Wall clock time and date at job start Fri Apr 10 2020 22:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46857 * 2 1 4 4 C 1.53003 * 109.47417 * 119.99526 * 2 1 3 5 5 O 1.42893 * 109.46986 * 64.99845 * 4 2 1 6 6 C 1.42901 * 114.00271 * 180.02562 * 5 4 2 7 7 H 1.08995 * 109.47041 * 29.99887 * 6 5 4 8 8 C 1.53004 * 109.47094 * 270.00486 * 6 5 4 9 9 C 1.50697 * 109.47567 * 150.00518 * 6 5 4 10 10 O 1.21283 * 119.99974 * 4.99919 * 9 6 5 11 11 N 1.34774 * 120.00345 * 185.00197 * 9 6 5 12 12 C 1.47889 * 134.34502 * 179.97438 * 11 9 6 13 13 C 1.52374 * 85.59061 * 156.55754 * 12 11 9 14 14 C 1.47894 * 134.33987 * 0.06152 * 11 9 6 15 15 C 1.53656 * 116.38986 * 141.35925 * 13 12 11 16 16 C 1.54597 * 102.73161 * 95.48609 * 15 13 12 17 17 N 1.47136 * 107.36670 * 20.75459 * 16 15 13 18 18 C 1.36938 * 125.58996 * 180.66450 * 17 16 15 19 19 H 1.08002 * 119.99889 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00054 * 0.02562 * 18 17 16 21 21 N 1.31624 * 119.99551 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46947 * 90.00409 * 22 20 18 24 24 H 1.48501 * 109.46857 * 210.00030 * 22 20 18 25 25 H 1.48501 * 109.46963 * 329.99874 * 22 20 18 26 26 C 1.47729 * 108.82430 * 0.92790 * 17 16 15 27 27 H 1.08998 * 109.47059 * 60.00713 * 1 2 3 28 28 H 1.08999 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47438 * 300.00233 * 1 2 3 30 30 H 1.08999 * 109.47438 * 239.99767 * 2 1 3 31 31 H 1.09002 * 109.47333 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.47149 * 299.99582 * 3 2 1 33 33 H 1.08999 * 109.47287 * 59.99674 * 3 2 1 34 34 H 1.09005 * 109.46778 * 305.00383 * 4 2 1 35 35 H 1.08991 * 109.47297 * 185.00864 * 4 2 1 36 36 H 1.09000 * 109.47365 * 299.99835 * 8 6 5 37 37 H 1.09008 * 109.47192 * 59.99759 * 8 6 5 38 38 H 1.08997 * 109.47526 * 179.97438 * 8 6 5 39 39 H 1.09000 * 113.85076 * 42.39173 * 12 11 9 40 40 H 1.09001 * 113.85367 * 270.72416 * 12 11 9 41 41 H 1.08995 * 113.85635 * 89.27448 * 14 11 9 42 42 H 1.09003 * 113.85124 * 317.60763 * 14 11 9 43 43 H 1.08999 * 110.75504 * 337.17811 * 15 13 12 44 44 H 1.08994 * 110.91686 * 213.87072 * 15 13 12 45 45 H 1.09005 * 109.86535 * 261.31083 * 16 15 13 46 46 H 1.08999 * 109.98373 * 140.26332 * 16 15 13 47 47 H 0.97006 * 119.99721 * 180.02562 * 21 20 18 48 48 H 1.09007 * 110.39933 * 96.33789 * 26 17 16 49 49 H 1.08995 * 110.40116 * 218.74649 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 8 1.6620 -2.0980 1.1922 6 6 2.0914 -2.8659 2.3182 7 1 2.1383 -2.2249 3.1985 8 6 3.4776 -3.4501 2.0385 9 6 1.1144 -3.9865 2.5642 10 8 0.1962 -4.1706 1.7935 11 7 1.2609 -4.7842 3.6406 12 6 0.5147 -5.9425 4.1781 13 6 1.8198 -6.3112 4.8728 14 6 2.2308 -4.8485 4.7553 15 6 1.6998 -6.8744 6.2974 16 6 1.7207 -8.4023 6.0625 17 7 2.3317 -8.6358 4.7445 18 6 2.5221 -9.8593 4.1598 19 1 2.9821 -9.9262 3.1850 20 6 2.1240 -11.0136 4.8201 21 7 1.5629 -10.9319 6.0080 22 14 2.3831 -12.6826 4.0222 23 1 3.7130 -13.2163 4.4117 24 1 1.3224 -13.6179 4.4754 25 1 2.3198 -12.5404 2.5454 26 6 2.7118 -7.3342 4.1581 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6054 -0.2616 2.1370 35 1 3.1263 -0.6441 1.2953 36 1 3.4309 -4.0911 1.1581 37 1 4.1844 -2.6395 1.8606 38 1 3.8054 -4.0354 2.8975 39 1 0.2032 -6.6577 3.4169 40 1 -0.2879 -5.6702 4.8635 41 1 1.9528 -4.2418 5.6171 42 1 3.2665 -4.7049 4.4471 43 1 0.7602 -6.5670 6.7564 44 1 2.5466 -6.5662 6.9103 45 1 0.7030 -8.7927 6.0734 46 1 2.3127 -8.8902 6.8368 47 1 1.2850 -11.7386 6.4696 48 1 3.7634 -7.1227 4.3521 49 1 2.5136 -7.3280 3.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147090628.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:30 Heat of formation + Delta-G solvation = -47.273941 kcal Electronic energy + Delta-G solvation = -26561.460046 eV Core-core repulsion = 22910.667646 eV Total energy + Delta-G solvation = -3650.792400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88566 -40.15174 -38.77595 -37.22253 -36.07682 -34.16375 -32.62749 -31.18923 -29.73002 -28.02449 -27.62936 -27.31877 -27.15031 -25.62735 -24.20386 -22.10395 -21.33951 -20.44083 -19.61996 -18.84015 -18.15880 -17.85042 -17.01465 -16.81096 -16.75599 -16.37949 -16.05877 -15.59839 -15.39835 -15.09217 -14.67007 -14.28588 -14.20535 -14.12590 -13.75212 -13.65456 -13.45460 -13.38556 -13.20179 -13.06113 -12.93192 -12.83997 -12.74870 -12.50687 -12.36948 -12.04108 -11.97787 -11.93529 -11.82036 -11.68614 -11.66502 -11.47944 -11.26367 -10.87630 -10.67996 -10.41898 -9.73063 -8.87112 -7.84841 -5.19062 1.44470 1.45956 1.53890 1.54409 1.55983 2.48572 2.73252 3.28937 3.34738 3.42372 3.65790 3.78590 3.86492 3.89573 4.02554 4.07490 4.13608 4.18934 4.20872 4.33859 4.44196 4.50623 4.63148 4.64760 4.66229 4.72133 4.74103 4.77893 4.80643 4.85745 4.86935 4.98988 5.00275 5.05434 5.08267 5.15462 5.22254 5.23803 5.26423 5.39834 5.42880 5.45787 5.74483 5.82912 6.17264 6.22353 6.68053 7.09624 7.12706 7.79483 8.42218 9.24811 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027800 B = 0.002639 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.964322 B =10605.608328 C =10906.772881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.139 4.139 4 C 0.058 3.942 5 O -0.389 6.389 6 C 0.084 3.916 7 H 0.117 0.883 8 C -0.166 4.166 9 C 0.524 3.476 10 O -0.587 6.587 11 N -0.638 5.638 12 C 0.123 3.877 13 C -0.097 4.097 14 C 0.129 3.871 15 C -0.110 4.110 16 C 0.182 3.818 17 N -0.628 5.628 18 C -0.241 4.241 19 H 0.075 0.925 20 C -0.064 4.064 21 N -0.947 5.947 22 Si 0.974 3.026 23 H -0.283 1.283 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.159 3.841 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.006 0.994 46 H 0.010 0.990 47 H 0.246 0.754 48 H 0.042 0.958 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 26.153 -2.676 26.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.018 4.018 5 O -0.308 6.308 6 C 0.023 3.977 7 H 0.134 0.866 8 C -0.224 4.224 9 C 0.314 3.686 10 O -0.467 6.467 11 N -0.374 5.374 12 C 0.001 3.999 13 C -0.098 4.098 14 C 0.008 3.992 15 C -0.149 4.149 16 C 0.057 3.943 17 N -0.354 5.354 18 C -0.370 4.370 19 H 0.093 0.907 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.802 3.198 23 H -0.210 1.210 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.034 3.966 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.148 0.852 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.024 0.976 46 H 0.028 0.972 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 4.218 25.916 -3.392 26.475 hybrid contribution -0.297 -1.741 -0.373 1.805 sum 3.921 24.175 -3.765 24.778 Atomic orbital electron populations 1.21770 0.95427 1.00908 1.02048 1.21131 0.96153 0.96937 0.97305 1.21742 1.01633 0.93336 1.02887 1.22929 0.99838 0.80089 0.98942 1.88026 1.79057 1.21748 1.41934 1.21849 0.92556 0.91548 0.91703 0.86564 1.22270 0.94177 1.02691 1.03250 1.20892 0.85399 0.82541 0.79726 1.90681 1.36081 1.72323 1.47571 1.50230 1.32037 1.31537 1.23605 1.22977 0.96152 0.85239 0.95517 1.22294 0.95612 0.95159 0.96781 1.23430 0.94881 0.92723 0.88156 1.22517 1.03520 0.94386 0.94447 1.21019 0.95237 0.92061 0.85999 1.44855 1.71032 1.01221 1.18311 1.19371 1.33313 0.83737 1.00570 0.90722 1.25573 1.01420 1.01093 0.97657 1.70174 1.47363 1.27222 1.14884 0.85151 0.77041 0.79753 0.77833 1.20979 1.22056 1.20009 1.21192 0.96066 0.84457 0.94908 0.91874 0.94769 0.92334 0.91461 0.91438 0.91518 0.91737 0.92191 0.91058 0.93584 0.88676 0.89259 0.93619 0.87740 0.85172 0.87152 0.89240 0.88773 0.97585 0.97203 0.94431 0.94030 0.96021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.09 71.98 0.65 -2.02 16 2 C -0.10 -1.54 3.16 -10.79 -0.03 -1.57 16 3 C -0.14 -1.38 9.19 71.98 0.66 -0.72 16 4 C 0.06 0.95 5.13 71.98 0.37 1.32 16 5 O -0.39 -9.90 9.06 -129.99 -1.18 -11.08 16 6 C 0.08 1.84 2.91 29.85 0.09 1.92 16 7 H 0.12 1.69 7.79 -2.39 -0.02 1.67 16 8 C -0.17 -2.94 9.44 71.98 0.68 -2.26 16 9 C 0.52 16.43 7.41 87.66 0.65 17.08 16 10 O -0.59 -25.06 17.23 15.95 0.27 -24.79 16 11 N -0.64 -17.44 3.60 -863.57 -3.11 -20.55 16 12 C 0.12 3.88 8.14 85.91 0.70 4.58 16 13 C -0.10 -2.82 0.99 -52.15 -0.05 -2.87 16 14 C 0.13 2.41 7.64 85.91 0.66 3.07 16 15 C -0.11 -3.33 6.36 31.36 0.20 -3.13 16 16 C 0.18 8.50 5.39 86.80 0.47 8.96 16 17 N -0.63 -31.63 3.41 -693.33 -2.36 -34.00 16 18 C -0.24 -13.64 10.28 84.03 0.86 -12.78 16 19 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.06 -3.70 5.49 84.86 0.47 -3.23 16 21 N -0.95 -56.87 10.30 21.65 0.22 -56.65 16 22 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 24 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 25 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 26 C 0.16 6.13 6.63 86.28 0.57 6.71 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.03 0.86 7.82 -2.39 -0.02 0.84 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.83 8.08 -2.38 -0.02 0.81 16 35 H 0.07 0.84 7.87 -2.39 -0.02 0.83 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.16 7.87 -2.38 -0.02 1.14 16 38 H 0.09 1.32 5.59 -2.39 -0.01 1.31 16 39 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 40 H 0.10 2.84 8.04 -2.39 -0.02 2.82 16 41 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.57 5.99 -2.39 -0.01 1.56 16 43 H 0.09 2.31 7.99 -2.39 -0.02 2.29 16 44 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.01 0.32 7.40 -2.38 -0.02 0.30 16 46 H 0.01 0.52 7.47 -2.39 -0.02 0.50 16 47 H 0.25 14.41 8.31 -92.70 -0.77 13.64 16 48 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 49 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 Total: -1.00 -79.42 387.40 3.72 -75.70 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 0.90 Total: 7.70 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 6.94 Total: 15.06 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -5.25 Total: -111.19 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.90 Total: -35.86 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -79.42 3.72 -75.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147090628.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.425 kcal (2) G-P(sol) polarization free energy of solvation -79.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds