Wall clock time and date at job start Fri Apr 10 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46971 * 2 1 4 4 C 1.50698 * 109.47486 * 240.00315 * 2 1 3 5 5 H 1.08001 * 119.99993 * 241.35266 * 4 2 1 6 6 C 1.37878 * 120.00088 * 61.33724 * 4 2 1 7 7 N 1.31513 * 120.00044 * 193.97576 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 13.98882 * 6 4 2 9 9 H 1.48505 * 109.47616 * 84.54140 * 8 6 4 10 10 H 1.48494 * 109.47182 * 204.54258 * 8 6 4 11 11 H 1.48502 * 109.47085 * 324.54326 * 8 6 4 12 12 C 1.52999 * 109.47199 * 120.00049 * 2 1 3 13 13 N 1.46502 * 109.47150 * 300.00220 * 12 2 1 14 14 C 1.34778 * 120.00124 * 180.02562 * 13 12 2 15 15 O 1.21587 * 119.99839 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99959 * 179.97438 * 14 13 12 17 17 C 1.48083 * 127.00857 * 359.97438 * 16 14 13 18 18 C 1.54905 * 103.23702 * 219.65239 * 17 16 14 19 19 C 1.54549 * 102.98226 * 322.53297 * 18 17 16 20 20 C 1.53008 * 111.95399 * 143.32147 * 19 18 17 21 21 O 1.42899 * 109.47052 * 62.50544 * 20 19 18 22 22 C 1.54341 * 109.45838 * 268.03188 * 19 18 17 23 23 C 1.55063 * 103.90904 * 87.59130 * 22 19 18 24 24 C 1.54067 * 102.56844 * 39.40699 * 23 22 19 25 25 C 1.47387 * 127.00487 * 179.97438 * 16 14 13 26 26 H 1.09003 * 111.76077 * 32.05715 * 25 16 14 27 27 H 1.08994 * 109.47322 * 309.36633 * 1 2 3 28 28 H 1.08994 * 109.47187 * 69.37031 * 1 2 3 29 29 H 1.09001 * 109.46847 * 189.36815 * 1 2 3 30 30 H 1.09001 * 109.47111 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47515 * 300.00039 * 3 2 1 32 32 H 1.08999 * 109.47007 * 60.00371 * 3 2 1 33 33 H 0.97005 * 119.99823 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47276 * 180.02562 * 12 2 1 35 35 H 1.08996 * 109.47518 * 60.00101 * 12 2 1 36 36 H 0.96997 * 119.99938 * 359.97438 * 13 12 2 37 37 H 1.08996 * 110.66587 * 101.21706 * 17 16 14 38 38 H 1.09004 * 110.66664 * 338.09038 * 17 16 14 39 39 H 1.08996 * 110.71458 * 204.15417 * 18 17 16 40 40 H 1.08998 * 110.85846 * 80.97862 * 18 17 16 41 41 H 1.09004 * 109.46910 * 182.50202 * 20 19 18 42 42 H 1.08997 * 109.47118 * 302.50715 * 20 19 18 43 43 H 0.96692 * 114.00152 * 179.97438 * 21 20 19 44 44 H 1.08997 * 110.54402 * 206.20098 * 22 19 18 45 45 H 1.09006 * 110.54032 * 328.98580 * 22 19 18 46 46 H 1.08995 * 110.90698 * 158.34109 * 23 22 19 47 47 H 1.09002 * 110.90269 * 281.90528 * 23 22 19 48 48 H 1.09005 * 111.45131 * 201.91525 * 24 23 22 49 49 H 1.09002 * 109.15714 * 79.48308 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6352 -1.6010 -1.1315 6 6 1.7223 -0.2233 -2.4825 7 7 1.9158 -0.9725 -3.5460 8 14 1.0275 1.5006 -2.6684 9 1 2.1416 2.4818 -2.7084 10 1 0.2470 1.5865 -3.9287 11 1 0.1417 1.8043 -1.5158 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5767 -1.4794 3.7811 16 7 1.4288 0.1448 4.7700 17 6 0.5746 1.3536 4.8150 18 6 1.1765 2.1697 5.9861 19 6 1.5631 1.0769 7.0082 20 6 2.8625 1.4142 7.7423 21 8 2.6870 2.6178 8.4925 22 6 0.3909 0.8497 7.9862 23 6 -0.4853 -0.2150 7.2768 24 6 0.5659 -1.1604 6.6644 25 6 1.6880 -0.2217 6.1739 26 1 2.6694 -0.6795 6.2974 27 1 -0.3633 0.6518 0.7944 28 1 -0.3633 0.3621 -0.9617 29 1 -0.3633 -1.0140 0.1673 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6980 -0.6297 -4.4269 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7489 1.2493 36 1 0.9942 0.7582 2.3564 37 1 -0.4607 1.0855 5.0252 38 1 0.6468 1.9107 3.8809 39 1 0.4324 2.8457 6.4074 40 1 2.0577 2.7228 5.6612 41 1 3.1200 0.5990 8.4185 42 1 3.6644 1.5519 7.0170 43 1 3.4726 2.8924 8.9849 44 1 0.7567 0.4700 8.9401 45 1 -0.1708 1.7726 8.1308 46 1 -1.1186 -0.7378 7.9935 47 1 -1.0858 0.2382 6.4881 48 1 0.1528 -1.7301 5.8320 49 1 0.9392 -1.8300 7.4392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889223841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:51 Heat of formation + Delta-G solvation = -88.147164 kcal Electronic energy + Delta-G solvation = -27522.254853 eV Core-core repulsion = 23869.690058 eV Total energy + Delta-G solvation = -3652.564795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01664 -40.25649 -38.38843 -37.31379 -35.39647 -34.70952 -33.32538 -32.56455 -29.99259 -28.77558 -28.03599 -27.30803 -26.66889 -25.33035 -23.87605 -22.06201 -20.97162 -20.89525 -19.88606 -19.01514 -18.18618 -18.04780 -17.55068 -17.13052 -16.65694 -16.26370 -15.94458 -15.69396 -15.43431 -15.04631 -14.78561 -14.59783 -14.47660 -14.27402 -14.00295 -13.92531 -13.76611 -13.55589 -13.23075 -12.96122 -12.77818 -12.42366 -12.37987 -12.17851 -12.13392 -11.96540 -11.89435 -11.79711 -11.78181 -11.43865 -11.36701 -11.15684 -11.06068 -10.81078 -10.62384 -10.40796 -10.18444 -9.47573 -8.30439 -6.32508 1.36574 1.37784 1.51151 1.57480 2.13455 2.34699 3.00335 3.05363 3.11529 3.51023 3.55806 3.85953 4.03252 4.06992 4.10395 4.30726 4.31729 4.31923 4.39147 4.41602 4.45061 4.56133 4.64379 4.68775 4.73146 4.73591 4.80912 4.84340 4.86932 4.92054 4.93179 5.03948 5.09324 5.13540 5.16043 5.17421 5.22439 5.36682 5.41191 5.43789 5.47665 5.53945 5.72068 5.78544 6.10354 6.30789 6.71531 6.92048 7.01689 7.32232 7.58021 8.86896 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025406 B = 0.003275 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.820588 B = 8548.364607 C = 8806.841232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.029 3.971 3 C -0.144 4.144 4 C -0.520 4.520 5 H 0.027 0.973 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.314 1.314 11 H -0.204 1.204 12 C 0.178 3.822 13 N -0.725 5.725 14 C 0.717 3.283 15 O -0.641 6.641 16 N -0.632 5.632 17 C 0.091 3.909 18 C -0.106 4.106 19 C -0.068 4.068 20 C 0.098 3.902 21 O -0.577 6.577 22 C -0.093 4.093 23 C -0.121 4.121 24 C -0.132 4.132 25 C 0.154 3.846 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.265 0.735 34 H 0.038 0.962 35 H 0.036 0.964 36 H 0.405 0.595 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.396 0.604 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 11.375 27.453 30.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 C -0.201 4.201 4 C -0.558 4.558 5 H 0.045 0.955 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.243 1.243 11 H -0.127 1.127 12 C 0.053 3.947 13 N -0.381 5.381 14 C 0.419 3.581 15 O -0.523 6.523 16 N -0.369 5.369 17 C -0.031 4.031 18 C -0.145 4.145 19 C -0.069 4.069 20 C 0.020 3.980 21 O -0.385 6.385 22 C -0.130 4.130 23 C -0.158 4.158 24 C -0.171 4.171 25 C 0.049 3.951 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.243 0.757 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.092 0.908 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.773 10.543 26.990 29.546 hybrid contribution 0.792 0.167 -0.990 1.279 sum -4.981 10.710 26.000 28.557 Atomic orbital electron populations 1.22189 0.95977 1.00531 1.00830 1.18645 0.93845 0.93118 0.91589 1.22268 1.00946 0.96742 1.00152 1.21018 1.33051 1.11147 0.90578 0.95487 1.25870 0.95331 1.01726 0.95111 1.70116 1.50653 1.38342 0.99431 0.86311 0.79442 0.79744 0.77021 1.20821 1.24336 1.12731 1.20889 0.96948 0.94548 0.82269 1.45126 1.56173 1.33241 1.03534 1.15615 0.79867 0.82112 0.80521 1.90869 1.45370 1.29728 1.86310 1.47854 1.53772 1.31180 1.04079 1.22873 0.95107 0.84763 1.00359 1.22668 1.01611 0.96308 0.93868 1.22047 0.96253 0.93497 0.95150 1.21956 0.94960 0.87256 0.93844 1.86398 1.42956 1.42569 1.66618 1.22358 0.94167 0.99430 0.97072 1.22489 0.96991 0.96479 0.99842 1.22571 0.96519 0.97885 1.00104 1.22072 0.98836 0.95204 0.78964 0.91297 0.91797 0.93436 0.94193 0.93554 0.94495 0.91097 0.92615 0.94360 0.94534 0.75706 0.89135 0.89774 0.87930 0.91503 0.92433 0.94341 0.75391 0.90781 0.89902 0.89983 0.91099 0.93203 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 7.53 71.98 0.54 -4.77 16 2 C 0.03 1.27 0.50 -52.93 -0.03 1.24 16 3 C -0.14 -5.48 7.52 71.98 0.54 -4.93 16 4 C -0.52 -29.16 8.62 25.60 0.22 -28.94 16 5 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 6 C 0.02 0.97 5.32 84.65 0.45 1.42 16 7 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 8 Si 0.95 42.77 22.79 68.60 1.56 44.33 16 9 H -0.28 -12.44 7.10 99.48 0.71 -11.73 16 10 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 11 H -0.20 -7.73 4.65 99.48 0.46 -7.27 16 12 C 0.18 7.49 4.49 86.38 0.39 7.88 16 13 N -0.72 -24.24 4.98 -478.53 -2.38 -26.62 16 14 C 0.72 25.22 8.54 179.05 1.53 26.75 16 15 O -0.64 -28.66 16.69 -3.99 -0.07 -28.73 16 16 N -0.63 -16.12 2.84 -799.88 -2.27 -18.40 16 17 C 0.09 1.56 6.45 86.73 0.56 2.12 16 18 C -0.11 -1.57 5.93 31.77 0.19 -1.38 16 19 C -0.07 -1.06 0.79 -50.56 -0.04 -1.10 16 20 C 0.10 1.37 5.88 71.98 0.42 1.79 16 21 O -0.58 -7.06 13.21 -148.98 -1.97 -9.03 16 22 C -0.09 -1.14 5.62 31.76 0.18 -0.96 16 23 C -0.12 -1.62 6.42 31.66 0.20 -1.42 16 24 C -0.13 -2.56 6.36 31.40 0.20 -2.36 16 25 C 0.15 3.36 3.40 45.90 0.16 3.51 16 26 H 0.07 1.78 7.77 -2.39 -0.02 1.76 16 27 H 0.06 1.91 7.13 -2.39 -0.02 1.89 16 28 H 0.05 1.91 4.30 -2.39 -0.01 1.90 16 29 H 0.04 1.58 8.12 -2.39 -0.02 1.56 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.44 2.25 -2.39 -0.01 1.44 16 32 H 0.07 2.08 6.86 -2.39 -0.02 2.06 16 33 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 11.00 4.58 -92.71 -0.42 10.57 16 37 H 0.09 1.31 6.06 -2.39 -0.01 1.30 16 38 H 0.08 1.32 6.81 -2.38 -0.02 1.30 16 39 H 0.10 1.17 7.48 -2.39 -0.02 1.15 16 40 H 0.07 1.10 7.95 -2.39 -0.02 1.09 16 41 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.40 1.65 9.12 -74.06 -0.68 0.98 16 44 H 0.07 0.85 7.98 -2.39 -0.02 0.84 16 45 H 0.08 0.90 7.52 -2.38 -0.02 0.89 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.94 6.08 -2.39 -0.01 0.93 16 48 H 0.05 1.23 8.06 -2.38 -0.02 1.21 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.56 358.05 0.31 -75.25 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.38 Total: 23.19 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 5.51 Total: -1.14 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.36 Total: -103.88 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.03 Total: -37.75 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.56 Total: 44.33 kcal Total: -75.56 0.31 -75.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889223841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.893 kcal (2) G-P(sol) polarization free energy of solvation -75.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds