Wall clock time and date at job start Fri Apr 10 2020 22:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.47129 * 2 1 4 4 C 1.34778 * 120.00159 * 275.83488 * 3 2 1 5 5 O 1.21285 * 119.99640 * 5.63272 * 4 3 2 6 6 C 1.50699 * 120.00200 * 185.63334 * 4 3 2 7 7 C 1.52997 * 109.46945 * 284.59835 * 6 4 3 8 8 C 1.53006 * 109.46926 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.47346 * 59.99880 * 8 7 6 10 10 O 1.42898 * 109.47117 * 59.99953 * 9 8 7 11 11 C 1.53006 * 109.46721 * 300.00183 * 9 8 7 12 12 C 1.52991 * 109.47156 * 60.00154 * 11 9 8 13 13 C 1.46503 * 119.99999 * 95.82782 * 3 2 1 14 14 H 1.09003 * 110.64078 * 179.17252 * 13 3 2 15 15 C 1.55155 * 110.87751 * 302.43227 * 13 3 2 16 16 C 1.54907 * 101.58455 * 82.92506 * 15 13 3 17 17 N 1.47425 * 104.82806 * 37.01329 * 16 15 13 18 18 C 1.36938 * 125.64572 * 156.13458 * 17 16 15 19 19 H 1.08000 * 120.00102 * 179.68595 * 18 17 16 20 20 C 1.38809 * 120.00348 * 359.69105 * 18 17 16 21 21 N 1.31623 * 119.99856 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00327 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47236 * 89.99961 * 22 20 18 24 24 H 1.48510 * 109.46912 * 209.99952 * 22 20 18 25 25 H 1.48505 * 109.46985 * 329.99568 * 22 20 18 26 26 C 1.47017 * 108.70705 * 335.86859 * 17 16 15 27 27 H 1.09000 * 109.47512 * 300.00117 * 1 2 3 28 28 H 1.09001 * 109.46779 * 59.99792 * 1 2 3 29 29 H 1.08998 * 109.46990 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47079 * 240.00198 * 2 1 3 31 31 H 1.09002 * 109.46755 * 119.99653 * 2 1 3 32 32 H 1.08998 * 109.47125 * 44.59213 * 6 4 3 33 33 H 1.09005 * 109.47320 * 299.99372 * 7 6 4 34 34 H 1.08998 * 109.47360 * 60.00029 * 7 6 4 35 35 H 1.08998 * 109.47088 * 299.99343 * 8 7 6 36 36 H 1.09007 * 109.47168 * 179.97438 * 8 7 6 37 37 H 1.09001 * 109.47199 * 180.02562 * 9 8 7 38 38 H 0.96692 * 114.00083 * 60.00344 * 10 9 8 39 39 H 1.09000 * 109.46906 * 299.99423 * 11 9 8 40 40 H 1.09006 * 109.46901 * 180.02562 * 11 9 8 41 41 H 1.09007 * 109.46965 * 179.97438 * 12 11 9 42 42 H 1.09000 * 109.47809 * 59.99822 * 12 11 9 43 43 H 1.08995 * 111.00242 * 201.00766 * 15 13 3 44 44 H 1.09001 * 110.99961 * 324.81512 * 15 13 3 45 45 H 1.08995 * 110.36953 * 278.17921 * 16 15 13 46 46 H 1.09002 * 110.36559 * 155.84510 * 16 15 13 47 47 H 0.97000 * 120.00399 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.88931 * 120.47738 * 26 17 16 49 49 H 1.09005 * 109.88455 * 241.49086 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1311 2.0561 -1.1611 5 8 1.7333 1.5582 -2.1930 6 6 2.7515 3.4294 -1.1773 7 6 1.7559 4.4454 -0.6140 8 6 2.3855 5.8398 -0.6310 9 6 2.7438 6.2202 -2.0690 10 8 1.5605 6.2221 -2.8701 11 6 3.7394 5.2040 -2.6323 12 6 3.1097 3.8098 -2.6153 13 6 2.3840 2.0289 1.2622 14 1 2.7393 3.0439 1.0844 15 6 1.1872 2.0311 2.2495 16 6 1.2937 0.6161 2.8708 17 7 2.7414 0.3659 2.9934 18 6 3.3292 -0.5047 3.8719 19 1 4.4029 -0.6206 3.8803 20 6 2.5451 -1.2383 4.7515 21 7 1.2365 -1.0967 4.7416 22 14 3.3469 -2.4264 5.9494 23 1 3.6631 -1.7159 7.2144 24 1 2.4159 -3.5486 6.2313 25 1 4.5989 -2.9594 5.3547 26 6 3.4490 1.2012 2.0121 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6539 3.4277 -0.5659 33 1 0.8535 4.4473 -1.2253 34 1 1.5004 4.1742 0.4103 35 1 3.2881 5.8384 -0.0199 36 1 1.6761 6.5638 -0.2300 37 1 3.1927 7.2134 -2.0810 38 1 0.8837 6.8444 -2.5705 39 1 4.6420 5.2027 -2.0212 40 1 3.9950 5.4753 -3.6566 41 1 3.8189 3.0860 -3.0170 42 1 2.2071 3.8112 -3.2264 43 1 1.3097 2.8021 3.0102 44 1 0.2432 2.1554 1.7188 45 1 0.8356 -0.1225 2.2130 46 1 0.8208 0.5963 3.8527 47 1 0.6885 -1.6096 5.3560 48 1 4.1433 1.8673 2.5242 49 1 3.9922 0.5686 1.3100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033809393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:54 Heat of formation + Delta-G solvation = -63.672002 kcal Electronic energy + Delta-G solvation = -28146.936427 eV Core-core repulsion = 24495.432954 eV Total energy + Delta-G solvation = -3651.503473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53286 -38.80323 -37.51739 -35.10518 -34.40460 -32.13235 -31.40092 -30.77467 -29.59043 -29.21438 -26.96851 -24.59394 -24.06852 -22.86285 -22.04626 -20.91232 -20.26087 -19.90245 -18.30962 -17.31262 -17.04670 -16.81717 -16.05077 -15.37364 -15.01769 -14.81563 -14.54884 -14.49754 -13.84709 -13.51374 -13.39132 -13.13015 -12.86092 -12.72824 -12.41045 -12.32347 -12.12930 -11.91268 -11.85331 -11.66703 -11.60201 -11.30704 -11.16358 -11.07841 -10.88301 -10.84331 -10.61961 -10.48205 -10.31423 -10.16850 -9.99170 -9.94041 -9.88668 -9.64620 -9.20300 -8.67845 -8.21237 -6.88675 -5.70195 -3.12437 2.92756 3.34778 3.37178 3.42605 3.44054 4.06368 4.44097 4.47512 4.55873 4.67747 4.94709 4.98527 5.08609 5.19490 5.22230 5.33154 5.36890 5.38597 5.44238 5.57343 5.59757 5.65721 5.66836 5.71874 5.82546 5.85811 5.86237 5.98207 6.02831 6.08559 6.18771 6.21851 6.27661 6.39923 6.42344 6.44878 6.50827 6.57974 6.68123 6.73146 7.03310 7.47787 7.48064 7.57826 7.80505 7.86487 8.30838 8.53301 9.16722 9.77284 10.40986 11.33018 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024427 B = 0.003631 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.995257 B = 7710.254996 C = 8041.898501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.516 3.484 5 O -0.548 6.548 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.150 4.150 9 C 0.104 3.896 10 O -0.561 6.561 11 C -0.112 4.112 12 C -0.095 4.095 13 C 0.117 3.883 14 H 0.094 0.906 15 C -0.158 4.158 16 C 0.141 3.859 17 N -0.601 5.601 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.124 3.876 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.374 0.626 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.031 0.969 46 H 0.105 0.895 47 H 0.252 0.748 48 H 0.031 0.969 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 14.768 -10.421 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.321 5.321 4 C 0.304 3.696 5 O -0.426 6.426 6 C -0.126 4.126 7 C -0.147 4.147 8 C -0.188 4.188 9 C 0.045 3.955 10 O -0.367 6.367 11 C -0.150 4.150 12 C -0.132 4.132 13 C 0.013 3.987 14 H 0.112 0.888 15 C -0.198 4.198 16 C 0.016 3.984 17 N -0.328 5.328 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.208 1.208 26 C -0.003 4.003 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.220 0.780 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.049 0.951 46 H 0.122 0.878 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.439 13.859 -11.120 17.827 hybrid contribution 0.171 -0.224 1.135 1.170 sum 1.610 13.635 -9.985 16.977 Atomic orbital electron populations 1.22199 0.96255 1.01894 1.01920 1.21643 0.94411 0.82002 1.03691 1.47994 1.63958 1.14151 1.05992 1.20578 0.78751 0.87124 0.83125 1.90647 1.49605 1.69880 1.32494 1.21329 0.99586 0.92489 0.99245 1.21512 0.98427 0.93113 1.01615 1.22250 1.01740 0.97451 0.97349 1.21795 0.86292 0.97764 0.89642 1.86561 1.28260 1.65890 1.55942 1.21573 0.96996 0.94732 1.01676 1.21243 1.02009 0.95170 0.94815 1.22363 0.96860 0.95982 0.83521 0.88789 1.23419 0.96438 1.02238 0.97660 1.22226 0.85477 0.88842 1.01810 1.44511 1.02030 1.47111 1.39161 1.19052 0.91523 1.14520 1.10163 0.90544 1.24760 0.95551 1.00231 0.99836 1.69791 1.02858 1.44231 1.39973 0.86095 0.78052 0.80393 0.81070 1.21626 1.21665 1.20773 1.21666 0.93575 0.93357 0.91659 0.91561 0.93123 0.92230 0.91736 0.87479 0.89194 0.90778 0.90803 0.90726 0.91402 0.92964 0.77959 0.90675 0.91165 0.91830 0.90078 0.91190 0.91729 0.95146 0.87758 0.93717 0.95122 0.95452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.28 37.16 0.34 -2.46 16 2 C 0.10 1.91 4.98 -4.04 -0.02 1.89 16 3 N -0.59 -9.88 2.45 -164.02 -0.40 -10.29 16 4 C 0.52 8.48 6.85 -10.99 -0.08 8.41 16 5 O -0.55 -10.72 15.57 5.55 0.09 -10.64 16 6 C -0.11 -1.32 1.66 -91.77 -0.15 -1.48 16 7 C -0.11 -1.19 4.68 -26.73 -0.12 -1.32 16 8 C -0.15 -1.24 5.64 -26.73 -0.15 -1.39 16 9 C 0.10 0.88 3.77 -26.73 -0.10 0.78 16 10 O -0.56 -5.37 11.97 -35.23 -0.42 -5.79 16 11 C -0.11 -1.05 5.66 -26.73 -0.15 -1.21 16 12 C -0.09 -1.16 4.47 -26.74 -0.12 -1.28 16 13 C 0.12 1.89 2.64 -66.09 -0.17 1.72 16 14 H 0.09 1.27 4.50 -51.93 -0.23 1.04 16 15 C -0.16 -2.76 6.05 -24.58 -0.15 -2.91 16 16 C 0.14 3.15 4.77 -2.53 -0.01 3.14 16 17 N -0.60 -14.34 2.93 -170.08 -0.50 -14.84 16 18 C -0.22 -5.97 10.27 -15.06 -0.15 -6.12 16 19 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -25.70 10.09 55.49 0.56 -25.14 16 22 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 C 0.12 2.43 6.20 -3.06 -0.02 2.41 16 27 H 0.07 1.15 5.00 -51.93 -0.26 0.89 16 28 H 0.05 0.87 7.97 -51.93 -0.41 0.45 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 1.19 7.69 -51.93 -0.40 0.79 16 31 H 0.11 2.23 4.91 -51.93 -0.26 1.98 16 32 H 0.09 1.04 7.19 -51.93 -0.37 0.67 16 33 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 34 H 0.07 0.83 5.98 -51.93 -0.31 0.52 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.37 2.11 9.08 45.56 0.41 2.53 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.18 7.47 -51.93 -0.39 0.79 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.06 6.78 -51.93 -0.35 0.71 16 45 H 0.03 0.71 4.21 -51.93 -0.22 0.49 16 46 H 0.10 2.71 5.87 -51.93 -0.30 2.40 16 47 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -30.87 358.05 -8.72 -39.59 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.26 Total: 5.37 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.15 Total: -0.13 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.34 Total: -50.26 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.34 Total: -16.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.87 -8.72 -39.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033809393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.080 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds