Wall clock time and date at job start Fri Apr 10 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.52997 * 109.46954 * 119.99544 * 2 1 3 5 5 O 1.42898 * 109.47265 * 175.00132 * 4 2 1 6 6 C 1.42901 * 113.99976 * 179.97438 * 5 4 2 7 7 H 1.08990 * 109.47405 * 330.00266 * 6 5 4 8 8 C 1.53006 * 109.46829 * 90.00516 * 6 5 4 9 9 C 1.50700 * 109.46753 * 209.99877 * 6 5 4 10 10 O 1.21277 * 120.00488 * 355.00867 * 9 6 5 11 11 N 1.34783 * 119.99503 * 175.00351 * 9 6 5 12 12 C 1.47894 * 134.33829 * 180.02562 * 11 9 6 13 13 C 1.52379 * 85.58747 * 156.51272 * 12 11 9 14 14 C 1.47886 * 134.34573 * 359.97438 * 11 9 6 15 15 C 1.53649 * 116.38926 * 141.35766 * 13 12 11 16 16 C 1.54603 * 102.73243 * 95.48365 * 15 13 12 17 17 N 1.47133 * 107.36300 * 20.75480 * 16 15 13 18 18 C 1.36936 * 125.58815 * 180.92737 * 17 16 15 19 19 H 1.08005 * 120.00464 * 176.42613 * 18 17 16 20 20 C 1.38810 * 119.99933 * 356.43065 * 18 17 16 21 21 N 1.31623 * 120.00204 * 211.66449 * 20 18 17 22 22 Si 1.86801 * 120.00118 * 31.38476 * 20 18 17 23 23 H 1.48500 * 109.47019 * 275.60191 * 22 20 18 24 24 H 1.48504 * 109.47048 * 35.59968 * 22 20 18 25 25 H 1.48501 * 109.47135 * 155.59950 * 22 20 18 26 26 C 1.47724 * 108.82881 * 1.19055 * 17 16 15 27 27 H 1.08991 * 109.47467 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.46612 * 60.00667 * 1 2 3 29 29 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47068 * 239.99767 * 2 1 3 31 31 H 1.08998 * 109.46817 * 299.99951 * 3 2 1 32 32 H 1.09001 * 109.46878 * 59.99205 * 3 2 1 33 33 H 1.08993 * 109.47281 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47074 * 55.00148 * 4 2 1 35 35 H 1.08997 * 109.47441 * 295.00357 * 4 2 1 36 36 H 1.08998 * 109.47035 * 59.99703 * 8 6 5 37 37 H 1.09003 * 109.46908 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.46840 * 299.99850 * 8 6 5 39 39 H 1.08994 * 113.85668 * 42.34656 * 12 11 9 40 40 H 1.08994 * 113.96552 * 270.68755 * 12 11 9 41 41 H 1.08997 * 113.85088 * 89.31831 * 14 11 9 42 42 H 1.09006 * 113.85480 * 317.65620 * 14 11 9 43 43 H 1.09004 * 110.76177 * 337.17442 * 15 13 12 44 44 H 1.09004 * 110.76156 * 213.79473 * 15 13 12 45 45 H 1.08995 * 109.86627 * 261.30654 * 16 15 13 46 46 H 1.09003 * 109.98111 * 140.26024 * 16 15 13 47 47 H 0.96999 * 119.99534 * 354.69865 * 21 20 18 48 48 H 1.09008 * 110.40087 * 96.07042 * 26 17 16 49 49 H 1.08993 * 110.40221 * 218.48643 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 3.4642 -0.8237 1.1921 6 6 4.0450 -1.4844 2.3183 7 1 3.4251 -1.3149 3.1985 8 6 4.1338 -2.9861 2.0385 9 6 5.4272 -0.9366 2.5641 10 8 5.9067 -0.1323 1.7935 11 7 6.1305 -1.3406 3.6406 12 6 7.4712 -1.0231 4.1780 13 6 6.9097 -1.4720 5.5216 14 6 5.8682 -2.2770 4.7549 15 6 7.8605 -2.2707 6.4266 16 6 8.4450 -1.1801 7.3535 17 7 7.5192 -0.0369 7.3246 18 6 7.6869 1.1417 8.0012 19 1 6.9777 1.9456 7.8698 20 6 8.7686 1.3034 8.8560 21 7 8.6558 2.0651 9.9235 22 14 10.3820 0.4337 8.4956 23 1 10.3296 -0.9496 9.0333 24 1 10.6016 0.3862 7.0277 25 1 11.4975 1.1731 9.1393 26 6 6.3758 -0.3713 6.4510 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6054 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 4.7538 -3.1555 1.1582 37 1 4.5773 -3.4900 2.8973 38 1 3.1341 -3.3823 1.8606 39 1 7.7228 0.0366 4.1373 40 1 8.2649 -1.6648 3.7954 41 1 6.1694 -3.3038 4.5478 42 1 4.8618 -2.2011 5.1668 43 1 8.6488 -2.7414 5.8391 44 1 7.3109 -3.0143 7.0038 45 1 9.4255 -0.8720 6.9905 46 1 8.5300 -1.5622 8.3708 47 1 7.8436 2.5741 10.0724 48 1 5.5404 -0.7434 7.0443 49 1 6.0728 0.5005 5.8714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147090629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:36 Heat of formation + Delta-G solvation = -21.848245 kcal Electronic energy + Delta-G solvation = -26665.811208 eV Core-core repulsion = 23016.121349 eV Total energy + Delta-G solvation = -3649.689859 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.79905 -39.18469 -37.76417 -35.89575 -35.34513 -32.54368 -31.70038 -29.88138 -28.65132 -27.37826 -26.59971 -26.42839 -26.13259 -23.88976 -22.90184 -20.79788 -20.65408 -19.40104 -18.54040 -17.45433 -17.27795 -16.90397 -16.06847 -15.93871 -15.39798 -15.23716 -14.96825 -14.44274 -14.26636 -13.83445 -13.47384 -13.42192 -13.35512 -13.16131 -12.86600 -12.77814 -12.53750 -12.49917 -12.26621 -12.00092 -11.91848 -11.69563 -11.53491 -11.27800 -11.18306 -11.13999 -10.97049 -10.83484 -10.63993 -10.39543 -10.15898 -10.00483 -9.65604 -9.41126 -9.18005 -8.66036 -8.36141 -7.08907 -6.38399 -3.12879 2.50797 2.65839 3.40714 3.50586 3.50714 3.67782 4.25414 4.40866 4.54091 4.58617 4.59731 4.69582 4.70937 4.81779 4.86752 4.90152 5.08813 5.18659 5.21406 5.27725 5.29697 5.31782 5.32343 5.33852 5.40307 5.46975 5.48880 5.61596 5.67281 5.70901 5.74957 5.80355 5.82017 5.86669 5.95093 6.01729 6.07770 6.19320 6.21414 6.46141 6.48818 6.54877 6.77092 6.89934 7.68194 7.71121 8.19806 8.33392 9.04087 9.60446 10.26681 11.13004 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.002942 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.232405 B = 9513.720770 C =10073.613543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.147 4.147 4 C 0.063 3.937 5 O -0.355 6.355 6 C 0.077 3.923 7 H 0.084 0.916 8 C -0.168 4.168 9 C 0.535 3.465 10 O -0.523 6.523 11 N -0.640 5.640 12 C 0.130 3.870 13 C -0.109 4.109 14 C 0.114 3.886 15 C -0.113 4.113 16 C 0.106 3.894 17 N -0.609 5.609 18 C -0.338 4.338 19 H 0.078 0.922 20 C -0.018 4.018 21 N -0.912 5.912 22 Si 1.065 2.935 23 H -0.292 1.292 24 H -0.292 1.292 25 H -0.300 1.300 26 C 0.166 3.834 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.043 0.957 47 H 0.263 0.737 48 H 0.031 0.969 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.649 -13.028 -16.445 25.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.014 4.014 5 O -0.273 6.273 6 C 0.016 3.984 7 H 0.101 0.899 8 C -0.225 4.225 9 C 0.323 3.677 10 O -0.398 6.398 11 N -0.378 5.378 12 C 0.009 3.991 13 C -0.111 4.111 14 C -0.009 4.009 15 C -0.151 4.151 16 C -0.019 4.019 17 N -0.336 5.336 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.219 4.219 21 N -0.552 5.552 22 Si 0.899 3.101 23 H -0.220 1.220 24 H -0.221 1.221 25 H -0.228 1.228 26 C 0.040 3.960 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.884 -12.584 -16.564 23.958 hybrid contribution -1.691 0.126 -0.432 1.750 sum -13.576 -12.458 -16.996 25.067 Atomic orbital electron populations 1.21793 0.94309 1.01868 1.02340 1.21077 0.95300 0.97174 0.97642 1.21806 1.02527 0.94781 1.01317 1.22718 0.80982 0.99118 0.98559 1.88029 1.19784 1.78533 1.40994 1.21771 0.92932 0.92934 0.90797 0.89860 1.22209 1.03260 0.93709 1.03360 1.19993 0.86675 0.81769 0.79243 1.90719 1.70849 1.33612 1.44653 1.50134 1.18587 1.44889 1.24159 1.22963 0.84643 1.02692 0.88833 1.22615 0.96366 0.97803 0.94309 1.23095 1.00323 0.93971 0.83556 1.22335 0.98065 0.97483 0.97266 1.21822 0.94146 0.88199 0.97732 1.44844 1.20341 1.13468 1.54991 1.19934 1.11594 0.92344 1.22594 0.90458 1.25654 1.01877 1.01997 0.92422 1.70925 1.32439 1.31851 1.19986 0.83861 0.76631 0.74982 0.74627 1.21979 1.22058 1.22814 1.21092 0.91079 0.93834 0.90024 0.92434 0.91966 0.92586 0.90348 0.92849 0.92898 0.91363 0.93271 0.93132 0.91221 0.90885 0.91346 0.89448 0.89704 0.89306 0.89821 0.90977 0.90606 0.94738 0.93896 0.92614 0.95088 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.19 37.16 0.34 -0.61 16 2 C -0.09 -0.82 3.16 -90.62 -0.29 -1.11 16 3 C -0.15 -1.46 9.09 37.16 0.34 -1.12 16 4 C 0.06 0.60 5.13 37.16 0.19 0.79 16 5 O -0.36 -4.63 9.06 -55.09 -0.50 -5.13 16 6 C 0.08 0.90 2.91 -27.88 -0.08 0.82 16 7 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 8 C -0.17 -1.47 9.44 37.16 0.35 -1.12 16 9 C 0.54 8.31 7.41 -10.98 -0.08 8.23 16 10 O -0.52 -10.54 17.23 -14.30 -0.25 -10.78 16 11 N -0.64 -8.91 3.60 -186.90 -0.67 -9.58 16 12 C 0.13 1.96 8.16 -3.59 -0.03 1.93 16 13 C -0.11 -1.59 0.99 -154.74 -0.15 -1.75 16 14 C 0.11 1.22 6.62 -3.62 -0.02 1.20 16 15 C -0.11 -1.64 6.36 -25.55 -0.16 -1.81 16 16 C 0.11 2.19 4.86 -2.85 -0.01 2.17 16 17 N -0.61 -14.55 3.39 -170.36 -0.58 -15.13 16 18 C -0.34 -9.62 10.42 -15.06 -0.16 -9.78 16 19 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 20 C -0.02 -0.54 5.44 -17.43 -0.09 -0.63 16 21 N -0.91 -28.44 13.70 55.49 0.76 -27.68 16 22 Si 1.07 26.48 24.65 -169.99 -4.19 22.29 16 23 H -0.29 -6.76 6.40 56.52 0.36 -6.40 16 24 H -0.29 -6.91 6.41 56.52 0.36 -6.55 16 25 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 26 C 0.17 3.18 6.65 -3.04 -0.02 3.15 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.85 7.82 -51.93 -0.41 0.44 16 34 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.05 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.54 6.62 -51.93 -0.34 0.19 16 38 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 39 H 0.09 1.56 8.13 -51.93 -0.42 1.13 16 40 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 41 H 0.09 0.72 8.02 -51.93 -0.42 0.31 16 42 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 43 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 44 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.04 0.76 4.26 -51.93 -0.22 0.54 16 46 H 0.04 0.94 6.87 -51.93 -0.36 0.59 16 47 H 0.26 8.13 8.73 -40.82 -0.36 7.78 16 48 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 49 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -35.01 383.00 -8.48 -43.49 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.94 Total: -3.62 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 0.12 Total: 0.38 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.49 Total: -52.39 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.75 Total: -15.91 kcal Atomic # 14 Polarization: 26.48 SS G_CDS: -4.19 Total: 22.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.01 -8.48 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147090629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.637 kcal (2) G-P(sol) polarization free energy of solvation -35.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds