Wall clock time and date at job start Fri Apr 10 2020 22:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 C 1.53003 * 109.47417 * 119.99526 * 2 1 3 5 5 O 1.42893 * 109.46986 * 64.99845 * 4 2 1 6 6 C 1.42901 * 114.00271 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.47041 * 29.99887 * 6 5 4 8 8 C 1.53004 * 109.47094 * 270.00486 * 6 5 4 9 9 C 1.50697 * 109.47567 * 150.00518 * 6 5 4 10 10 O 1.21283 * 119.99974 * 4.99919 * 9 6 5 11 11 N 1.34774 * 120.00345 * 185.00197 * 9 6 5 12 12 C 1.47889 * 134.34502 * 179.97438 * 11 9 6 13 13 C 1.52374 * 85.59061 * 156.55754 * 12 11 9 14 14 C 1.47894 * 134.33987 * 0.06152 * 11 9 6 15 15 C 1.53656 * 116.38986 * 141.35925 * 13 12 11 16 16 C 1.54597 * 102.73161 * 95.48609 * 15 13 12 17 17 N 1.47136 * 107.36670 * 20.75459 * 16 15 13 18 18 C 1.36938 * 125.58996 * 180.66450 * 17 16 15 19 19 H 1.08002 * 119.99889 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00054 * 0.02562 * 18 17 16 21 21 N 1.31624 * 119.99551 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46947 * 90.00409 * 22 20 18 24 24 H 1.48501 * 109.46857 * 210.00030 * 22 20 18 25 25 H 1.48501 * 109.46963 * 329.99874 * 22 20 18 26 26 C 1.47729 * 108.82430 * 0.92790 * 17 16 15 27 27 H 1.08998 * 109.47059 * 60.00713 * 1 2 3 28 28 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47438 * 300.00233 * 1 2 3 30 30 H 1.08999 * 109.47438 * 239.99767 * 2 1 3 31 31 H 1.09002 * 109.47333 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47149 * 299.99582 * 3 2 1 33 33 H 1.08999 * 109.47287 * 59.99674 * 3 2 1 34 34 H 1.09005 * 109.46778 * 305.00383 * 4 2 1 35 35 H 1.08991 * 109.47297 * 185.00864 * 4 2 1 36 36 H 1.09000 * 109.47365 * 299.99835 * 8 6 5 37 37 H 1.09008 * 109.47192 * 59.99759 * 8 6 5 38 38 H 1.08997 * 109.47526 * 179.97438 * 8 6 5 39 39 H 1.09000 * 113.85076 * 42.39173 * 12 11 9 40 40 H 1.09001 * 113.85367 * 270.72416 * 12 11 9 41 41 H 1.08995 * 113.85635 * 89.27448 * 14 11 9 42 42 H 1.09003 * 113.85124 * 317.60763 * 14 11 9 43 43 H 1.08999 * 110.75504 * 337.17811 * 15 13 12 44 44 H 1.08994 * 110.91686 * 213.87072 * 15 13 12 45 45 H 1.09005 * 109.86535 * 261.31083 * 16 15 13 46 46 H 1.08999 * 109.98373 * 140.26332 * 16 15 13 47 47 H 0.97006 * 119.99721 * 180.02562 * 21 20 18 48 48 H 1.09007 * 110.39933 * 96.33789 * 26 17 16 49 49 H 1.08995 * 110.40116 * 218.74649 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 8 1.6620 -2.0980 1.1922 6 6 2.0914 -2.8659 2.3182 7 1 2.1383 -2.2249 3.1985 8 6 3.4776 -3.4501 2.0385 9 6 1.1144 -3.9865 2.5642 10 8 0.1962 -4.1706 1.7935 11 7 1.2609 -4.7842 3.6406 12 6 0.5147 -5.9425 4.1781 13 6 1.8198 -6.3112 4.8728 14 6 2.2308 -4.8485 4.7553 15 6 1.6998 -6.8744 6.2974 16 6 1.7207 -8.4023 6.0625 17 7 2.3317 -8.6358 4.7445 18 6 2.5221 -9.8593 4.1598 19 1 2.9821 -9.9262 3.1850 20 6 2.1240 -11.0136 4.8201 21 7 1.5629 -10.9319 6.0080 22 14 2.3831 -12.6826 4.0222 23 1 3.7130 -13.2163 4.4117 24 1 1.3224 -13.6179 4.4754 25 1 2.3198 -12.5404 2.5454 26 6 2.7118 -7.3342 4.1581 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6441 1.2953 36 1 3.4309 -4.0911 1.1581 37 1 4.1844 -2.6395 1.8606 38 1 3.8054 -4.0354 2.8975 39 1 0.2032 -6.6577 3.4169 40 1 -0.2879 -5.6702 4.8635 41 1 1.9528 -4.2418 5.6171 42 1 3.2665 -4.7049 4.4471 43 1 0.7602 -6.5670 6.7564 44 1 2.5466 -6.5662 6.9103 45 1 0.7030 -8.7927 6.0734 46 1 2.3127 -8.8902 6.8368 47 1 1.2850 -11.7386 6.4696 48 1 3.7634 -7.1227 4.3521 49 1 2.5136 -7.3280 3.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147090628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:31 Heat of formation + Delta-G solvation = -26.696116 kcal Electronic energy + Delta-G solvation = -26560.567724 eV Core-core repulsion = 22910.667646 eV Total energy + Delta-G solvation = -3649.900078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.65061 -39.06843 -37.65409 -35.59790 -35.31670 -32.38133 -31.51004 -29.53830 -28.29027 -27.38694 -26.49723 -26.24163 -25.84874 -24.10798 -23.04041 -20.64385 -20.30221 -19.26319 -18.32817 -17.30479 -16.94137 -16.66679 -15.95504 -15.87003 -15.26677 -14.87184 -14.63031 -14.43442 -14.18952 -13.79431 -13.70738 -13.23062 -13.10157 -12.84371 -12.68001 -12.48670 -12.40720 -12.25078 -12.08799 -11.88394 -11.75675 -11.63836 -11.28206 -11.13206 -11.06608 -10.92977 -10.83090 -10.74938 -10.41600 -10.21469 -10.08748 -9.92358 -9.87133 -9.67655 -9.27860 -8.60453 -8.52323 -6.85026 -5.72176 -3.05597 2.62170 2.73032 3.40551 3.46115 3.47831 3.59018 4.34375 4.46536 4.55104 4.61219 4.65825 4.75245 4.84519 4.87024 5.00620 5.09949 5.17206 5.19820 5.30591 5.32344 5.40286 5.46202 5.50061 5.54773 5.59664 5.60449 5.67339 5.67522 5.70454 5.80377 5.88946 6.00393 6.01517 6.03180 6.15600 6.17894 6.21062 6.45442 6.49028 6.64988 6.69484 6.95421 7.54671 7.59157 7.81571 7.82494 8.24334 8.29309 9.21248 9.80891 10.45894 11.39467 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027800 B = 0.002639 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.964322 B =10605.608328 C =10906.772881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.064 3.936 5 O -0.355 6.355 6 C 0.079 3.921 7 H 0.081 0.919 8 C -0.172 4.172 9 C 0.534 3.466 10 O -0.526 6.526 11 N -0.640 5.640 12 C 0.132 3.868 13 C -0.103 4.103 14 C 0.109 3.891 15 C -0.131 4.131 16 C 0.178 3.822 17 N -0.604 5.604 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.162 3.838 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.047 0.953 46 H 0.044 0.956 47 H 0.252 0.748 48 H 0.024 0.976 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 22.989 -3.628 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.013 4.013 5 O -0.273 6.273 6 C 0.017 3.983 7 H 0.099 0.901 8 C -0.230 4.230 9 C 0.322 3.678 10 O -0.401 6.401 11 N -0.377 5.377 12 C 0.011 3.989 13 C -0.105 4.105 14 C -0.014 4.014 15 C -0.170 4.170 16 C 0.053 3.947 17 N -0.331 5.331 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.036 3.964 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.042 0.958 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.250 22.715 -4.357 23.238 hybrid contribution 0.322 -0.739 -0.025 0.807 sum 2.572 21.975 -4.382 22.555 Atomic orbital electron populations 1.21798 0.94390 1.02979 1.01179 1.21082 0.97000 0.95400 0.97808 1.21790 1.00983 0.95267 1.02231 1.22694 0.98419 0.81865 0.98337 1.88039 1.78310 1.19800 1.41177 1.21778 0.93498 0.92492 0.90494 0.90141 1.22281 0.94708 1.02064 1.03914 1.19982 0.85440 0.81887 0.80492 1.90713 1.33357 1.70471 1.45549 1.50172 1.31817 1.32550 1.23171 1.22961 0.95029 0.84896 0.96005 1.22465 0.96404 0.93349 0.98252 1.23217 0.94017 0.96140 0.88036 1.22670 1.00858 0.99938 0.93562 1.21213 0.98495 0.87420 0.87546 1.44549 1.70937 1.00277 1.17328 1.19042 1.33989 0.81985 1.00524 0.90488 1.24789 1.00919 0.97794 0.96903 1.69959 1.46265 1.26991 1.13762 0.86119 0.77293 0.83879 0.78489 1.21627 1.21675 1.20689 1.21040 0.94384 0.85288 0.95734 0.92864 0.91334 0.93048 0.90240 0.92547 0.91986 0.92541 0.93355 0.93244 0.90964 0.91494 0.90494 0.89506 0.89886 0.89525 0.89819 0.91749 0.91697 0.93515 0.93735 0.93766 0.95849 0.94129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.09 37.16 0.34 -1.04 16 2 C -0.09 -0.82 3.16 -90.62 -0.29 -1.11 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 4 C 0.06 0.60 5.13 37.16 0.19 0.79 16 5 O -0.36 -4.73 9.06 -55.09 -0.50 -5.23 16 6 C 0.08 0.96 2.91 -27.88 -0.08 0.88 16 7 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 8 C -0.17 -1.79 9.44 37.16 0.35 -1.44 16 9 C 0.53 8.60 7.41 -10.99 -0.08 8.52 16 10 O -0.53 -10.84 17.23 -14.30 -0.25 -11.09 16 11 N -0.64 -9.40 3.60 -186.88 -0.67 -10.08 16 12 C 0.13 2.13 8.14 -3.60 -0.03 2.10 16 13 C -0.10 -1.62 0.99 -154.84 -0.15 -1.77 16 14 C 0.11 1.28 7.64 -3.59 -0.03 1.26 16 15 C -0.13 -2.16 6.36 -25.55 -0.16 -2.32 16 16 C 0.18 4.08 5.39 -2.86 -0.02 4.06 16 17 N -0.60 -14.91 3.41 -170.50 -0.58 -15.49 16 18 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.66 10.30 55.49 0.57 -26.09 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.16 3.18 6.63 -3.16 -0.02 3.15 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.05 0.39 7.87 -51.93 -0.41 -0.02 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.55 7.87 -51.92 -0.41 0.14 16 38 H 0.08 0.74 5.59 -51.93 -0.29 0.45 16 39 H 0.09 1.62 8.12 -51.93 -0.42 1.20 16 40 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.85 5.99 -51.93 -0.31 0.54 16 43 H 0.06 0.94 7.99 -51.93 -0.41 0.53 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.05 1.20 7.40 -51.93 -0.38 0.82 16 46 H 0.04 1.14 7.47 -51.93 -0.39 0.75 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 48 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 49 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -33.16 387.40 -9.37 -42.53 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.87 Total: -3.25 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 0.11 Total: 5.78 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.68 Total: -51.66 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.75 Total: -16.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.16 -9.37 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147090628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.833 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds