H -0.232 1.232 12 C 0.037 3.963 13 N -0.390 5.390 14 C 0.419 3.581 15 O -0.473 6.473 16 N -0.382 5.382 17 C -0.023 4.023 18 C -0.158 4.158 19 C -0.123 4.123 20 H 0.114 0.886 21 C 0.036 3.964 22 H 0.093 0.907 23 C -0.194 4.194 24 C -0.194 4.194 25 C -0.026 4.026 26 O -0.294 6.294 27 C 0.013 3.987 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.932 6.703 -26.892 27.869 hybrid contribution -0.444 1.351 0.229 1.441 sum -3.376 8.054 -26.663 28.057 Atomic orbital electron populations 1.22281 0.97831 0.99927 0.99701 1.18700 0.92466 0.92242 0.93683 1.22347 1.01042 0.98414 0.98483 1.20674 1.29622 1.16902 0.88173 0.90574 1.24936 0.94542 0.96943 0.95999 1.70025 1.46814 1.34446 1.00842 0.87496 0.79155 0.86149 0.76591 1.21220 1.17192 1.23153 1.21381 0.98270 0.95515 0.81119 1.45500 1.55849 1.33082 1.04577 1.15548 0.80277 0.82459 0.79829 1.90896 1.43328 1.27505 1.85585 1.47546 1.54686 1.30733 1.05196 1.21956 0.94719 0.87907 0.97757 1.22596 0.99196 1.00692 0.93346 1.22555 0.99186 0.97495 0.93087 0.88629 1.22795 0.84646 0.94102 0.94873 0.90667 1.23389 0.98277 0.99743 0.97950 1.23127 0.95686 1.01890 0.98675 1.23111 0.96701 0.93468 0.89342 1.88429 1.39451 1.48800 1.52729 1.21960 1.01528 0.95869 0.79355 0.92662 0.96061 0.93340 0.92958 0.95521 0.93921 0.92602 0.92301 0.92082 0.77379 0.91650 0.91827 0.90245 0.89536 0.89743 0.89663 0.89964 0.90632 0.91239 0.91515 0.90885 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 7.51 37.16 0.28 -2.68 16 2 C 0.03 0.68 0.50 -155.66 -0.08 0.60 16 3 C -0.15 -3.01 7.63 37.16 0.28 -2.73 16 4 C -0.52 -14.09 8.60 -34.44 -0.30 -14.39 16 5 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 6 C 0.08 2.21 5.23 -17.82 -0.09 2.12 16 7 N -0.89 -26.63 13.96 55.43 0.77 -25.85 16 8 Si 0.87 21.04 22.98 -169.99 -3.91 17.13 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.25 -5.39 4.61 56.52 0.26 -5.13 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 C 0.16 3.40 4.49 -4.04 -0.02 3.38 16 13 N -0.74 -13.28 4.96 -65.23 -0.32 -13.60 16 14 C 0.72 13.32 8.49 -86.92 -0.74 12.58 16 15 O -0.59 -13.35 16.60 5.29 0.09 -13.27 16 16 N -0.64 -9.20 3.33 -176.22 -0.59 -9.79 16 17 C 0.10 1.08 6.15 -3.06 -0.02 1.06 16 18 C -0.12 -1.01 6.37 -24.89 -0.16 -1.17 16 19 C -0.10 -0.89 3.06 -88.46 -0.27 -1.16 16 20 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 21 C 0.09 0.69 3.32 -25.70 -0.09 0.61 16 22 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 23 C -0.16 -0.98 6.49 -24.42 -0.16 -1.14 16 24 C -0.16 -0.86 7.02 -24.72 -0.17 -1.03 16 25 C 0.05 0.36 7.80 37.88 0.30 0.65 16 26 O -0.37 -3.49 9.25 -35.23 -0.33 -3.81 16 27 C 0.14 1.65 5.33 -2.52 -0.01 1.64 16 28 H 0.05 1.23 4.03 -51.93 -0.21 1.02 16 29 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 30 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.03 0.46 6.86 -51.92 -0.36 0.10 16 33 H 0.04 0.92 2.61 -51.93 -0.14 0.78 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.39 6.25 5.23 -40.82 -0.21 6.04 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.79 7.32 -51.93 -0.38 0.41 16 42 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.63 6.68 -51.93 -0.35 0.28 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 49 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -32.81 362.83 -8.45 -41.26 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.39 Total: 4.12 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.24 Total: -1.65 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: -0.14 Total: -49.25 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.24 Total: -17.08 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -3.91 Total: 17.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.81 -8.45 -41.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.172 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds