Wall clock time and date at job start Fri Apr 10 2020 22:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47082 * 2 1 4 4 C 1.52996 * 109.46730 * 120.00052 * 2 1 3 5 5 H 1.08997 * 109.48453 * 300.02127 * 4 2 1 6 6 C 1.53097 * 109.47295 * 179.97438 * 4 2 1 7 7 C 1.53188 * 109.15742 * 182.39893 * 6 4 2 8 8 H 1.09002 * 109.53823 * 176.93647 * 7 6 4 9 9 C 1.50703 * 109.54233 * 297.11231 * 7 6 4 10 10 O 1.21281 * 119.99593 * 109.31885 * 9 7 6 11 11 N 1.34778 * 120.00053 * 289.31818 * 9 7 6 12 12 C 1.46959 * 120.59051 * 174.48320 * 11 9 7 13 13 C 1.53370 * 108.63892 * 235.25086 * 12 11 9 14 14 N 1.46970 * 108.62962 * 310.57948 * 13 12 11 15 15 C 1.36942 * 120.59047 * 235.19950 * 14 13 12 16 16 H 1.07998 * 119.99616 * 25.95819 * 15 14 13 17 17 C 1.38807 * 119.99845 * 205.95539 * 15 14 13 18 18 N 1.31618 * 120.00093 * 210.93281 * 17 15 14 19 19 Si 1.86801 * 119.99923 * 30.93096 * 17 15 14 20 20 H 1.48494 * 109.47291 * 265.89982 * 19 17 15 21 21 H 1.48503 * 109.47147 * 145.90173 * 19 17 15 22 22 H 1.48502 * 109.47124 * 25.90583 * 19 17 15 23 23 C 1.46964 * 118.81102 * 55.47767 * 14 13 12 24 24 C 1.46960 * 120.59541 * 354.51110 * 11 9 7 25 25 C 1.53174 * 109.03701 * 56.98150 * 7 6 4 26 26 C 1.53091 * 109.16624 * 303.01859 * 25 7 6 27 27 O 1.42901 * 109.41079 * 57.60712 * 26 25 7 28 28 H 1.08997 * 109.47280 * 300.00050 * 1 2 3 29 29 H 1.09004 * 109.47419 * 59.99854 * 1 2 3 30 30 H 1.09002 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46708 * 240.00399 * 2 1 3 32 32 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47502 * 300.00518 * 3 2 1 34 34 H 1.09005 * 109.47234 * 60.00135 * 3 2 1 35 35 H 1.09000 * 109.52271 * 62.49909 * 6 4 2 36 36 H 1.08999 * 109.58079 * 302.33186 * 6 4 2 37 37 H 1.09007 * 109.60916 * 115.50396 * 12 11 9 38 38 H 1.09008 * 109.75670 * 355.08024 * 12 11 9 39 39 H 1.08997 * 109.61166 * 190.83748 * 13 12 11 40 40 H 1.08999 * 109.74861 * 70.40153 * 13 12 11 41 41 H 0.96998 * 120.00027 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.61226 * 64.26845 * 23 14 13 43 43 H 1.09008 * 109.60408 * 184.77496 * 23 14 13 44 44 H 1.09005 * 109.60969 * 244.49308 * 24 11 9 45 45 H 1.09004 * 109.60917 * 4.83203 * 24 11 9 46 46 H 1.08999 * 109.52158 * 62.92713 * 25 7 6 47 47 H 1.09000 * 109.52529 * 183.10933 * 25 7 6 48 48 H 1.08996 * 109.47960 * 297.63012 * 26 25 7 49 49 H 1.08996 * 109.49172 * 177.59539 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6764 -0.2078 2.1393 6 6 3.5709 -0.7219 1.2490 7 6 4.0734 -1.4973 2.4709 8 1 5.1620 -1.5482 2.4479 9 6 3.6279 -0.7985 3.7296 10 8 2.7724 -1.2974 4.4297 11 7 4.1801 0.3808 4.0772 12 6 3.6730 1.1320 5.2340 13 6 3.2946 2.5451 4.7732 14 7 4.4144 3.1029 4.0019 15 6 4.9748 4.3016 4.3546 16 1 4.9199 4.6431 5.3777 17 6 5.6135 5.0776 3.3972 18 7 6.6245 5.8470 3.7410 19 14 5.0380 5.0299 1.6206 20 1 5.8422 4.0352 0.8664 21 1 5.2098 6.3719 1.0084 22 1 3.6045 4.6448 1.5748 23 6 4.9178 2.3544 2.8417 24 6 5.2998 0.9387 3.3059 25 6 3.4915 -2.9138 2.4377 26 6 1.9636 -2.8285 2.3919 27 8 1.5644 -2.0689 1.2492 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9356 0.3043 1.2936 36 1 3.9359 -1.1990 0.3395 37 1 4.4470 1.1917 5.9993 38 1 2.7939 0.6324 5.6412 39 1 3.1001 3.1734 5.6423 40 1 2.4041 2.5019 4.1462 41 1 7.0705 6.3896 3.0720 42 1 4.1409 2.2952 2.0794 43 1 5.7954 2.8570 2.4349 44 1 6.1896 0.9847 3.9339 45 1 5.4964 0.3086 2.4385 46 1 3.8539 -3.4358 1.5522 47 1 3.7994 -3.4552 3.3323 48 1 1.5994 -2.3423 3.2969 49 1 1.5452 -3.8327 2.3251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933236214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:54 Heat of formation + Delta-G solvation = -59.379436 kcal Electronic energy + Delta-G solvation = -28884.207252 eV Core-core repulsion = 25232.889919 eV Total energy + Delta-G solvation = -3651.317333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87065 -38.69427 -37.12655 -35.31030 -34.20872 -33.65414 -31.61505 -30.73651 -30.02194 -27.59538 -27.05720 -25.40875 -23.74589 -23.61374 -23.27866 -21.78276 -20.26976 -20.14948 -18.50065 -17.15990 -16.55530 -16.33843 -16.15206 -15.52225 -15.31448 -14.86127 -14.52080 -14.31710 -14.26261 -13.88329 -13.79401 -13.65516 -13.32276 -12.93278 -12.84217 -12.62719 -12.35476 -12.20884 -12.19288 -11.97158 -11.85313 -11.55926 -11.28988 -11.20051 -11.03156 -10.89443 -10.87011 -10.56306 -10.50930 -10.42099 -10.27186 -10.16822 -9.66817 -9.58590 -9.04541 -8.85892 -8.32562 -7.10154 -6.12078 -3.38432 2.75979 3.20444 3.23754 3.41579 3.45282 3.78121 4.42345 4.47069 4.51125 4.71879 4.75777 4.82825 4.95730 5.05583 5.12814 5.19321 5.26403 5.32368 5.42294 5.50701 5.53038 5.61887 5.63074 5.67005 5.72352 5.75379 5.77863 5.82477 5.85122 5.89102 5.94879 5.98078 5.99915 6.02903 6.12946 6.17199 6.21552 6.32444 6.34861 6.39742 6.44833 6.64099 6.85043 7.32626 7.68604 7.79431 8.18597 8.36565 8.79682 9.58730 9.95935 11.03038 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.005600 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.457370 B = 4998.890654 C = 5998.583207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.152 4.152 4 C 0.098 3.902 5 H 0.058 0.942 6 C -0.147 4.147 7 C -0.112 4.112 8 H 0.097 0.903 9 C 0.516 3.484 10 O -0.551 6.551 11 N -0.596 5.596 12 C 0.095 3.905 13 C 0.134 3.866 14 N -0.600 5.600 15 C -0.269 4.269 16 H 0.086 0.914 17 C 0.033 3.967 18 N -0.889 5.889 19 Si 0.857 3.143 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.271 1.271 23 C 0.120 3.880 24 C 0.084 3.916 25 C -0.130 4.130 26 C 0.047 3.953 27 O -0.381 6.381 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.026 0.974 41 H 0.264 0.736 42 H 0.028 0.972 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -14.903 -6.075 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.209 4.209 4 C 0.040 3.960 5 H 0.076 0.924 6 C -0.185 4.185 7 C -0.134 4.134 8 H 0.115 0.885 9 C 0.304 3.696 10 O -0.431 6.431 11 N -0.327 5.327 12 C -0.029 4.029 13 C 0.007 3.993 14 N -0.323 5.323 15 C -0.396 4.396 16 H 0.104 0.896 17 C -0.168 4.168 18 N -0.530 5.530 19 Si 0.685 3.315 20 H -0.214 1.214 21 H -0.226 1.226 22 H -0.196 1.196 23 C -0.006 4.006 24 C -0.040 4.040 25 C -0.169 4.169 26 C -0.030 4.030 27 O -0.300 6.300 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.693 -15.050 -5.855 17.481 hybrid contribution 0.206 0.315 -0.884 0.961 sum -6.487 -14.735 -6.739 17.453 Atomic orbital electron populations 1.21751 0.94643 1.02173 1.01393 1.21078 0.96583 0.95663 0.97047 1.21919 1.01468 0.95022 1.02480 1.22070 0.92047 0.83495 0.98363 0.92402 1.22385 0.97314 1.01650 0.97147 1.21392 1.02043 0.96354 0.93570 0.88515 1.20537 0.81727 0.80818 0.86527 1.90554 1.33189 1.65285 1.54057 1.48024 1.34244 1.20027 1.30428 1.22209 0.99724 0.93449 0.87484 1.21335 0.89926 0.91873 0.96163 1.44304 1.35277 1.21021 1.31724 1.18853 1.30863 0.95001 0.94887 0.89632 1.25213 0.97120 0.97072 0.97376 1.69986 1.18561 1.29779 1.34646 0.87249 0.80361 0.76426 0.87441 1.21388 1.22596 1.19552 1.21723 0.98549 0.90199 0.90164 1.22605 0.88969 0.96847 0.95617 1.21949 0.97586 0.94683 1.02634 1.22907 0.93470 0.96234 0.90361 1.87837 1.74786 1.23087 1.44268 0.92884 0.92898 0.91933 0.90623 0.92190 0.92084 0.92203 0.89511 0.90006 0.91477 0.89741 0.90638 0.95622 0.92639 0.95422 0.89783 0.90704 0.90490 0.90883 0.90593 0.89651 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.05 37.16 0.34 -1.31 16 2 C -0.09 -1.03 2.72 -90.62 -0.25 -1.28 16 3 C -0.15 -1.93 8.84 37.16 0.33 -1.60 16 4 C 0.10 1.32 2.00 -26.68 -0.05 1.27 16 5 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 6 C -0.15 -1.82 4.12 -26.58 -0.11 -1.93 16 7 C -0.11 -1.41 2.17 -91.58 -0.20 -1.61 16 8 H 0.10 1.06 7.08 -51.93 -0.37 0.70 16 9 C 0.52 8.05 5.73 -10.98 -0.06 7.98 16 10 O -0.55 -9.76 13.00 5.56 0.07 -9.69 16 11 N -0.60 -9.70 2.95 -172.22 -0.51 -10.21 16 12 C 0.10 1.61 6.57 -3.60 -0.02 1.58 16 13 C 0.13 2.53 6.67 -3.59 -0.02 2.50 16 14 N -0.60 -13.30 2.73 -171.77 -0.47 -13.76 16 15 C -0.27 -7.06 9.93 -15.06 -0.15 -7.21 16 16 H 0.09 2.41 8.05 -52.49 -0.42 1.99 16 17 C 0.03 0.89 5.00 -17.43 -0.09 0.80 16 18 N -0.89 -25.83 13.97 55.49 0.78 -25.06 16 19 Si 0.86 20.68 24.93 -169.99 -4.24 16.44 16 20 H -0.29 -6.53 6.68 56.52 0.38 -6.16 16 21 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.12 2.38 4.41 -3.37 -0.01 2.36 16 24 C 0.08 1.35 5.70 -3.37 -0.02 1.33 16 25 C -0.13 -1.51 5.32 -26.59 -0.14 -1.66 16 26 C 0.05 0.60 6.56 37.20 0.24 0.84 16 27 O -0.38 -5.27 9.73 -35.23 -0.34 -5.62 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.77 6.49 -51.93 -0.34 0.43 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.14 3.86 -51.93 -0.20 0.94 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.08 1.39 7.03 -51.92 -0.37 1.03 16 39 H 0.08 1.39 7.92 -51.93 -0.41 0.98 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.54 6.84 -51.93 -0.36 0.19 16 43 H 0.08 1.82 4.88 -51.92 -0.25 1.56 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.08 1.01 4.75 -51.93 -0.25 0.76 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.09 1.30 5.45 -51.93 -0.28 1.02 16 49 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -29.71 356.42 -7.82 -37.53 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.26 Total: 2.92 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.22 Total: 2.08 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.20 Total: -49.03 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.27 Total: -15.31 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.24 Total: 16.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.71 -7.82 -37.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.854 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds