Wall clock time and date at job start Fri Apr 10 2020 22:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47082 * 2 1 4 4 C 1.52996 * 109.46730 * 120.00052 * 2 1 3 5 5 H 1.08997 * 109.48453 * 300.02127 * 4 2 1 6 6 C 1.53097 * 109.47295 * 179.97438 * 4 2 1 7 7 C 1.53188 * 109.15742 * 182.39893 * 6 4 2 8 8 H 1.09002 * 109.53823 * 176.93647 * 7 6 4 9 9 C 1.50703 * 109.54233 * 297.11231 * 7 6 4 10 10 O 1.21281 * 119.99593 * 109.31885 * 9 7 6 11 11 N 1.34778 * 120.00053 * 289.31818 * 9 7 6 12 12 C 1.46959 * 120.59051 * 174.48320 * 11 9 7 13 13 C 1.53370 * 108.63892 * 235.25086 * 12 11 9 14 14 N 1.46970 * 108.62962 * 310.57948 * 13 12 11 15 15 C 1.36942 * 120.59047 * 235.19950 * 14 13 12 16 16 H 1.07998 * 119.99616 * 25.95819 * 15 14 13 17 17 C 1.38807 * 119.99845 * 205.95539 * 15 14 13 18 18 N 1.31618 * 120.00093 * 210.93281 * 17 15 14 19 19 Si 1.86801 * 119.99923 * 30.93096 * 17 15 14 20 20 H 1.48494 * 109.47291 * 265.89982 * 19 17 15 21 21 H 1.48503 * 109.47147 * 145.90173 * 19 17 15 22 22 H 1.48502 * 109.47124 * 25.90583 * 19 17 15 23 23 C 1.46964 * 118.81102 * 55.47767 * 14 13 12 24 24 C 1.46960 * 120.59541 * 354.51110 * 11 9 7 25 25 C 1.53174 * 109.03701 * 56.98150 * 7 6 4 26 26 C 1.53091 * 109.16624 * 303.01859 * 25 7 6 27 27 O 1.42901 * 109.41079 * 57.60712 * 26 25 7 28 28 H 1.08997 * 109.47280 * 300.00050 * 1 2 3 29 29 H 1.09004 * 109.47419 * 59.99854 * 1 2 3 30 30 H 1.09002 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46708 * 240.00399 * 2 1 3 32 32 H 1.08994 * 109.47246 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47502 * 300.00518 * 3 2 1 34 34 H 1.09005 * 109.47234 * 60.00135 * 3 2 1 35 35 H 1.09000 * 109.52271 * 62.49909 * 6 4 2 36 36 H 1.08999 * 109.58079 * 302.33186 * 6 4 2 37 37 H 1.09007 * 109.60916 * 115.50396 * 12 11 9 38 38 H 1.09008 * 109.75670 * 355.08024 * 12 11 9 39 39 H 1.08997 * 109.61166 * 190.83748 * 13 12 11 40 40 H 1.08999 * 109.74861 * 70.40153 * 13 12 11 41 41 H 0.96998 * 120.00027 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.61226 * 64.26845 * 23 14 13 43 43 H 1.09008 * 109.60408 * 184.77496 * 23 14 13 44 44 H 1.09005 * 109.60969 * 244.49308 * 24 11 9 45 45 H 1.09004 * 109.60917 * 4.83203 * 24 11 9 46 46 H 1.08999 * 109.52158 * 62.92713 * 25 7 6 47 47 H 1.09000 * 109.52529 * 183.10933 * 25 7 6 48 48 H 1.08996 * 109.47960 * 297.63012 * 26 25 7 49 49 H 1.08996 * 109.49172 * 177.59539 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 1.6764 -0.2078 2.1393 6 6 3.5709 -0.7219 1.2490 7 6 4.0734 -1.4973 2.4709 8 1 5.1620 -1.5482 2.4479 9 6 3.6279 -0.7985 3.7296 10 8 2.7724 -1.2974 4.4297 11 7 4.1801 0.3808 4.0772 12 6 3.6730 1.1320 5.2340 13 6 3.2946 2.5451 4.7732 14 7 4.4144 3.1029 4.0019 15 6 4.9748 4.3016 4.3546 16 1 4.9199 4.6431 5.3777 17 6 5.6135 5.0776 3.3972 18 7 6.6245 5.8470 3.7410 19 14 5.0380 5.0299 1.6206 20 1 5.8422 4.0352 0.8664 21 1 5.2098 6.3719 1.0084 22 1 3.6045 4.6448 1.5748 23 6 4.9178 2.3544 2.8417 24 6 5.2998 0.9387 3.3059 25 6 3.4915 -2.9138 2.4377 26 6 1.9636 -2.8285 2.3919 27 8 1.5644 -2.0689 1.2492 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.9356 0.3043 1.2936 36 1 3.9359 -1.1990 0.3395 37 1 4.4470 1.1917 5.9993 38 1 2.7939 0.6324 5.6412 39 1 3.1001 3.1734 5.6423 40 1 2.4041 2.5019 4.1462 41 1 7.0705 6.3896 3.0720 42 1 4.1409 2.2952 2.0794 43 1 5.7954 2.8570 2.4349 44 1 6.1896 0.9847 3.9339 45 1 5.4964 0.3086 2.4385 46 1 3.8539 -3.4358 1.5522 47 1 3.7994 -3.4552 3.3323 48 1 1.5994 -2.3423 3.2969 49 1 1.5452 -3.8327 2.3251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933236214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:54 Heat of formation + Delta-G solvation = -77.626611 kcal Electronic energy + Delta-G solvation = -28884.998509 eV Core-core repulsion = 25232.889919 eV Total energy + Delta-G solvation = -3652.108590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01823 -39.89632 -38.56800 -36.31809 -35.70596 -34.85198 -33.47490 -32.19959 -31.01207 -29.09320 -28.12523 -26.61096 -25.20951 -24.85696 -24.61377 -23.11653 -21.55512 -21.20929 -19.94685 -18.57532 -18.03354 -17.43662 -17.31102 -16.94372 -16.65755 -16.35946 -16.01253 -15.52391 -15.47676 -15.24917 -14.97258 -14.73387 -14.65873 -14.36927 -14.10075 -14.06463 -13.76726 -13.57419 -13.24346 -13.19208 -12.98107 -12.75524 -12.53299 -12.50449 -12.39566 -12.18855 -12.08540 -12.00557 -11.86205 -11.81093 -11.61865 -11.48566 -11.30677 -10.74882 -10.66616 -10.15631 -9.87656 -8.90777 -8.21299 -5.44174 1.29265 1.44423 1.52337 1.55253 1.96116 2.41251 2.79439 2.96956 3.30407 3.38013 3.54000 3.74700 3.83773 3.97457 4.04562 4.06191 4.11785 4.21980 4.27263 4.30126 4.32556 4.33662 4.51666 4.58961 4.59609 4.65553 4.69955 4.70469 4.75820 4.79418 4.81494 4.87542 4.89480 4.94423 4.98773 5.04021 5.07635 5.14841 5.18574 5.21484 5.36921 5.40185 5.48495 5.82522 6.09495 6.31501 6.43505 6.86422 7.12697 7.58644 7.99336 8.97736 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.005600 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.457370 B = 4998.890654 C = 5998.583207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.151 4.151 4 C 0.099 3.901 5 H 0.025 0.975 6 C -0.144 4.144 7 C -0.111 4.111 8 H 0.123 0.877 9 C 0.514 3.486 10 O -0.574 6.574 11 N -0.601 5.601 12 C 0.105 3.895 13 C 0.135 3.865 14 N -0.612 5.612 15 C -0.259 4.259 16 H 0.053 0.947 17 C -0.018 4.018 18 N -0.937 5.937 19 Si 0.918 3.082 20 H -0.260 1.260 21 H -0.310 1.310 22 H -0.270 1.270 23 C 0.116 3.884 24 C 0.095 3.905 25 C -0.125 4.125 26 C 0.043 3.957 27 O -0.386 6.386 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.026 0.974 41 H 0.263 0.737 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.115 0.885 46 H 0.098 0.902 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 -17.376 -8.503 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.208 4.208 4 C 0.041 3.959 5 H 0.043 0.957 6 C -0.181 4.181 7 C -0.132 4.132 8 H 0.141 0.859 9 C 0.304 3.696 10 O -0.455 6.455 11 N -0.333 5.333 12 C -0.019 4.019 13 C 0.009 3.991 14 N -0.337 5.337 15 C -0.388 4.388 16 H 0.071 0.929 17 C -0.215 4.215 18 N -0.581 5.581 19 Si 0.746 3.254 20 H -0.186 1.186 21 H -0.238 1.238 22 H -0.195 1.195 23 C -0.010 4.010 24 C -0.029 4.029 25 C -0.163 4.163 26 C -0.033 4.033 27 O -0.306 6.306 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.586 -17.575 -8.296 20.521 hybrid contribution 0.066 1.049 -0.016 1.051 sum -6.520 -16.527 -8.312 19.614 Atomic orbital electron populations 1.21734 0.94538 1.02006 1.01505 1.21076 0.96714 0.95246 0.96980 1.21915 1.01525 0.95318 1.02025 1.22037 0.93052 0.83236 0.97610 0.95680 1.22385 0.96203 1.01526 0.98032 1.21508 1.03592 0.96481 0.91601 0.85920 1.21173 0.80940 0.80312 0.87203 1.90562 1.34039 1.65777 1.55084 1.48084 1.34523 1.20429 1.30219 1.21971 0.99871 0.92178 0.87906 1.21381 0.89019 0.92993 0.95698 1.44387 1.36315 1.20197 1.32757 1.18767 1.29949 0.96496 0.93595 0.92946 1.25716 0.97206 0.97353 1.01175 1.70085 1.20240 1.31771 1.36010 0.86248 0.79938 0.76300 0.82935 1.18608 1.23819 1.19479 1.21791 0.97925 0.91848 0.89433 1.22476 0.88455 0.95115 0.96824 1.21947 0.96253 0.94201 1.03923 1.22936 0.94801 0.96611 0.88934 1.87832 1.75229 1.23119 1.44376 0.94227 0.91355 0.92209 0.89027 0.92022 0.90738 0.94448 0.90135 0.87439 0.91668 0.89365 0.90960 0.95589 0.92767 0.94601 0.91442 0.91017 0.86722 0.88376 0.90393 0.92522 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.05 71.98 0.65 -2.37 16 2 C -0.08 -1.79 2.72 -10.80 -0.03 -1.81 16 3 C -0.15 -3.49 8.84 71.98 0.64 -2.85 16 4 C 0.10 2.45 2.00 30.63 0.06 2.51 16 5 H 0.03 0.79 7.38 -2.39 -0.02 0.77 16 6 C -0.14 -3.03 4.12 30.69 0.13 -2.90 16 7 C -0.11 -2.38 2.17 -11.42 -0.02 -2.41 16 8 H 0.12 2.06 7.08 -2.39 -0.02 2.04 16 9 C 0.51 14.99 5.73 87.66 0.50 15.49 16 10 O -0.57 -19.76 13.00 -3.03 -0.04 -19.80 16 11 N -0.60 -18.54 2.95 -817.16 -2.41 -20.95 16 12 C 0.10 3.50 6.57 86.42 0.57 4.06 16 13 C 0.13 5.13 6.67 86.41 0.58 5.71 16 14 N -0.61 -27.07 2.73 -697.35 -1.90 -28.97 16 15 C -0.26 -13.92 9.93 84.03 0.83 -13.08 16 16 H 0.05 3.10 8.05 -2.91 -0.02 3.07 16 17 C -0.02 -0.98 5.00 84.86 0.42 -0.55 16 18 N -0.94 -55.79 13.97 21.65 0.30 -55.49 16 19 Si 0.92 42.74 24.93 68.60 1.71 44.45 16 20 H -0.26 -10.93 6.68 99.48 0.66 -10.26 16 21 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 23 C 0.12 4.37 4.41 86.56 0.38 4.75 16 24 C 0.10 2.82 5.70 86.56 0.49 3.31 16 25 C -0.13 -2.46 5.32 30.68 0.16 -2.29 16 26 C 0.04 1.02 6.56 72.01 0.47 1.49 16 27 O -0.39 -9.80 9.73 -148.98 -1.45 -11.26 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.39 6.49 -2.39 -0.02 1.38 16 33 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.08 1.82 3.86 -2.39 -0.01 1.81 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.09 2.89 7.03 -2.38 -0.02 2.87 16 39 H 0.07 2.74 7.92 -2.39 -0.02 2.72 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.04 1.31 6.84 -2.39 -0.02 1.30 16 43 H 0.07 2.79 4.88 -2.38 -0.01 2.78 16 44 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.11 2.53 4.75 -2.39 -0.01 2.52 16 46 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.06 1.69 5.45 -2.39 -0.01 1.67 16 49 H 0.10 2.01 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.34 356.42 2.94 -62.40 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.89 Total: 20.55 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.84 Total: 9.06 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.01 Total: -105.41 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -1.49 Total: -31.06 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.71 Total: 44.45 kcal Total: -65.34 2.94 -62.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933236214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.222 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds