Wall clock time and date at job start Fri Apr 10 2020 22:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91940 * 2 1 4 4 C 1.54918 * 111.00284 * 236.10352 * 2 1 3 5 5 N 1.47425 * 104.82827 * 204.91696 * 4 2 1 6 6 C 1.36938 * 125.64463 * 204.10316 * 5 4 2 7 7 H 1.08003 * 119.99775 * 359.97438 * 6 5 4 8 8 C 1.38807 * 120.00396 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99373 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00409 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47353 * 89.99888 * 10 8 6 12 12 H 1.48502 * 109.47169 * 209.99909 * 10 8 6 13 13 H 1.48498 * 109.46810 * 329.99915 * 10 8 6 14 14 C 1.47015 * 108.70882 * 24.12597 * 5 4 2 15 15 C 1.54325 * 107.27065 * 358.94051 * 14 5 4 16 16 H 1.08999 * 110.87305 * 96.24314 * 15 14 5 17 17 N 1.46501 * 110.71973 * 219.44858 * 15 14 5 18 18 C 1.34776 * 119.99706 * 268.51725 * 17 15 14 19 19 O 1.21283 * 120.00117 * 0.02562 * 18 17 15 20 20 C 1.50702 * 120.00043 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.46974 * 180.02562 * 20 18 17 22 22 H 1.08992 * 110.55479 * 305.70341 * 21 20 18 23 23 C 1.54995 * 110.61625 * 182.82210 * 21 20 18 24 24 C 1.54994 * 102.01318 * 204.59670 * 23 21 20 25 25 C 1.52994 * 110.34278 * 262.02723 * 24 23 21 26 26 C 1.52996 * 110.68480 * 139.47607 * 24 23 21 27 27 C 1.54104 * 104.24799 * 20.66928 * 24 23 21 28 28 O 1.43741 * 107.29842 * 2.16226 * 27 24 23 29 29 H 1.08999 * 109.46952 * 296.09720 * 1 2 3 30 30 H 1.08996 * 109.47229 * 56.09549 * 1 2 3 31 31 H 1.09000 * 109.47156 * 176.09970 * 1 2 3 32 32 H 1.08999 * 110.35942 * 323.74888 * 4 2 1 33 33 H 1.08996 * 110.36556 * 86.07721 * 4 2 1 34 34 H 0.97006 * 119.99857 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.88350 * 239.52260 * 14 5 4 36 36 H 1.08997 * 110.01690 * 118.42776 * 14 5 4 37 37 H 0.96994 * 120.00419 * 88.52568 * 17 15 14 38 38 H 1.09000 * 109.46834 * 300.00055 * 20 18 17 39 39 H 1.08997 * 109.47171 * 60.00503 * 20 18 17 40 40 H 1.09000 * 110.90676 * 322.67216 * 23 21 20 41 41 H 1.08994 * 110.90855 * 86.28371 * 23 21 20 42 42 H 1.09003 * 109.47203 * 176.21182 * 25 24 23 43 43 H 1.08996 * 109.47091 * 296.21538 * 25 24 23 44 44 H 1.09006 * 109.46975 * 56.21111 * 25 24 23 45 45 H 1.09006 * 109.47073 * 303.58497 * 26 24 23 46 46 H 1.08995 * 109.47561 * 63.58743 * 26 24 23 47 47 H 1.09005 * 109.47259 * 183.59100 * 26 24 23 48 48 H 1.09007 * 109.87642 * 242.73699 * 27 24 23 49 49 H 1.08996 * 109.88171 * 121.59258 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2005 5 7 3.4271 -1.2430 -0.7735 6 6 4.4640 -1.5664 -1.6074 7 1 4.3331 -1.5119 -2.6780 8 6 5.6834 -1.9642 -1.0767 9 7 5.8427 -2.0310 0.2281 10 14 7.0981 -2.4046 -2.2142 11 1 7.9009 -1.1883 -2.4997 12 1 7.9588 -3.4239 -1.5620 13 1 6.5593 -2.9516 -3.4853 14 6 3.4675 -1.2742 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 1.4451 -1.6615 1.4229 17 7 2.2288 0.0495 2.3814 18 6 2.2006 -0.4916 3.6154 19 8 2.0576 -1.6885 3.7496 20 6 2.3467 0.3904 4.8285 21 6 2.2811 -0.4674 6.0937 22 1 1.3723 -1.0690 6.1015 23 6 2.3578 0.4220 7.3608 24 6 2.9139 -0.5674 8.4163 25 6 1.7741 -1.1403 9.2608 26 6 3.9476 0.1206 9.3101 27 6 3.5780 -1.6793 7.5811 28 8 3.4492 -1.3097 6.1980 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5732 -0.8529 31 1 -0.3633 -1.0253 -0.0699 32 1 1.4518 -1.6703 -1.4025 33 1 2.1559 -0.1719 -2.0837 34 1 6.6948 -2.3093 0.5991 35 1 4.2427 -0.5998 1.0597 36 1 3.6662 -2.2884 1.0422 37 1 2.3434 1.0067 2.2741 38 1 3.3060 0.9064 4.7891 39 1 1.5401 1.1235 4.8440 40 1 3.0446 1.2549 7.2103 41 1 1.3686 0.7814 7.6442 42 1 2.1720 -1.8832 9.9522 43 1 1.3001 -0.3367 9.8243 44 1 1.0381 -1.6092 8.6077 45 1 4.7416 0.5392 8.6917 46 1 3.4662 0.9199 9.8735 47 1 4.3715 -0.6073 10.0020 48 1 3.0729 -2.6287 7.7596 49 1 4.6320 -1.7626 7.8459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080111708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:53 Heat of formation + Delta-G solvation = -96.579589 kcal Electronic energy + Delta-G solvation = -26748.072681 eV Core-core repulsion = 23095.142228 eV Total energy + Delta-G solvation = -3652.930453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.27752 -40.46900 -39.02914 -35.63277 -35.46202 -34.28222 -33.18897 -32.16550 -29.81685 -28.26902 -28.09731 -27.29686 -26.74601 -25.27683 -22.99623 -21.95302 -21.53138 -20.95300 -20.21132 -18.89791 -18.11396 -17.50715 -17.15846 -16.85146 -16.42409 -16.22903 -15.67509 -15.48421 -15.24876 -14.77808 -14.65321 -14.43978 -14.21863 -14.14739 -14.07437 -13.73384 -13.55243 -13.33403 -13.08592 -12.89588 -12.83305 -12.72867 -12.58188 -12.43974 -12.26523 -12.19530 -12.01605 -11.86967 -11.67204 -11.65226 -11.57038 -11.47934 -11.44583 -10.78631 -10.72232 -10.52672 -9.92706 -8.94394 -7.85383 -5.24298 1.42427 1.46012 1.54794 1.76304 2.26616 2.48923 2.97834 3.32297 3.45870 3.57852 3.71165 3.77140 3.89123 3.93846 4.04210 4.06967 4.12212 4.21941 4.37589 4.45172 4.53904 4.60545 4.61917 4.66359 4.73840 4.77778 4.79677 4.81495 4.87739 4.88597 5.03494 5.04763 5.06950 5.07882 5.15298 5.22825 5.25947 5.31461 5.32121 5.43806 5.45025 5.50107 5.63520 5.81114 6.07778 6.15162 6.69383 7.04865 7.41993 7.74575 8.38585 9.23427 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015548 B = 0.003306 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.445003 B = 8466.276219 C = 9882.480083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.092 4.092 3 H 0.094 0.906 4 C 0.131 3.869 5 N -0.629 5.629 6 C -0.243 4.243 7 H 0.089 0.911 8 C -0.073 4.073 9 N -0.953 5.953 10 Si 0.983 3.017 11 H -0.281 1.281 12 H -0.299 1.299 13 H -0.265 1.265 14 C 0.189 3.811 15 C 0.136 3.864 16 H 0.068 0.932 17 N -0.705 5.705 18 C 0.503 3.497 19 O -0.585 6.585 20 C -0.126 4.126 21 C 0.086 3.914 22 H 0.059 0.941 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.136 4.136 26 C -0.133 4.133 27 C 0.043 3.957 28 O -0.401 6.401 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.243 0.757 35 H 0.016 0.984 36 H -0.017 1.017 37 H 0.414 0.586 38 H 0.111 0.889 39 H 0.152 0.848 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.048 0.952 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 11.989 16.851 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.112 0.888 4 C 0.006 3.994 5 N -0.355 5.355 6 C -0.372 4.372 7 H 0.107 0.893 8 C -0.265 4.265 9 N -0.602 5.602 10 Si 0.811 3.189 11 H -0.207 1.207 12 H -0.226 1.226 13 H -0.190 1.190 14 C 0.063 3.937 15 C 0.030 3.970 16 H 0.087 0.913 17 N -0.357 5.357 18 C 0.292 3.708 19 O -0.464 6.464 20 C -0.165 4.165 21 C 0.028 3.972 22 H 0.077 0.923 23 C -0.168 4.168 24 C -0.098 4.098 25 C -0.193 4.193 26 C -0.190 4.190 27 C -0.034 4.034 28 O -0.321 6.321 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.034 0.966 36 H 0.001 0.999 37 H 0.251 0.749 38 H 0.129 0.871 39 H 0.170 0.830 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.067 0.933 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.950 11.007 16.771 23.350 hybrid contribution 1.366 -0.736 -0.540 1.643 sum -10.584 10.271 16.231 21.931 Atomic orbital electron populations 1.21640 0.91644 1.02104 1.03127 1.22536 0.97320 0.98891 0.92468 0.88808 1.21881 0.85173 0.95773 0.96597 1.44752 1.09554 1.79219 1.01986 1.19531 0.90097 1.37679 0.89848 0.89280 1.25789 1.00865 1.02401 0.97470 1.70275 1.24086 1.54629 1.11245 0.85014 0.78740 0.77336 0.77860 1.20733 1.22600 1.18982 1.21082 0.92979 0.96177 0.83481 1.21983 0.96043 0.93670 0.85342 0.91346 1.45784 1.73773 1.11386 1.04728 1.21399 0.74868 0.88961 0.85619 1.90703 1.50637 1.18072 1.87011 1.21843 1.07207 0.98114 0.89350 1.22956 0.88788 0.90708 0.94738 0.92315 1.23338 1.03711 0.97663 0.92043 1.21982 0.96924 0.94813 0.96042 1.21865 0.96723 1.01495 0.99237 1.21814 0.97608 1.00699 0.98872 1.23485 1.01277 0.97466 0.81151 1.89018 1.46901 1.69692 1.26522 0.91133 0.90261 0.93354 0.95931 0.92504 0.94762 0.96566 0.99916 0.74927 0.87130 0.83048 0.89076 0.87531 0.92005 0.90342 0.93292 0.92874 0.90587 0.92006 0.93335 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.31 71.98 0.67 -2.36 16 2 C -0.09 -2.98 3.27 -9.40 -0.03 -3.01 16 3 H 0.09 2.75 8.01 -2.39 -0.02 2.73 16 4 C 0.13 5.36 6.70 86.86 0.58 5.94 16 5 N -0.63 -34.05 3.39 -692.00 -2.35 -36.39 16 6 C -0.24 -14.20 10.28 84.03 0.86 -13.33 16 7 H 0.09 4.87 7.83 -2.91 -0.02 4.85 16 8 C -0.07 -4.38 5.49 84.86 0.47 -3.91 16 9 N -0.95 -62.05 10.31 21.65 0.22 -61.82 16 10 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 C 0.19 10.33 5.12 86.73 0.44 10.77 16 15 C 0.14 5.49 2.79 46.18 0.13 5.62 16 16 H 0.07 3.04 7.44 -2.39 -0.02 3.02 16 17 N -0.70 -22.96 5.10 -436.91 -2.23 -25.18 16 18 C 0.50 17.52 7.75 87.66 0.68 18.20 16 19 O -0.58 -27.06 15.26 4.70 0.07 -26.99 16 20 C -0.13 -2.85 5.47 29.85 0.16 -2.69 16 21 C 0.09 2.14 2.77 31.28 0.09 2.23 16 22 H 0.06 1.62 7.96 -2.39 -0.02 1.60 16 23 C -0.13 -2.04 5.71 31.96 0.18 -1.85 16 24 C -0.10 -1.62 0.99 -51.13 -0.05 -1.67 16 25 C -0.14 -1.84 8.25 71.98 0.59 -1.25 16 26 C -0.13 -1.75 8.28 71.98 0.60 -1.15 16 27 C 0.04 1.08 7.04 72.36 0.51 1.58 16 28 O -0.40 -13.58 10.75 -141.24 -1.52 -15.10 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.23 8.07 -2.39 -0.02 1.21 16 32 H 0.02 0.93 7.98 -2.39 -0.02 0.91 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.24 15.52 8.31 -92.70 -0.77 14.75 16 35 H 0.02 0.97 7.27 -2.39 -0.02 0.96 16 36 H -0.02 -1.15 7.51 -2.39 -0.02 -1.17 16 37 H 0.41 10.11 8.56 -92.71 -0.79 9.32 16 38 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 1.25 7.79 -2.39 -0.02 1.23 16 41 H 0.11 1.13 7.86 -2.39 -0.02 1.11 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 48 H 0.05 1.24 7.69 -2.38 -0.02 1.22 16 49 H 0.08 1.93 7.69 -2.39 -0.02 1.91 16 Total: -1.00 -85.30 384.44 2.23 -83.07 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.12 Total: 19.33 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 5.88 Total: 13.12 kcal Atomic # 7 Polarization: -119.05 SS G_CDS: -4.35 Total: -123.40 kcal Atomic # 8 Polarization: -40.65 SS G_CDS: -1.45 Total: -42.09 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -85.30 2.23 -83.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080111708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.510 kcal (2) G-P(sol) polarization free energy of solvation -85.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds