Wall clock time and date at job start Fri Apr 10 2020 22:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.36938 * 125.64463 * 204.10316 * 5 4 2 7 7 H 1.08003 * 119.99775 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00396 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99373 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00409 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47353 * 89.99888 * 10 8 6 12 12 H 1.48502 * 109.47169 * 209.99909 * 10 8 6 13 13 H 1.48498 * 109.46810 * 329.99915 * 10 8 6 14 14 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 15 15 C 1.54325 * 107.27065 * 358.94051 * 14 5 4 16 16 H 1.08999 * 110.87305 * 96.24314 * 15 14 5 17 17 N 1.46501 * 110.71973 * 219.44858 * 15 14 5 18 18 C 1.34776 * 119.99706 * 268.51725 * 17 15 14 19 19 O 1.21283 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00043 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46974 * 180.02562 * 20 18 17 22 22 H 1.08992 * 110.55479 * 305.70341 * 21 20 18 23 23 C 1.54995 * 110.61625 * 182.82210 * 21 20 18 24 24 C 1.54994 * 102.01318 * 204.59670 * 23 21 20 25 25 C 1.52994 * 110.34278 * 262.02723 * 24 23 21 26 26 C 1.52996 * 110.68480 * 139.47607 * 24 23 21 27 27 C 1.54104 * 104.24799 * 20.66928 * 24 23 21 28 28 O 1.43741 * 107.29842 * 2.16226 * 27 24 23 29 29 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 30 30 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 31 31 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 32 32 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 33 33 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 34 34 H 0.97006 * 119.99857 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.88350 * 239.52260 * 14 5 4 36 36 H 1.08997 * 110.01690 * 118.42776 * 14 5 4 37 37 H 0.96994 * 120.00419 * 88.52568 * 17 15 14 38 38 H 1.09000 * 109.46834 * 300.00055 * 20 18 17 39 39 H 1.08997 * 109.47171 * 60.00503 * 20 18 17 40 40 H 1.09000 * 110.90676 * 322.67216 * 23 21 20 41 41 H 1.08994 * 110.90855 * 86.28371 * 23 21 20 42 42 H 1.09003 * 109.47203 * 176.21182 * 25 24 23 43 43 H 1.08996 * 109.47091 * 296.21538 * 25 24 23 44 44 H 1.09006 * 109.46975 * 56.21111 * 25 24 23 45 45 H 1.09006 * 109.47073 * 303.58497 * 26 24 23 46 46 H 1.08995 * 109.47561 * 63.58743 * 26 24 23 47 47 H 1.09005 * 109.47259 * 183.59100 * 26 24 23 48 48 H 1.09007 * 109.87642 * 242.73699 * 27 24 23 49 49 H 1.08996 * 109.88171 * 121.59258 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4640 -1.5664 -1.6074 7 1 4.3331 -1.5119 -2.6780 8 6 5.6834 -1.9642 -1.0767 9 7 5.8427 -2.0310 0.2281 10 14 7.0981 -2.4046 -2.2142 11 1 7.9009 -1.1883 -2.4997 12 1 7.9588 -3.4239 -1.5620 13 1 6.5593 -2.9516 -3.4853 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4451 -1.6615 1.4229 17 7 2.2288 0.0495 2.3814 18 6 2.2006 -0.4916 3.6154 19 8 2.0576 -1.6885 3.7496 20 6 2.3467 0.3904 4.8285 21 6 2.2811 -0.4674 6.0937 22 1 1.3723 -1.0690 6.1015 23 6 2.3578 0.4220 7.3608 24 6 2.9139 -0.5674 8.4163 25 6 1.7741 -1.1403 9.2608 26 6 3.9476 0.1206 9.3101 27 6 3.5780 -1.6793 7.5811 28 8 3.4492 -1.3097 6.1980 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0699 32 1 1.4518 -1.6703 -1.4025 33 1 2.1559 -0.1719 -2.0837 34 1 6.6948 -2.3093 0.5991 35 1 4.2427 -0.5998 1.0597 36 1 3.6662 -2.2884 1.0422 37 1 2.3434 1.0067 2.2741 38 1 3.3060 0.9064 4.7891 39 1 1.5401 1.1235 4.8440 40 1 3.0446 1.2549 7.2103 41 1 1.3686 0.7814 7.6442 42 1 2.1720 -1.8832 9.9522 43 1 1.3001 -0.3367 9.8243 44 1 1.0381 -1.6092 8.6077 45 1 4.7416 0.5392 8.6917 46 1 3.4662 0.9199 9.8735 47 1 4.3715 -0.6073 10.0020 48 1 3.0729 -2.6287 7.7596 49 1 4.6320 -1.7626 7.8459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080111708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:55 Heat of formation + Delta-G solvation = -71.765280 kcal Electronic energy + Delta-G solvation = -26746.996651 eV Core-core repulsion = 23095.142228 eV Total energy + Delta-G solvation = -3651.854424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18387 -39.13572 -37.38271 -34.66183 -33.76406 -32.62716 -32.07667 -30.31468 -28.31177 -27.63702 -26.89223 -25.86274 -25.52308 -23.56551 -21.73887 -20.43724 -19.91269 -19.68693 -19.21957 -16.97280 -16.76757 -16.21957 -15.83209 -15.43154 -15.17150 -14.79459 -14.31616 -14.07483 -13.82732 -13.70303 -13.56170 -13.37348 -13.02956 -12.79987 -12.70007 -12.58155 -12.16805 -12.03664 -11.76334 -11.68649 -11.64271 -11.44082 -11.28047 -10.98571 -10.89905 -10.84567 -10.73547 -10.67765 -10.52802 -10.32290 -9.91216 -9.87424 -9.64181 -9.49915 -9.28898 -8.55525 -8.33479 -6.76759 -5.62164 -2.97924 3.13182 3.44578 3.49132 3.52194 3.60531 3.88248 4.22071 4.49430 4.55879 4.65421 4.86138 4.96313 5.08933 5.10976 5.14586 5.32061 5.36685 5.38381 5.39594 5.45379 5.50244 5.50629 5.60873 5.62142 5.67003 5.69169 5.74074 5.83109 5.87179 5.94257 6.01013 6.04713 6.06067 6.10444 6.20766 6.26722 6.41482 6.56087 6.68055 6.88577 7.02133 7.02738 7.64523 7.67811 7.93431 8.04563 8.32939 8.75570 9.28317 9.89041 10.54323 11.48076 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003306 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.445003 B = 8466.276219 C = 9882.480083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 H 0.076 0.924 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.174 3.826 15 C 0.121 3.879 16 H 0.087 0.913 17 N -0.716 5.716 18 C 0.512 3.488 19 O -0.529 6.529 20 C -0.137 4.137 21 C 0.096 3.904 22 H 0.075 0.925 23 C -0.143 4.143 24 C -0.102 4.102 25 C -0.138 4.138 26 C -0.136 4.136 27 C 0.053 3.947 28 O -0.354 6.354 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.041 0.959 34 H 0.252 0.748 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.394 0.606 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.476 8.956 16.568 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.360 4.360 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.048 3.952 15 C 0.016 3.984 16 H 0.105 0.895 17 N -0.367 5.367 18 C 0.297 3.703 19 O -0.405 6.405 20 C -0.177 4.177 21 C 0.038 3.962 22 H 0.093 0.907 23 C -0.181 4.181 24 C -0.102 4.102 25 C -0.196 4.196 26 C -0.193 4.193 27 C -0.024 4.024 28 O -0.272 6.272 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.227 0.773 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.209 7.914 16.511 20.963 hybrid contribution 0.849 0.290 -0.413 0.988 sum -9.360 8.204 16.098 20.348 Atomic orbital electron populations 1.21687 0.95159 1.01716 1.00839 1.22616 0.94721 0.99485 0.96603 0.90559 1.21585 0.87692 0.94984 0.94320 1.44418 1.07817 1.79201 1.01879 1.19035 0.89324 1.38710 0.88892 0.90396 1.24840 0.97880 1.01750 0.95990 1.69989 1.24119 1.53128 1.09142 0.86130 0.82391 0.77774 0.79519 1.21675 1.21683 1.20719 1.21457 0.90193 1.00395 0.83165 1.22450 1.00129 0.92778 0.83016 0.89506 1.45925 1.74282 1.10757 1.05725 1.20359 0.76592 0.88993 0.84311 1.90723 1.48277 1.15292 1.86208 1.21740 1.04866 0.98517 0.92578 1.22766 0.90398 0.90386 0.92658 0.90695 1.23363 1.01949 0.98310 0.94471 1.21986 0.96323 0.95868 0.96055 1.21875 0.97434 1.00798 0.99460 1.21835 0.98154 1.00226 0.99116 1.23293 1.00886 0.96354 0.81858 1.89063 1.45451 1.68574 1.24158 0.93181 0.92885 0.92651 0.96133 0.94082 0.93729 0.93213 0.93538 0.77267 0.88138 0.88005 0.90207 0.90162 0.92334 0.92370 0.92270 0.92121 0.92465 0.92415 0.92456 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.31 37.16 0.35 -1.51 16 2 C -0.11 -1.95 3.27 -88.47 -0.29 -2.24 16 3 H 0.08 1.24 8.01 -51.93 -0.42 0.83 16 4 C 0.14 2.94 6.70 -2.52 -0.02 2.93 16 5 N -0.61 -16.01 3.39 -170.08 -0.58 -16.59 16 6 C -0.23 -6.64 10.28 -15.06 -0.15 -6.80 16 7 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -28.26 10.31 55.49 0.57 -27.69 16 10 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.17 4.48 5.12 -3.07 -0.02 4.46 16 15 C 0.12 2.40 2.79 -66.09 -0.18 2.22 16 16 H 0.09 1.85 7.44 -51.93 -0.39 1.46 16 17 N -0.72 -11.81 5.10 -52.03 -0.27 -12.08 16 18 C 0.51 8.82 7.75 -10.98 -0.09 8.73 16 19 O -0.53 -11.60 15.26 -2.54 -0.04 -11.63 16 20 C -0.14 -1.66 5.47 -27.88 -0.15 -1.82 16 21 C 0.10 1.22 2.77 -25.68 -0.07 1.15 16 22 H 0.08 1.01 7.96 -51.93 -0.41 0.60 16 23 C -0.14 -1.30 5.71 -24.62 -0.14 -1.44 16 24 C -0.10 -0.92 0.99 -152.88 -0.15 -1.07 16 25 C -0.14 -1.06 8.25 37.15 0.31 -0.75 16 26 C -0.14 -1.04 8.28 37.16 0.31 -0.73 16 27 C 0.05 0.64 7.04 37.73 0.27 0.91 16 28 O -0.35 -5.71 10.75 -43.32 -0.47 -6.18 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.77 8.07 -51.93 -0.42 0.36 16 32 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.05 1.41 7.27 -51.93 -0.38 1.03 16 36 H 0.05 1.40 7.51 -51.93 -0.39 1.01 16 37 H 0.39 5.23 8.56 -40.82 -0.35 4.88 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 41 H 0.08 0.59 7.86 -51.93 -0.41 0.18 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.68 7.69 -51.92 -0.40 0.28 16 49 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 LS Contribution 384.44 15.07 5.79 5.79 Total: -1.00 -35.52 384.44 -9.11 -44.63 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -8.97 Total: 2.28 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -0.13 Total: 3.71 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.27 Total: -56.35 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.50 Total: -17.81 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.52 -9.11 -44.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080111708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.134 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds