Wall clock time and date at job start Fri Apr 10 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00237 * 2 1 3 5 5 H 1.07999 * 119.99816 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00344 * 60.00147 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46819 * 59.99744 * 8 6 4 10 10 H 1.48494 * 109.47285 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47196 * 300.00241 * 8 6 4 12 12 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 13 13 N 1.46506 * 109.46684 * 300.00056 * 12 2 1 14 14 C 1.34777 * 119.99873 * 180.02562 * 13 12 2 15 15 O 1.21592 * 119.99797 * 359.97438 * 14 13 12 16 16 N 1.34774 * 119.99902 * 179.97438 * 14 13 12 17 17 C 1.47019 * 125.64846 * 359.68989 * 16 14 13 18 18 C 1.54342 * 107.26391 * 178.84715 * 17 16 14 19 19 C 1.55150 * 103.02063 * 338.14249 * 18 17 16 20 20 H 1.09005 * 111.03858 * 277.21676 * 19 18 17 21 21 C 1.52999 * 111.00551 * 153.38105 * 19 18 17 22 22 H 1.09005 * 110.32885 * 308.60085 * 21 19 18 23 23 C 1.54472 * 110.37435 * 186.34967 * 21 19 18 24 24 C 1.54513 * 104.06273 * 217.18970 * 23 21 19 25 25 C 1.54478 * 104.06329 * 359.97438 * 24 23 21 26 26 O 1.44421 * 110.37223 * 70.96234 * 21 19 18 27 27 C 1.47426 * 125.64606 * 179.97438 * 16 14 13 28 28 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 30 30 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 33 33 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 34 34 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.47486 * 179.97438 * 12 2 1 36 36 H 1.09001 * 109.47362 * 59.99268 * 12 2 1 37 37 H 0.96995 * 120.00050 * 359.72237 * 13 12 2 38 38 H 1.08995 * 109.88426 * 298.39755 * 17 16 14 39 39 H 1.08999 * 109.88168 * 59.56438 * 17 16 14 40 40 H 1.09003 * 110.84775 * 219.66974 * 18 17 16 41 41 H 1.08995 * 110.66397 * 96.52493 * 18 17 16 42 42 H 1.08998 * 110.51480 * 335.83078 * 23 21 19 43 43 H 1.09005 * 110.51195 * 98.40822 * 23 21 19 44 44 H 1.08998 * 110.51204 * 118.64853 * 24 23 21 45 45 H 1.09006 * 110.50924 * 241.21890 * 24 23 21 46 46 H 1.08995 * 110.37378 * 142.80984 * 25 24 23 47 47 H 1.09001 * 110.37194 * 265.03873 * 25 24 23 48 48 H 1.08998 * 110.37024 * 322.92854 * 27 16 14 49 49 H 1.09001 * 110.36638 * 85.14321 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.8281 -2.5198 -4.0083 10 1 1.8270 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4795 3.7810 16 7 1.4288 0.1447 4.7699 17 6 0.5853 1.3488 4.7798 18 6 0.3006 1.6966 6.2563 19 6 0.5378 0.3476 6.9851 20 1 -0.3451 -0.2891 6.9269 21 6 0.9506 0.5758 8.4406 22 1 1.7822 1.2787 8.4926 23 6 1.3362 -0.7636 9.1065 24 6 0.8036 -0.6318 10.5510 25 6 0.1599 0.7720 10.5870 26 8 -0.1702 1.0618 9.2108 27 6 1.7072 -0.2489 6.1631 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.7081 1.1610 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6766 -1.7490 1.2492 37 1 0.9973 0.7603 2.3564 38 1 1.1103 2.1732 4.2972 39 1 -0.3521 1.1491 4.2606 40 1 -0.7296 2.0287 6.3850 41 1 0.9965 2.4556 6.6137 42 1 0.8533 -1.5969 8.5961 43 1 2.4186 -0.8926 9.1066 44 1 0.0575 -1.3999 10.7546 45 1 1.6226 -0.6968 11.2674 46 1 -0.7422 0.7603 11.1987 47 1 0.8690 1.5049 10.9719 48 1 1.7203 -1.3349 6.2551 49 1 2.6576 0.1706 6.4931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884408829.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:49 Heat of formation + Delta-G solvation = -101.211526 kcal Electronic energy + Delta-G solvation = -26477.366807 eV Core-core repulsion = 22824.235498 eV Total energy + Delta-G solvation = -3653.131309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46233 -40.40606 -38.73459 -37.83833 -35.04850 -33.62116 -32.92384 -32.34548 -30.64508 -28.48358 -27.57112 -27.40368 -26.60532 -24.59539 -23.49216 -22.18055 -21.41876 -20.88686 -20.58713 -19.25349 -17.82553 -17.79550 -17.11549 -16.79929 -16.69543 -16.40312 -16.37733 -15.47989 -15.25723 -14.87394 -14.65308 -14.58953 -14.45918 -14.04282 -13.90656 -13.88748 -13.36430 -13.23843 -13.11922 -13.06996 -12.67225 -12.62428 -12.60185 -12.28174 -12.24923 -12.13488 -12.11243 -11.72044 -11.50841 -11.48978 -11.43757 -11.37609 -11.15112 -10.71576 -10.69039 -10.39530 -10.12942 -9.46754 -8.01524 -6.17223 1.45192 1.45795 1.52344 1.63112 2.13356 2.46511 2.85388 3.09468 3.21933 3.50132 3.63089 3.79685 3.85943 4.02579 4.10480 4.25132 4.33971 4.39804 4.41702 4.48112 4.52161 4.56891 4.63919 4.70126 4.78781 4.82889 4.89306 4.95606 4.97698 5.02226 5.04090 5.04880 5.10273 5.16829 5.19230 5.20646 5.26575 5.35252 5.37323 5.61146 5.66715 5.67644 5.93961 6.07335 6.14312 6.21415 6.43806 6.86338 7.00744 7.50160 7.56859 8.97471 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.040421 B = 0.002427 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.550258 B =11533.174874 C =11944.930587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.045 0.955 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.724 5.724 14 C 0.712 3.288 15 O -0.640 6.640 16 N -0.639 5.639 17 C 0.091 3.909 18 C -0.109 4.109 19 C -0.087 4.087 20 H 0.085 0.915 21 C 0.091 3.909 22 H 0.083 0.917 23 C -0.157 4.157 24 C -0.153 4.153 25 C 0.039 3.961 26 O -0.389 6.389 27 C 0.134 3.866 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.018 4.353 25.837 26.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.414 3.586 15 O -0.523 6.523 16 N -0.377 5.377 17 C -0.032 4.032 18 C -0.147 4.147 19 C -0.106 4.106 20 H 0.104 0.896 21 C 0.033 3.967 22 H 0.101 0.899 23 C -0.195 4.195 24 C -0.191 4.191 25 C -0.038 4.038 26 O -0.309 6.309 27 C 0.011 3.989 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.240 0.760 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.118 0.882 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.771 3.827 25.586 26.018 hybrid contribution 0.326 -0.468 -1.194 1.323 sum -2.445 3.360 24.392 24.743 Atomic orbital electron populations 1.21656 0.97139 0.98622 1.00258 1.18355 0.93247 0.93073 0.90154 1.21654 0.97927 0.97806 1.00269 1.21223 1.31818 1.12216 0.91477 0.93692 1.25459 0.95140 0.95619 1.00966 1.69896 1.36894 1.23273 1.23703 0.85799 0.78625 0.78781 0.79490 1.20295 1.20759 1.20243 1.21158 0.96718 0.94679 0.83155 1.45220 1.55868 1.33018 1.03765 1.15700 0.80109 0.82221 0.80616 1.90848 1.45318 1.29755 1.86366 1.47546 1.54715 1.30685 1.04770 1.22271 0.94560 0.86609 0.99731 1.22597 1.04188 0.96679 0.91192 1.22261 0.97831 0.97793 0.92711 0.89630 1.22880 0.89002 0.95049 0.89783 0.89926 1.23058 1.02634 0.97714 0.96106 1.22943 1.01484 0.97852 0.96781 1.23578 1.01212 0.95622 0.83344 1.89117 1.41419 1.82137 1.18218 1.22011 0.98113 1.00074 0.78749 0.94790 0.91712 0.96358 0.96291 0.91722 0.94760 0.92978 0.94592 0.94670 0.75954 0.90624 0.91144 0.88455 0.89174 0.91160 0.89410 0.90632 0.89075 0.88233 0.91164 0.91670 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.08 71.98 0.58 -4.82 16 2 C 0.05 2.48 0.50 -52.93 -0.03 2.46 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.79 16 4 C -0.53 -28.39 8.01 25.60 0.21 -28.18 16 5 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.49 5.15 84.65 0.44 1.92 16 7 N -0.90 -48.20 9.35 21.45 0.20 -48.00 16 8 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.17 7.49 4.50 86.38 0.39 7.88 16 13 N -0.72 -27.15 4.92 -478.52 -2.35 -29.50 16 14 C 0.71 26.96 8.49 179.06 1.52 28.48 16 15 O -0.64 -29.56 16.60 -4.01 -0.07 -29.63 16 16 N -0.64 -17.91 3.33 -829.77 -2.76 -20.67 16 17 C 0.09 1.84 6.15 86.74 0.53 2.38 16 18 C -0.11 -1.67 6.38 31.79 0.20 -1.46 16 19 C -0.09 -1.47 2.72 -9.41 -0.03 -1.50 16 20 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 21 C 0.09 1.30 2.78 31.09 0.09 1.38 16 22 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 23 C -0.16 -1.98 6.09 31.61 0.19 -1.79 16 24 C -0.15 -1.50 7.09 31.61 0.22 -1.28 16 25 C 0.04 0.42 7.63 72.48 0.55 0.98 16 26 O -0.39 -6.46 11.31 -148.98 -1.68 -8.15 16 27 C 0.13 3.01 5.83 86.85 0.51 3.51 16 28 H 0.03 1.30 6.87 -2.39 -0.02 1.29 16 29 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 30 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 33 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.40 13.36 5.15 -92.71 -0.48 12.88 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.09 1.18 8.00 -2.39 -0.02 1.16 16 42 H 0.07 1.01 7.87 -2.39 -0.02 0.99 16 43 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.62 8.14 -2.38 -0.02 0.61 16 46 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.06 1.65 8.04 -2.39 -0.02 1.64 16 49 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 Total: -1.00 -65.21 376.79 1.76 -63.45 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.44 Total: 22.36 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.96 Total: 5.16 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -4.91 Total: -98.17 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -1.75 Total: -37.77 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -65.21 1.76 -63.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884408829.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.763 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds