Wall clock time and date at job start Fri Apr 10 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 C 1.50698 * 109.47486 * 240.00315 * 2 1 3 5 5 H 1.08001 * 119.99993 * 241.35266 * 4 2 1 6 6 C 1.37878 * 120.00088 * 61.33724 * 4 2 1 7 7 N 1.31513 * 120.00044 * 193.97576 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 13.98882 * 6 4 2 9 9 H 1.48505 * 109.47616 * 84.54140 * 8 6 4 10 10 H 1.48494 * 109.47182 * 204.54258 * 8 6 4 11 11 H 1.48502 * 109.47085 * 324.54326 * 8 6 4 12 12 C 1.52999 * 109.47199 * 120.00049 * 2 1 3 13 13 N 1.46502 * 109.47150 * 300.00220 * 12 2 1 14 14 C 1.34778 * 120.00124 * 180.02562 * 13 12 2 15 15 O 1.21587 * 119.99839 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99959 * 179.97438 * 14 13 12 17 17 C 1.48083 * 127.00857 * 359.97438 * 16 14 13 18 18 C 1.54905 * 103.23702 * 219.65239 * 17 16 14 19 19 C 1.54549 * 102.98226 * 322.53297 * 18 17 16 20 20 C 1.53008 * 111.95399 * 143.32147 * 19 18 17 21 21 O 1.42899 * 109.47052 * 62.50544 * 20 19 18 22 22 C 1.54341 * 109.45838 * 268.03188 * 19 18 17 23 23 C 1.55063 * 103.90904 * 87.59130 * 22 19 18 24 24 C 1.54067 * 102.56844 * 39.40699 * 23 22 19 25 25 C 1.47387 * 127.00487 * 179.97438 * 16 14 13 26 26 H 1.09003 * 111.76077 * 32.05715 * 25 16 14 27 27 H 1.08994 * 109.47322 * 309.36633 * 1 2 3 28 28 H 1.08994 * 109.47187 * 69.37031 * 1 2 3 29 29 H 1.09001 * 109.46847 * 189.36815 * 1 2 3 30 30 H 1.09001 * 109.47111 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47515 * 300.00039 * 3 2 1 32 32 H 1.08999 * 109.47007 * 60.00371 * 3 2 1 33 33 H 0.97005 * 119.99823 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47276 * 180.02562 * 12 2 1 35 35 H 1.08996 * 109.47518 * 60.00101 * 12 2 1 36 36 H 0.96997 * 119.99938 * 359.97438 * 13 12 2 37 37 H 1.08996 * 110.66587 * 101.21706 * 17 16 14 38 38 H 1.09004 * 110.66664 * 338.09038 * 17 16 14 39 39 H 1.08996 * 110.71458 * 204.15417 * 18 17 16 40 40 H 1.08998 * 110.85846 * 80.97862 * 18 17 16 41 41 H 1.09004 * 109.46910 * 182.50202 * 20 19 18 42 42 H 1.08997 * 109.47118 * 302.50715 * 20 19 18 43 43 H 0.96692 * 114.00152 * 179.97438 * 21 20 19 44 44 H 1.08997 * 110.54402 * 206.20098 * 22 19 18 45 45 H 1.09006 * 110.54032 * 328.98580 * 22 19 18 46 46 H 1.08995 * 110.90698 * 158.34109 * 23 22 19 47 47 H 1.09002 * 110.90269 * 281.90528 * 23 22 19 48 48 H 1.09005 * 111.45131 * 201.91525 * 24 23 22 49 49 H 1.09002 * 109.15714 * 79.48308 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4818 -2.7084 10 1 0.2470 1.5865 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7811 16 7 1.4288 0.1448 4.7700 17 6 0.5746 1.3536 4.8150 18 6 1.1765 2.1697 5.9861 19 6 1.5631 1.0769 7.0082 20 6 2.8625 1.4142 7.7423 21 8 2.6870 2.6178 8.4925 22 6 0.3909 0.8497 7.9862 23 6 -0.4853 -0.2150 7.2768 24 6 0.5659 -1.1604 6.6644 25 6 1.6880 -0.2217 6.1739 26 1 2.6694 -0.6795 6.2974 27 1 -0.3633 0.6518 0.7944 28 1 -0.3633 0.3621 -0.9617 29 1 -0.3633 -1.0140 0.1673 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6980 -0.6297 -4.4269 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9942 0.7582 2.3564 37 1 -0.4607 1.0855 5.0252 38 1 0.6468 1.9107 3.8809 39 1 0.4324 2.8457 6.4074 40 1 2.0577 2.7228 5.6612 41 1 3.1200 0.5990 8.4185 42 1 3.6644 1.5519 7.0170 43 1 3.4726 2.8924 8.9849 44 1 0.7567 0.4700 8.9401 45 1 -0.1708 1.7726 8.1308 46 1 -1.1186 -0.7378 7.9935 47 1 -1.0858 0.2382 6.4881 48 1 0.1528 -1.7301 5.8320 49 1 0.9392 -1.8300 7.4392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889223841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:52 Heat of formation + Delta-G solvation = -63.469774 kcal Electronic energy + Delta-G solvation = -27521.184761 eV Core-core repulsion = 23869.690058 eV Total energy + Delta-G solvation = -3651.494704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06433 -38.94343 -36.89204 -36.48786 -34.28018 -33.08868 -31.80192 -31.37630 -29.24666 -27.72766 -26.38903 -25.71553 -24.90488 -24.47806 -22.89089 -21.21765 -19.69774 -19.24089 -19.03186 -17.83204 -17.41735 -16.71795 -16.09308 -15.47774 -15.34607 -15.12065 -14.91785 -14.79723 -14.00135 -13.87484 -13.62219 -13.22916 -13.09424 -12.92950 -12.81761 -12.56017 -12.36907 -12.21020 -12.04472 -12.00837 -11.67506 -11.44986 -11.25213 -11.13723 -11.01243 -10.77834 -10.57549 -10.41331 -10.29136 -10.22103 -10.16451 -10.05766 -9.78452 -9.12723 -8.75972 -8.68135 -8.47238 -8.24124 -6.14176 -4.11284 2.79113 3.24160 3.31187 3.38727 3.50953 3.70890 4.21803 4.22951 4.35916 4.38631 4.55151 4.77585 4.81541 5.00231 5.02904 5.15465 5.16345 5.16692 5.29375 5.34093 5.41071 5.49333 5.59010 5.67619 5.76539 5.77516 5.80469 5.87603 5.94679 6.05643 6.08797 6.09831 6.13333 6.28565 6.37538 6.50885 6.55011 6.64307 6.71669 6.84187 7.01628 7.23460 7.28384 7.34633 7.44444 7.73619 8.30206 8.47421 8.90983 8.96077 9.49752 10.98960 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.003275 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.820588 B = 8548.364607 C = 8806.841232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.161 3.839 13 N -0.736 5.736 14 C 0.721 3.279 15 O -0.592 6.592 16 N -0.637 5.637 17 C 0.097 3.903 18 C -0.113 4.113 19 C -0.073 4.073 20 C 0.095 3.905 21 O -0.569 6.569 22 C -0.101 4.101 23 C -0.129 4.129 24 C -0.133 4.133 25 C 0.164 3.836 26 H 0.090 0.910 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.391 0.609 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.379 0.621 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 7.898 24.559 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.214 1.214 10 H -0.234 1.234 11 H -0.176 1.176 12 C 0.038 3.962 13 N -0.391 5.391 14 C 0.423 3.577 15 O -0.471 6.471 16 N -0.376 5.376 17 C -0.027 4.027 18 C -0.151 4.151 19 C -0.074 4.074 20 C 0.017 3.983 21 O -0.374 6.374 22 C -0.138 4.138 23 C -0.166 4.166 24 C -0.171 4.171 25 C 0.058 3.942 26 H 0.108 0.892 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.226 0.774 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.225 0.775 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.592 7.011 24.012 25.271 hybrid contribution 0.031 1.378 -0.180 1.390 sum -3.561 8.389 23.831 25.514 Atomic orbital electron populations 1.22275 0.97863 0.99809 0.99804 1.18727 0.92507 0.92251 0.93768 1.22343 1.01188 0.98334 0.98398 1.20720 1.34026 1.12334 0.87954 0.90488 1.24967 0.94680 0.97289 0.95776 1.69953 1.48226 1.35902 0.98713 0.87292 0.79329 0.85595 0.75957 1.21371 1.23405 1.17557 1.21384 0.98329 0.95453 0.81052 1.45521 1.55970 1.33066 1.04543 1.15493 0.80108 0.82385 0.79719 1.90903 1.43209 1.27450 1.85521 1.47872 1.54401 1.30772 1.04517 1.22568 0.94826 0.86070 0.99191 1.22680 1.01435 0.96452 0.94518 1.22072 0.95111 0.95079 0.95130 1.22062 0.95859 0.86578 0.93783 1.86458 1.41473 1.42988 1.66476 1.22394 0.94920 0.99171 0.97364 1.22523 0.97543 0.96935 0.99621 1.22614 0.96185 0.97657 1.00692 1.21853 0.99326 0.93347 0.79626 0.89222 0.96113 0.92572 0.93400 0.92797 0.94086 0.95369 0.92564 0.92230 0.92086 0.77388 0.90857 0.90650 0.89920 0.90822 0.93313 0.93320 0.77481 0.91381 0.90987 0.91372 0.91286 0.90658 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.53 37.16 0.28 -2.61 16 2 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 3 C -0.15 -2.99 7.52 37.16 0.28 -2.71 16 4 C -0.51 -13.88 8.62 -34.44 -0.30 -14.18 16 5 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 6 C 0.08 2.11 5.32 -17.82 -0.09 2.01 16 7 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 8 Si 0.89 21.17 22.79 -169.99 -3.87 17.29 16 9 H -0.29 -6.81 7.10 56.52 0.40 -6.41 16 10 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.25 -5.42 4.65 56.52 0.26 -5.16 16 12 C 0.16 3.33 4.49 -4.04 -0.02 3.31 16 13 N -0.74 -12.82 4.98 -65.22 -0.32 -13.14 16 14 C 0.72 12.79 8.54 -86.92 -0.74 12.04 16 15 O -0.59 -12.82 16.69 5.29 0.09 -12.73 16 16 N -0.64 -8.58 2.84 -166.79 -0.47 -9.05 16 17 C 0.10 1.00 6.45 -2.17 -0.01 0.99 16 18 C -0.11 -1.03 5.93 -24.91 -0.15 -1.18 16 19 C -0.07 -0.66 0.79 -152.01 -0.12 -0.78 16 20 C 0.10 0.77 5.88 37.16 0.22 0.99 16 21 O -0.57 -4.35 13.21 -35.23 -0.47 -4.81 16 22 C -0.10 -0.80 5.62 -24.94 -0.14 -0.94 16 23 C -0.13 -1.06 6.42 -25.08 -0.16 -1.23 16 24 C -0.13 -1.37 6.36 -25.49 -0.16 -1.53 16 25 C 0.16 1.88 3.40 -65.79 -0.22 1.65 16 26 H 0.09 1.14 7.77 -51.93 -0.40 0.74 16 27 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 28 H 0.06 1.23 4.30 -51.93 -0.22 1.00 16 29 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 32 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.39 6.01 4.58 -40.82 -0.19 5.82 16 37 H 0.07 0.68 6.06 -51.93 -0.31 0.37 16 38 H 0.08 0.76 6.81 -51.93 -0.35 0.40 16 39 H 0.08 0.67 7.48 -51.93 -0.39 0.28 16 40 H 0.07 0.73 7.95 -51.93 -0.41 0.31 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 1.33 9.12 45.56 0.42 1.74 16 44 H 0.07 0.52 7.98 -51.93 -0.41 0.10 16 45 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.59 6.08 -51.93 -0.32 0.27 16 48 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -32.74 358.05 -7.63 -40.37 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.33 Total: 6.27 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.42 Total: -3.60 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.03 Total: -48.19 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.38 Total: -17.55 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.87 Total: 17.29 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.74 -7.63 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.100 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds