Wall clock time and date at job start Fri Apr 10 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46932 * 2 1 4 4 H 1.09000 * 109.47217 * 177.19091 * 3 2 1 5 5 O 1.42900 * 109.47401 * 57.18535 * 3 2 1 6 6 C 1.42904 * 114.00223 * 153.90216 * 5 3 2 7 7 C 1.54262 * 110.03112 * 271.91614 * 6 5 3 8 8 C 1.54964 * 104.16044 * 217.13356 * 7 6 5 9 9 C 1.54890 * 102.77690 * 37.88746 * 8 7 6 10 10 C 1.53868 * 110.03178 * 154.69496 * 6 5 3 11 11 C 1.50702 * 109.46920 * 297.18478 * 3 2 1 12 12 O 1.21290 * 119.99830 * 114.50693 * 11 3 2 13 13 N 1.34775 * 120.00528 * 294.51024 * 11 3 2 14 14 C 1.47747 * 125.81807 * 355.61941 * 13 11 3 15 15 C 1.54905 * 104.84102 * 155.83237 * 14 13 11 16 16 C 1.55155 * 101.58112 * 37.09510 * 15 14 13 17 17 H 1.08998 * 110.87365 * 82.93397 * 16 15 14 18 18 N 1.46503 * 110.71916 * 206.13659 * 16 15 14 19 19 C 1.36933 * 119.99980 * 268.51863 * 18 16 15 20 20 H 1.07998 * 120.00264 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00157 * 180.02562 * 19 18 16 22 22 N 1.31618 * 120.00013 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47099 * 89.99796 * 23 21 19 25 25 H 1.48499 * 109.47412 * 210.00226 * 23 21 19 26 26 H 1.48507 * 109.46943 * 329.99996 * 23 21 19 27 27 C 1.47017 * 125.64934 * 175.71855 * 13 11 3 28 28 H 1.08999 * 109.47247 * 305.13500 * 1 2 3 29 29 H 1.08994 * 109.46941 * 65.14059 * 1 2 3 30 30 H 1.09003 * 109.46695 * 185.13489 * 1 2 3 31 31 H 1.08997 * 109.47698 * 239.99662 * 2 1 3 32 32 H 1.09001 * 109.47138 * 119.99177 * 2 1 3 33 33 H 1.09002 * 110.01428 * 33.30209 * 6 5 3 34 34 H 1.09005 * 110.48646 * 335.77920 * 7 6 5 35 35 H 1.09003 * 110.48916 * 98.42157 * 7 6 5 36 36 H 1.09001 * 110.72071 * 279.57416 * 8 7 6 37 37 H 1.09006 * 110.92518 * 156.29260 * 8 7 6 38 38 H 1.08993 * 110.48646 * 203.40631 * 9 8 7 39 39 H 1.09004 * 110.48785 * 80.76152 * 9 8 7 40 40 H 1.09000 * 110.03256 * 238.56808 * 10 6 5 41 41 H 1.08992 * 110.03590 * 0.02562 * 10 6 5 42 42 H 1.09004 * 110.28800 * 37.02758 * 14 13 11 43 43 H 1.08999 * 110.43719 * 274.71105 * 14 13 11 44 44 H 1.09005 * 111.00741 * 279.02387 * 15 14 13 45 45 H 1.09001 * 111.04003 * 155.18442 * 15 14 13 46 46 H 0.97003 * 120.00457 * 88.52602 * 18 16 15 47 47 H 0.97000 * 119.99794 * 180.02562 * 22 21 19 48 48 H 1.08997 * 109.88430 * 61.60888 * 27 13 11 49 49 H 1.08997 * 109.88066 * 300.58836 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1288 1.4430 0.0504 5 8 1.5104 2.1350 1.1323 6 6 2.3181 3.2273 1.5756 7 6 3.3706 2.7296 2.5877 8 6 3.4711 3.8765 3.6250 9 6 2.0028 4.3531 3.7521 10 6 1.4489 4.2594 2.3152 11 6 1.5953 2.1324 -1.2639 12 8 0.8143 3.0586 -1.2066 13 7 2.0655 1.7203 -2.4579 14 6 3.0846 0.6720 -2.6707 15 6 2.8240 0.1508 -4.1060 16 6 2.4299 1.4570 -4.8449 17 1 3.3163 2.0087 -5.1579 18 7 1.5717 1.1630 -5.9952 19 6 2.1280 0.9548 -7.2290 20 1 3.1995 1.0068 -7.3540 21 6 1.3148 0.6767 -8.3191 22 7 0.0090 0.6138 -8.1670 23 14 2.0738 0.3919 -10.0021 24 1 2.3731 -1.0526 -10.1720 25 1 1.1213 0.8273 -11.0548 26 1 3.3305 1.1747 -10.1172 27 6 1.6503 2.2414 -3.7684 28 1 -0.3634 0.5914 0.8404 29 1 -0.3633 0.4320 -0.9324 30 1 -0.3633 -1.0236 0.0920 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.8114 3.6962 0.7241 34 1 3.0340 1.8103 3.0670 35 1 4.3304 2.5747 2.0948 36 1 4.1069 4.6794 3.2518 37 1 3.8409 3.5055 4.5809 38 1 1.9654 5.3822 4.1090 39 1 1.4449 3.6963 4.4195 40 1 1.5211 5.2294 1.8233 41 1 0.4112 3.9269 2.3365 42 1 2.9567 -0.1322 -1.9461 43 1 4.0866 1.0946 -2.5967 44 1 2.0041 -0.5674 -4.1181 45 1 3.7272 -0.2833 -4.5348 46 1 0.6093 1.1160 -5.8830 47 1 -0.5592 0.4192 -8.9287 48 1 1.8887 3.3027 -3.8378 49 1 0.5792 2.0924 -3.9042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970150310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:05 Heat of formation + Delta-G solvation = -78.469497 kcal Electronic energy + Delta-G solvation = -26818.315696 eV Core-core repulsion = 23166.170555 eV Total energy + Delta-G solvation = -3652.145140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36364 -38.86340 -37.31826 -36.10568 -34.27316 -33.32556 -31.43039 -29.56932 -28.98012 -28.38178 -27.86394 -26.38743 -23.86248 -23.10738 -21.73545 -21.03652 -20.57759 -20.07620 -19.24609 -17.48631 -17.03599 -16.97001 -16.24760 -15.96549 -15.12712 -14.92678 -14.79939 -14.43012 -14.16584 -13.58820 -13.48415 -13.45697 -13.33889 -13.27598 -12.63943 -12.55897 -12.34798 -11.97070 -11.88781 -11.80989 -11.53496 -11.38138 -11.33677 -11.25519 -11.08557 -10.93929 -10.89070 -10.82964 -10.73865 -10.64017 -10.34704 -10.22312 -10.11076 -9.78543 -9.14747 -8.99122 -8.39601 -7.07347 -5.84431 -3.15275 2.73477 3.03243 3.39096 3.44322 3.46357 3.55429 4.32203 4.34912 4.50754 4.52423 4.65832 4.70853 4.79162 4.97144 5.05739 5.11370 5.22210 5.25810 5.28065 5.32395 5.37672 5.43926 5.45858 5.47755 5.54081 5.59525 5.65589 5.69665 5.78562 5.79475 5.87465 5.90546 5.96990 6.02517 6.05643 6.07896 6.11722 6.24642 6.33688 6.34967 6.54645 6.58397 6.86683 7.05434 7.62543 7.72334 8.31967 8.34472 9.44289 9.98524 10.33145 11.37704 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029230 B = 0.002660 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.676355 B =10523.246789 C =10639.485577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.080 0.920 5 O -0.345 6.345 6 C 0.085 3.915 7 C -0.150 4.150 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.118 4.118 11 C 0.503 3.497 12 O -0.530 6.530 13 N -0.612 5.612 14 C 0.088 3.912 15 C -0.154 4.154 16 C 0.173 3.827 17 H 0.066 0.934 18 N -0.715 5.715 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.930 5.930 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.099 3.901 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.063 0.937 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.084 1.368 23.451 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C 0.018 3.982 4 H 0.098 0.902 5 O -0.262 6.262 6 C 0.027 3.973 7 C -0.188 4.188 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.156 4.156 11 C 0.290 3.710 12 O -0.406 6.406 13 N -0.348 5.348 14 C -0.034 4.034 15 C -0.196 4.196 16 C 0.061 3.939 17 H 0.084 0.916 18 N -0.355 5.355 19 C -0.377 4.377 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.024 4.024 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.221 0.779 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.524 1.860 23.473 24.720 hybrid contribution 0.359 -0.174 -1.184 1.249 sum 7.883 1.686 22.289 23.702 Atomic orbital electron populations 1.21673 0.94381 1.01656 1.02940 1.21740 0.98192 0.92274 1.03432 1.21991 0.98189 0.93134 0.84887 0.90233 1.88043 1.48704 1.45299 1.44179 1.22827 0.91272 0.87331 0.95836 1.22973 0.98858 0.99506 0.97425 1.22435 0.96957 0.97823 0.98842 1.22355 0.95823 1.01189 0.96712 1.22135 1.00668 0.97956 0.94825 1.20981 0.81636 0.84098 0.84298 1.90704 1.34753 1.28821 1.86356 1.48604 1.41414 1.39009 1.05770 1.22685 0.91253 0.90208 0.99299 1.23562 1.02473 1.00959 0.92580 1.21177 0.93685 0.92183 0.86891 0.91579 1.42371 1.05563 1.83968 1.03623 1.19216 0.92009 1.41082 0.85372 0.90958 1.24782 0.95380 1.02319 0.98178 1.69666 1.02398 1.55202 1.30428 0.86169 0.77968 0.77856 0.84024 1.21628 1.21716 1.20684 1.22334 1.00353 0.98181 0.81521 0.91534 0.92647 0.92549 0.89497 0.90375 0.92083 0.90366 0.91631 0.91455 0.91388 0.91533 0.91412 0.91003 0.90154 0.90721 0.91629 0.90578 0.90499 0.77931 0.93325 0.91837 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.51 37.16 0.35 -1.47 16 2 C -0.12 -1.26 5.72 -26.73 -0.15 -1.41 16 3 C 0.08 0.97 2.04 -27.88 -0.06 0.91 16 4 H 0.08 0.80 7.78 -51.93 -0.40 0.40 16 5 O -0.34 -4.49 8.23 -55.08 -0.45 -4.94 16 6 C 0.09 0.95 3.08 -25.62 -0.08 0.87 16 7 C -0.15 -1.28 6.47 -25.03 -0.16 -1.44 16 8 C -0.12 -0.90 6.91 -24.70 -0.17 -1.08 16 9 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 10 C -0.12 -1.23 6.61 -25.61 -0.17 -1.40 16 11 C 0.50 8.00 5.95 -10.98 -0.07 7.93 16 12 O -0.53 -10.50 16.78 -14.30 -0.24 -10.74 16 13 N -0.61 -9.41 3.33 -170.26 -0.57 -9.98 16 14 C 0.09 1.10 6.55 -2.35 -0.02 1.09 16 15 C -0.15 -2.41 6.77 -24.59 -0.17 -2.57 16 16 C 0.17 3.25 3.61 -66.09 -0.24 3.01 16 17 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 18 N -0.71 -17.29 5.22 -51.65 -0.27 -17.56 16 19 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.10 1.79 6.61 -3.06 -0.02 1.77 16 28 H 0.07 0.85 7.45 -51.93 -0.39 0.47 16 29 H 0.05 0.81 7.48 -51.93 -0.39 0.42 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.87 5.15 -51.93 -0.27 0.60 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.74 7.76 -51.93 -0.40 0.34 16 34 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.93 7.95 -51.93 -0.41 0.52 16 42 H 0.07 0.76 4.92 -51.93 -0.26 0.51 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.39 10.10 7.56 -40.82 -0.31 9.80 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 LS Contribution 383.42 15.07 5.78 5.78 Total: -1.00 -31.58 383.42 -10.10 -41.68 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -8.69 Total: 7.88 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.36 Total: -2.03 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.11 Total: -54.43 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.69 Total: -15.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.58 -10.10 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970150310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.787 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds