Wall clock time and date at job start Fri Apr 10 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 C 1.50705 * 109.46602 * 119.99920 * 2 1 3 5 5 H 1.07993 * 120.00405 * 124.70282 * 4 2 1 6 6 C 1.37879 * 119.99729 * 304.69310 * 4 2 1 7 7 N 1.31517 * 119.99485 * 159.96999 * 6 4 2 8 8 Si 1.86802 * 120.00273 * 339.97458 * 6 4 2 9 9 H 1.48500 * 109.47038 * 275.38043 * 8 6 4 10 10 H 1.48500 * 109.47040 * 35.37875 * 8 6 4 11 11 H 1.48501 * 109.46952 * 155.37883 * 8 6 4 12 12 C 1.52995 * 109.47048 * 239.99333 * 2 1 3 13 13 N 1.46498 * 109.47033 * 60.00332 * 12 2 1 14 14 C 1.34777 * 119.99798 * 179.97438 * 13 12 2 15 15 O 1.21592 * 120.00311 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00095 * 180.02562 * 14 13 12 17 17 C 1.47022 * 125.64592 * 359.69016 * 16 14 13 18 18 C 1.54330 * 107.26653 * 178.85484 * 17 16 14 19 19 C 1.55156 * 103.02116 * 338.13673 * 18 17 16 20 20 H 1.08999 * 111.04027 * 277.22419 * 19 18 17 21 21 C 1.53003 * 111.00838 * 153.38236 * 19 18 17 22 22 H 1.08999 * 110.27402 * 65.64764 * 21 19 18 23 23 C 1.54944 * 110.31296 * 187.74297 * 21 19 18 24 24 C 1.55414 * 100.89370 * 155.28749 * 23 21 19 25 25 C 1.54387 * 102.30770 * 325.99110 * 24 23 21 26 26 O 1.43238 * 107.58907 * 21.28440 * 25 24 23 27 27 C 1.47427 * 125.65173 * 180.02562 * 16 14 13 28 28 H 1.08997 * 109.47185 * 291.21043 * 1 2 3 29 29 H 1.09004 * 109.46488 * 51.20468 * 1 2 3 30 30 H 1.08999 * 109.47155 * 171.20009 * 1 2 3 31 31 H 1.08998 * 109.46969 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.46902 * 299.99274 * 3 2 1 33 33 H 1.08993 * 109.47641 * 59.99497 * 3 2 1 34 34 H 0.97004 * 119.99483 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47250 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47336 * 299.99993 * 12 2 1 37 37 H 0.96999 * 120.00176 * 0.02562 * 13 12 2 38 38 H 1.09003 * 109.88212 * 298.39622 * 17 16 14 39 39 H 1.08998 * 109.88553 * 59.56152 * 17 16 14 40 40 H 1.09005 * 110.84936 * 219.67311 * 18 17 16 41 41 H 1.08998 * 110.67610 * 96.52037 * 18 17 16 42 42 H 1.08993 * 111.12328 * 273.28049 * 23 21 19 43 43 H 1.08998 * 111.12115 * 37.44357 * 23 21 19 44 44 H 1.08997 * 110.88220 * 207.75672 * 24 23 21 45 45 H 1.08996 * 110.93278 * 84.25068 * 24 23 21 46 46 H 1.09000 * 109.82969 * 261.77196 * 25 24 23 47 47 H 1.09003 * 109.90112 * 140.84016 * 25 24 23 48 48 H 1.08998 * 110.36466 * 322.92994 * 27 16 14 49 49 H 1.08998 * 110.36543 * 85.14098 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.7142 -1.5421 1.1334 6 6 1.6212 -0.2984 2.4805 7 7 1.7187 -1.1147 3.5070 8 14 0.9257 1.4193 2.7158 9 1 2.0394 2.3816 2.9125 10 1 0.1440 1.8058 1.5138 11 1 0.0407 1.4359 3.9083 12 6 2.0400 -0.7214 -1.2491 13 7 1.5517 -0.0308 -2.4453 14 6 1.8778 -0.4912 -3.6694 15 8 2.5768 -1.4798 -3.7809 16 7 1.4290 0.1444 -4.7699 17 6 0.5750 1.3411 -4.7799 18 6 0.3430 1.7260 -6.2563 19 6 1.5362 1.0530 -6.9847 20 1 2.4308 1.6729 -6.9256 21 6 1.1845 0.7403 -8.4406 22 1 1.0292 1.6639 -8.9983 23 6 2.3077 -0.1017 -9.0965 24 6 1.5157 -0.8199 -10.2244 25 6 0.1316 -1.0286 -9.5732 26 8 0.0096 -0.0837 -8.5036 27 6 1.7074 -0.2494 -6.1631 28 1 -0.3633 0.3718 0.9580 29 1 -0.3632 0.6439 -0.8010 30 1 -0.3633 -1.0156 -0.1572 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8901 33 1 1.6767 1.9564 0.8898 34 1 1.4291 -0.8250 4.3862 35 1 3.1300 -0.7218 -1.2489 36 1 1.6767 -1.7491 -1.2490 37 1 0.9944 0.7581 -2.3564 38 1 -0.3776 1.1208 -4.2981 39 1 1.0755 2.1580 -4.2601 40 1 0.3735 2.8080 -6.3846 41 1 -0.6043 1.3232 -6.6147 42 1 3.0883 0.5377 -9.5083 43 1 2.7231 -0.8204 -8.3902 44 1 1.9754 -1.7764 -10.4734 45 1 1.4371 -0.1874 -11.1085 46 1 0.0567 -2.0428 -9.1809 47 1 -0.6542 -0.8578 -10.3090 48 1 2.7266 -0.6246 -6.2548 49 1 0.9946 -1.0049 -6.4934 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:47 Heat of formation + Delta-G solvation = -86.333130 kcal Electronic energy + Delta-G solvation = -26831.010016 eV Core-core repulsion = 23178.523883 eV Total energy + Delta-G solvation = -3652.486133 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51147 -40.47752 -38.79495 -37.90136 -35.04538 -33.76561 -33.09719 -32.75644 -30.60814 -28.67990 -27.98644 -27.33886 -26.80092 -24.77851 -23.34111 -22.38410 -21.14523 -20.92816 -20.77599 -19.16933 -18.07367 -18.02975 -17.20730 -17.11915 -16.75118 -16.62382 -15.80564 -15.73079 -15.38169 -14.95378 -14.75298 -14.53335 -14.51386 -14.28367 -14.05401 -13.99326 -13.75539 -13.69065 -13.52802 -13.14481 -12.90082 -12.64290 -12.41516 -12.36656 -12.19173 -12.13690 -12.00335 -11.75548 -11.59975 -11.51687 -11.43216 -11.33659 -11.12317 -10.56085 -10.41163 -10.38209 -10.16672 -9.45354 -8.31827 -6.29396 1.37122 1.39603 1.51027 1.62859 2.12954 2.35902 2.89437 3.01037 3.08882 3.47064 3.55836 3.75376 3.92606 4.04320 4.08451 4.13729 4.31357 4.33170 4.35196 4.39077 4.41877 4.50494 4.61453 4.72573 4.77229 4.83090 4.84504 4.85852 4.88031 4.93243 4.94599 4.96967 5.00678 5.04998 5.06547 5.12994 5.17699 5.25025 5.34357 5.41569 5.43073 5.55679 5.72646 5.80749 6.07599 6.15838 6.32032 6.72677 7.01031 7.33306 7.56415 8.85475 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033951 B = 0.002733 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.525116 B =10243.072870 C =10580.459004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.031 3.969 3 C -0.144 4.144 4 C -0.525 4.525 5 H 0.026 0.974 6 C 0.021 3.979 7 N -0.940 5.940 8 Si 0.936 3.064 9 H -0.280 1.280 10 H -0.201 1.201 11 H -0.311 1.311 12 C 0.177 3.823 13 N -0.723 5.723 14 C 0.711 3.289 15 O -0.643 6.643 16 N -0.638 5.638 17 C 0.090 3.910 18 C -0.111 4.111 19 C -0.093 4.093 20 H 0.111 0.889 21 C 0.093 3.907 22 H 0.097 0.903 23 C -0.157 4.157 24 C -0.150 4.150 25 C 0.043 3.957 26 O -0.398 6.398 27 C 0.132 3.868 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.039 0.961 36 H 0.034 0.966 37 H 0.406 0.594 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.058 0.942 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.770 11.500 -30.056 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.030 3.970 3 C -0.201 4.201 4 C -0.563 4.563 5 H 0.044 0.956 6 C -0.177 4.177 7 N -0.578 5.578 8 Si 0.764 3.236 9 H -0.207 1.207 10 H -0.124 1.124 11 H -0.240 1.240 12 C 0.052 3.948 13 N -0.379 5.379 14 C 0.413 3.587 15 O -0.526 6.526 16 N -0.376 5.376 17 C -0.032 4.032 18 C -0.148 4.148 19 C -0.112 4.112 20 H 0.129 0.871 21 C 0.036 3.964 22 H 0.115 0.885 23 C -0.195 4.195 24 C -0.188 4.188 25 C -0.033 4.033 26 O -0.318 6.318 27 C 0.009 3.991 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.244 0.756 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.447 10.719 -29.739 31.923 hybrid contribution 0.064 -0.036 1.023 1.025 sum -4.383 10.683 -28.716 30.951 Atomic orbital electron populations 1.22213 0.96162 1.00429 1.00812 1.18620 0.93651 0.93285 0.91475 1.22261 1.00927 0.96609 1.00280 1.20956 1.28587 1.15946 0.90767 0.95562 1.25839 0.95273 1.01219 0.95382 1.70175 1.49196 1.36917 1.01562 0.86493 0.78975 0.80285 0.77831 1.20706 1.12402 1.23986 1.20906 0.97010 0.94514 0.82356 1.45107 1.55996 1.33253 1.03522 1.15714 0.80106 0.82197 0.80694 1.90862 1.45518 1.29788 1.86390 1.47598 1.54075 1.31216 1.04694 1.22298 0.94322 0.86642 0.99953 1.22589 0.98556 1.02412 0.91260 1.22561 1.00086 0.95311 0.93252 0.87104 1.22917 0.84445 0.94850 0.94200 0.88524 1.23399 0.98558 0.99649 0.97868 1.23122 0.94441 1.02423 0.98800 1.23224 0.98145 0.92698 0.89227 1.88397 1.40390 1.49403 1.53626 1.22082 1.00251 0.97901 0.78843 0.93399 0.91799 0.94422 0.93506 0.91290 0.94221 0.92603 0.94222 0.94757 0.75646 0.91185 0.90105 0.87184 0.90162 0.87911 0.91427 0.89555 0.89003 0.92276 0.90437 0.92372 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.50 7.51 71.98 0.54 -4.96 16 2 C 0.03 1.36 0.50 -52.93 -0.03 1.33 16 3 C -0.14 -5.46 7.63 71.98 0.55 -4.91 16 4 C -0.52 -29.60 8.60 25.60 0.22 -29.38 16 5 H 0.03 1.68 7.99 -2.91 -0.02 1.66 16 6 C 0.02 1.21 5.23 84.65 0.44 1.65 16 7 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 8 Si 0.94 42.46 22.98 68.60 1.58 44.03 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 10 H -0.20 -7.65 4.61 99.48 0.46 -7.19 16 11 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 12 C 0.18 7.60 4.49 86.38 0.39 7.99 16 13 N -0.72 -25.02 4.96 -478.53 -2.37 -27.40 16 14 C 0.71 26.13 8.49 179.05 1.52 27.65 16 15 O -0.64 -29.78 16.60 -4.00 -0.07 -29.85 16 16 N -0.64 -17.33 3.33 -829.69 -2.76 -20.09 16 17 C 0.09 1.62 6.15 86.73 0.53 2.15 16 18 C -0.11 -1.43 6.37 31.78 0.20 -1.23 16 19 C -0.09 -1.33 3.06 -9.39 -0.03 -1.36 16 20 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 21 C 0.09 1.13 3.32 31.26 0.10 1.23 16 22 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 23 C -0.16 -1.67 6.49 32.09 0.21 -1.46 16 24 C -0.15 -1.36 7.02 31.90 0.22 -1.14 16 25 C 0.04 0.56 7.80 72.45 0.56 1.13 16 26 O -0.40 -6.73 9.25 -148.98 -1.38 -8.11 16 27 C 0.13 3.10 5.33 86.86 0.46 3.56 16 28 H 0.05 1.96 4.03 -2.39 -0.01 1.95 16 29 H 0.06 1.98 7.11 -2.39 -0.02 1.96 16 30 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.07 2.03 6.86 -2.38 -0.02 2.02 16 33 H 0.04 1.54 2.61 -2.39 -0.01 1.53 16 34 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 11.44 5.23 -92.71 -0.49 10.96 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 0.83 8.14 -2.38 -0.02 0.82 16 41 H 0.08 1.19 7.32 -2.39 -0.02 1.18 16 42 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.96 6.68 -2.39 -0.02 0.94 16 44 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 1.52 7.54 -2.39 -0.02 1.51 16 49 H 0.06 1.49 7.28 -2.39 -0.02 1.47 16 Total: -1.00 -76.14 362.83 1.40 -74.74 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.20 Total: 22.87 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.90 Total: 2.26 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.83 Total: -105.95 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.44 Total: -37.96 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.58 Total: 44.03 kcal Total: -76.14 1.40 -74.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.596 kcal (2) G-P(sol) polarization free energy of solvation -76.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds