Wall clock time and date at job start Fri Apr 10 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00237 * 2 1 3 5 5 H 1.07999 * 119.99816 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00344 * 60.00147 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46819 * 59.99744 * 8 6 4 10 10 H 1.48494 * 109.47285 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47196 * 300.00241 * 8 6 4 12 12 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 13 13 N 1.46506 * 109.46684 * 300.00056 * 12 2 1 14 14 C 1.34777 * 119.99873 * 180.02562 * 13 12 2 15 15 O 1.21592 * 119.99797 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99902 * 179.97438 * 14 13 12 17 17 C 1.47019 * 125.64846 * 359.68989 * 16 14 13 18 18 C 1.54342 * 107.26391 * 178.84715 * 17 16 14 19 19 C 1.55150 * 103.02063 * 338.14249 * 18 17 16 20 20 H 1.09005 * 111.03858 * 277.21676 * 19 18 17 21 21 C 1.52999 * 111.00551 * 153.38105 * 19 18 17 22 22 H 1.09005 * 110.32885 * 308.60085 * 21 19 18 23 23 C 1.54472 * 110.37435 * 186.34967 * 21 19 18 24 24 C 1.54513 * 104.06273 * 217.18970 * 23 21 19 25 25 C 1.54478 * 104.06329 * 359.97438 * 24 23 21 26 26 O 1.44421 * 110.37223 * 70.96234 * 21 19 18 27 27 C 1.47426 * 125.64606 * 179.97438 * 16 14 13 28 28 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 30 30 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 33 33 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 34 34 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47486 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47362 * 59.99268 * 12 2 1 37 37 H 0.96995 * 120.00050 * 359.72237 * 13 12 2 38 38 H 1.08995 * 109.88426 * 298.39755 * 17 16 14 39 39 H 1.08999 * 109.88168 * 59.56438 * 17 16 14 40 40 H 1.09003 * 110.84775 * 219.66974 * 18 17 16 41 41 H 1.08995 * 110.66397 * 96.52493 * 18 17 16 42 42 H 1.08998 * 110.51480 * 335.83078 * 23 21 19 43 43 H 1.09005 * 110.51195 * 98.40822 * 23 21 19 44 44 H 1.08998 * 110.51204 * 118.64853 * 24 23 21 45 45 H 1.09006 * 110.50924 * 241.21890 * 24 23 21 46 46 H 1.08995 * 110.37378 * 142.80984 * 25 24 23 47 47 H 1.09001 * 110.37194 * 265.03873 * 25 24 23 48 48 H 1.08998 * 110.37024 * 322.92854 * 27 16 14 49 49 H 1.09001 * 110.36638 * 85.14321 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.8281 -2.5198 -4.0083 10 1 1.8270 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4795 3.7810 16 7 1.4288 0.1447 4.7699 17 6 0.5853 1.3488 4.7798 18 6 0.3006 1.6966 6.2563 19 6 0.5378 0.3476 6.9851 20 1 -0.3451 -0.2891 6.9269 21 6 0.9506 0.5758 8.4406 22 1 1.7822 1.2787 8.4926 23 6 1.3362 -0.7636 9.1065 24 6 0.8036 -0.6318 10.5510 25 6 0.1599 0.7720 10.5870 26 8 -0.1702 1.0618 9.2108 27 6 1.7072 -0.2489 6.1631 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7081 1.1610 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7490 1.2492 37 1 0.9973 0.7603 2.3564 38 1 1.1103 2.1732 4.2972 39 1 -0.3521 1.1491 4.2606 40 1 -0.7296 2.0287 6.3850 41 1 0.9965 2.4556 6.6137 42 1 0.8533 -1.5969 8.5961 43 1 2.4186 -0.8926 9.1066 44 1 0.0575 -1.3999 10.7546 45 1 1.6226 -0.6968 11.2674 46 1 -0.7422 0.7603 11.1987 47 1 0.8690 1.5049 10.9719 48 1 1.7203 -1.3349 6.2551 49 1 2.6576 0.1706 6.4931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884408829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:50 Heat of formation + Delta-G solvation = -83.457699 kcal Electronic energy + Delta-G solvation = -26476.596944 eV Core-core repulsion = 22824.235498 eV Total energy + Delta-G solvation = -3652.361445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.37933 -39.45614 -37.49869 -36.16504 -33.34845 -32.57913 -32.15504 -30.65328 -29.80009 -27.59771 -25.69559 -25.57213 -24.96731 -23.44943 -22.80142 -21.51654 -20.57834 -19.59134 -18.77436 -17.93237 -17.00277 -16.41828 -15.88947 -15.80432 -15.34938 -15.26372 -14.73110 -14.30413 -14.07609 -13.81537 -13.55146 -13.26500 -13.04427 -12.85995 -12.64989 -12.58000 -12.24653 -12.14676 -12.03236 -11.67850 -11.39597 -11.34656 -11.16307 -11.02024 -10.88468 -10.82138 -10.80813 -10.70559 -10.35197 -10.18501 -10.10448 -9.75298 -9.59995 -9.28233 -8.77086 -8.64211 -8.37423 -8.09457 -5.99496 -4.09391 2.89175 3.32108 3.36137 3.40103 3.47583 3.64811 4.16201 4.25455 4.38002 4.44934 4.47496 4.57200 4.62682 4.74295 4.91302 4.98245 5.14712 5.23019 5.24626 5.27105 5.33529 5.37471 5.48599 5.56274 5.62514 5.67588 5.70881 5.75378 5.89997 6.03327 6.18376 6.39637 6.40194 6.50968 6.54424 6.82985 6.85885 6.96503 7.06157 7.13516 7.37184 7.45222 7.58810 7.72238 8.03861 8.15149 8.40562 8.46725 8.90116 9.06357 9.56081 11.01953 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.040421 B = 0.002427 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.550258 B =11533.174874 C =11944.930587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.730 5.730 14 C 0.716 3.284 15 O -0.598 6.598 16 N -0.642 5.642 17 C 0.098 3.902 18 C -0.119 4.119 19 C -0.097 4.097 20 H 0.093 0.907 21 C 0.088 3.912 22 H 0.073 0.927 23 C -0.154 4.154 24 C -0.156 4.156 25 C 0.044 3.956 26 O -0.368 6.368 27 C 0.137 3.863 28 H 0.005 0.995 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.005 0.995 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.079 0.921 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.628 3.225 24.173 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.384 5.384 14 C 0.418 3.582 15 O -0.477 6.477 16 N -0.382 5.382 17 C -0.026 4.026 18 C -0.157 4.157 19 C -0.117 4.117 20 H 0.112 0.888 21 C 0.030 3.970 22 H 0.091 0.909 23 C -0.192 4.192 24 C -0.194 4.194 25 C -0.033 4.033 26 O -0.287 6.287 27 C 0.013 3.987 28 H 0.024 0.976 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.229 0.771 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.108 0.892 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.349 2.658 23.878 24.140 hybrid contribution 0.224 -0.126 -0.754 0.797 sum -2.125 2.532 23.124 23.359 Atomic orbital electron populations 1.21816 0.97784 0.99165 0.99962 1.18358 0.92801 0.92769 0.90522 1.21818 0.98573 0.98372 0.99956 1.20947 1.31460 1.12082 0.89852 0.92456 1.24880 0.94890 0.94944 0.98830 1.69795 1.36661 1.22777 1.23290 0.86623 0.79227 0.79783 0.82158 1.20292 1.21363 1.20289 1.21602 0.97881 0.95451 0.82376 1.45514 1.55639 1.32881 1.04364 1.15579 0.80278 0.82437 0.79898 1.90882 1.43379 1.27768 1.85640 1.47519 1.55454 1.30288 1.04984 1.22005 0.94951 0.87883 0.97721 1.22605 1.03082 0.96788 0.93187 1.22389 0.99363 0.97910 0.91992 0.88844 1.22900 0.88991 0.94312 0.90781 0.90926 1.23032 1.02163 0.98560 0.95425 1.22941 1.01022 0.98124 0.97291 1.23393 1.00321 0.95090 0.84464 1.89151 1.40836 1.81897 1.16843 1.21843 0.96426 1.00525 0.79871 0.97621 0.89625 0.95442 0.95449 0.89619 0.97639 0.92980 0.92956 0.92938 0.77106 0.91488 0.91522 0.89655 0.90528 0.90191 0.90172 0.90658 0.90571 0.89155 0.92307 0.90306 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.50 -13.38 8.01 -34.44 -0.28 -13.66 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.78 9.35 55.43 0.52 -23.27 16 8 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.32 4.50 -4.04 -0.02 3.30 16 13 N -0.73 -13.93 4.92 -65.22 -0.32 -14.25 16 14 C 0.72 13.68 8.49 -86.92 -0.74 12.94 16 15 O -0.60 -13.59 16.60 5.28 0.09 -13.50 16 16 N -0.64 -9.38 3.33 -176.24 -0.59 -9.97 16 17 C 0.10 1.11 6.15 -3.06 -0.02 1.09 16 18 C -0.12 -1.07 6.38 -24.89 -0.16 -1.23 16 19 C -0.10 -0.91 2.72 -88.48 -0.24 -1.15 16 20 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 21 C 0.09 0.72 2.78 -25.96 -0.07 0.65 16 22 H 0.07 0.56 8.09 -51.93 -0.42 0.13 16 23 C -0.15 -1.09 6.09 -25.16 -0.15 -1.25 16 24 C -0.16 -0.93 7.09 -25.16 -0.18 -1.11 16 25 C 0.04 0.29 7.63 37.93 0.29 0.58 16 26 O -0.37 -3.46 11.31 -35.23 -0.40 -3.86 16 27 C 0.14 1.62 5.83 -2.54 -0.01 1.61 16 28 H 0.00 0.10 6.87 -51.93 -0.36 -0.26 16 29 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 33 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.39 6.86 5.15 -40.82 -0.21 6.65 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.63 8.00 -51.93 -0.42 0.22 16 42 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 1.00 8.04 -51.93 -0.42 0.59 16 49 H 0.06 0.70 8.04 -51.93 -0.42 0.28 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -30.33 376.79 -9.86 -40.19 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.67 Total: 3.77 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.15 Total: -0.67 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.39 Total: -47.49 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.31 Total: -17.36 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.33 -9.86 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.265 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds