Wall clock time and date at job start Fri Apr 10 2020 22:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47017 * 2 1 4 4 C 1.52997 * 109.46954 * 119.99544 * 2 1 3 5 5 O 1.42898 * 109.47265 * 175.00132 * 4 2 1 6 6 C 1.42901 * 113.99976 * 179.97438 * 5 4 2 7 7 H 1.08990 * 109.47405 * 330.00266 * 6 5 4 8 8 C 1.53006 * 109.46829 * 90.00516 * 6 5 4 9 9 C 1.50700 * 109.46753 * 209.99877 * 6 5 4 10 10 O 1.21277 * 120.00488 * 355.00867 * 9 6 5 11 11 N 1.34783 * 119.99503 * 175.00351 * 9 6 5 12 12 C 1.47894 * 134.33829 * 180.02562 * 11 9 6 13 13 C 1.52379 * 85.58747 * 156.51272 * 12 11 9 14 14 C 1.47886 * 134.34573 * 359.97438 * 11 9 6 15 15 C 1.53649 * 116.38926 * 141.35766 * 13 12 11 16 16 C 1.54603 * 102.73243 * 95.48365 * 15 13 12 17 17 N 1.47133 * 107.36300 * 20.75480 * 16 15 13 18 18 C 1.36936 * 125.58815 * 180.92737 * 17 16 15 19 19 H 1.08005 * 120.00464 * 176.42613 * 18 17 16 20 20 C 1.38810 * 119.99933 * 356.43065 * 18 17 16 21 21 N 1.31623 * 120.00204 * 211.66449 * 20 18 17 22 22 Si 1.86801 * 120.00118 * 31.38476 * 20 18 17 23 23 H 1.48500 * 109.47019 * 275.60191 * 22 20 18 24 24 H 1.48504 * 109.47048 * 35.59968 * 22 20 18 25 25 H 1.48501 * 109.47135 * 155.59950 * 22 20 18 26 26 C 1.47724 * 108.82881 * 1.19055 * 17 16 15 27 27 H 1.08991 * 109.47467 * 300.00172 * 1 2 3 28 28 H 1.08998 * 109.46612 * 60.00667 * 1 2 3 29 29 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47068 * 239.99767 * 2 1 3 31 31 H 1.08998 * 109.46817 * 299.99951 * 3 2 1 32 32 H 1.09001 * 109.46878 * 59.99205 * 3 2 1 33 33 H 1.08993 * 109.47281 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47074 * 55.00148 * 4 2 1 35 35 H 1.08997 * 109.47441 * 295.00357 * 4 2 1 36 36 H 1.08998 * 109.47035 * 59.99703 * 8 6 5 37 37 H 1.09003 * 109.46908 * 179.97438 * 8 6 5 38 38 H 1.09002 * 109.46840 * 299.99850 * 8 6 5 39 39 H 1.08994 * 113.85668 * 42.34656 * 12 11 9 40 40 H 1.08994 * 113.96552 * 270.68755 * 12 11 9 41 41 H 1.08997 * 113.85088 * 89.31831 * 14 11 9 42 42 H 1.09006 * 113.85480 * 317.65620 * 14 11 9 43 43 H 1.09004 * 110.76177 * 337.17442 * 15 13 12 44 44 H 1.09004 * 110.76156 * 213.79473 * 15 13 12 45 45 H 1.08995 * 109.86627 * 261.30654 * 16 15 13 46 46 H 1.09003 * 109.98111 * 140.26024 * 16 15 13 47 47 H 0.96999 * 119.99534 * 354.69865 * 21 20 18 48 48 H 1.09008 * 110.40087 * 96.07042 * 26 17 16 49 49 H 1.08993 * 110.40221 * 218.48643 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 3.4642 -0.8237 1.1921 6 6 4.0450 -1.4844 2.3183 7 1 3.4251 -1.3149 3.1985 8 6 4.1338 -2.9861 2.0385 9 6 5.4272 -0.9366 2.5641 10 8 5.9067 -0.1323 1.7935 11 7 6.1305 -1.3406 3.6406 12 6 7.4712 -1.0231 4.1780 13 6 6.9097 -1.4720 5.5216 14 6 5.8682 -2.2770 4.7549 15 6 7.8605 -2.2707 6.4266 16 6 8.4450 -1.1801 7.3535 17 7 7.5192 -0.0369 7.3246 18 6 7.6869 1.1417 8.0012 19 1 6.9777 1.9456 7.8698 20 6 8.7686 1.3034 8.8560 21 7 8.6558 2.0651 9.9235 22 14 10.3820 0.4337 8.4956 23 1 10.3296 -0.9496 9.0333 24 1 10.6016 0.3862 7.0277 25 1 11.4975 1.1731 9.1393 26 6 6.3758 -0.3713 6.4510 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6054 -1.7197 1.2952 35 1 1.7516 -0.1582 2.1370 36 1 4.7538 -3.1555 1.1582 37 1 4.5773 -3.4900 2.8973 38 1 3.1341 -3.3823 1.8606 39 1 7.7228 0.0366 4.1373 40 1 8.2649 -1.6648 3.7954 41 1 6.1694 -3.3038 4.5478 42 1 4.8618 -2.2011 5.1668 43 1 8.6488 -2.7414 5.8391 44 1 7.3109 -3.0143 7.0038 45 1 9.4255 -0.8720 6.9905 46 1 8.5300 -1.5622 8.3708 47 1 7.8436 2.5741 10.0724 48 1 5.5404 -0.7434 7.0443 49 1 6.0728 0.5005 5.8714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147090629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:35 Heat of formation + Delta-G solvation = -46.072138 kcal Electronic energy + Delta-G solvation = -26666.861635 eV Core-core repulsion = 23016.121349 eV Total energy + Delta-G solvation = -3650.740285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95336 -40.23563 -38.84605 -37.42906 -36.10877 -34.47426 -32.76785 -31.39471 -30.01158 -28.07103 -27.85379 -27.35467 -27.17611 -25.25577 -24.11983 -22.60791 -21.37907 -20.54925 -19.81552 -19.30644 -18.29906 -17.91997 -17.12453 -16.92493 -16.83969 -16.45006 -16.31798 -15.46591 -15.32151 -15.24737 -15.04526 -14.77886 -14.28489 -14.24232 -14.05353 -13.63434 -13.47360 -13.30885 -13.27067 -13.08550 -13.02101 -12.93510 -12.89603 -12.71288 -12.48188 -12.01768 -11.90845 -11.88148 -11.84223 -11.81999 -11.54005 -11.45326 -11.04473 -10.90524 -10.53571 -10.43865 -9.78616 -9.11715 -8.71653 -5.36403 1.39271 1.48941 1.52907 1.54800 1.70771 2.51915 2.68424 2.97934 3.21548 3.31710 3.51993 3.61119 3.83795 3.85655 3.93624 3.99103 4.03734 4.06699 4.16779 4.32503 4.40544 4.43015 4.53973 4.58668 4.59667 4.65455 4.67895 4.71386 4.74613 4.77397 4.80009 4.85321 4.91007 4.94983 5.00585 5.01795 5.05422 5.16745 5.19383 5.20833 5.32433 5.36829 5.38405 5.56935 6.09410 6.12628 6.63400 6.84651 7.06303 7.50273 8.15118 8.81381 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.002942 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.232405 B = 9513.720770 C =10073.613543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.058 3.942 5 O -0.388 6.388 6 C 0.079 3.921 7 H 0.104 0.896 8 C -0.159 4.159 9 C 0.524 3.476 10 O -0.587 6.587 11 N -0.641 5.641 12 C 0.120 3.880 13 C -0.102 4.102 14 C 0.132 3.868 15 C -0.095 4.095 16 C 0.092 3.908 17 N -0.633 5.633 18 C -0.330 4.330 19 H 0.038 0.962 20 C -0.077 4.077 21 N -0.948 5.948 22 Si 1.110 2.890 23 H -0.259 1.259 24 H -0.277 1.277 25 H -0.310 1.310 26 C 0.161 3.839 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.043 0.957 40 H 0.115 0.885 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.027 0.973 46 H 0.032 0.968 47 H 0.248 0.752 48 H 0.044 0.956 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 -17.835 -17.470 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.018 4.018 5 O -0.307 6.307 6 C 0.018 3.982 7 H 0.121 0.879 8 C -0.216 4.216 9 C 0.314 3.686 10 O -0.467 6.467 11 N -0.377 5.377 12 C -0.002 4.002 13 C -0.104 4.104 14 C 0.011 3.989 15 C -0.133 4.133 16 C -0.032 4.032 17 N -0.360 5.360 18 C -0.458 4.458 19 H 0.056 0.944 20 C -0.272 4.272 21 N -0.591 5.591 22 Si 0.938 3.062 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.239 1.239 26 C 0.036 3.964 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.062 0.938 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.126 0.874 45 H 0.044 0.956 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.062 0.938 49 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -13.034 -17.459 -17.589 28.001 hybrid contribution -1.445 1.761 -0.120 2.281 sum -14.479 -15.698 -17.710 27.744 Atomic orbital electron populations 1.21750 0.92200 1.02968 1.02766 1.21120 0.96939 0.95837 0.97377 1.21785 1.00289 0.96362 1.01888 1.22918 0.79478 1.00656 0.98740 1.88009 1.21720 1.79199 1.41763 1.21909 0.90475 0.94458 0.91346 0.87880 1.22196 1.04645 0.91135 1.03653 1.20877 0.88089 0.80887 0.78700 1.90683 1.72468 1.36467 1.47054 1.50238 1.18051 1.45136 1.24231 1.23050 0.86356 1.00865 0.89899 1.22402 0.97878 0.96835 0.93243 1.23376 1.00358 0.94851 0.80338 1.22361 0.98900 0.95792 0.96212 1.22054 0.93672 0.88729 0.98790 1.44944 1.22644 1.12929 1.55521 1.19808 1.10180 0.93387 1.22448 0.94380 1.27012 1.05103 1.02978 0.92074 1.71048 1.31919 1.33974 1.22168 0.83291 0.72043 0.75569 0.75344 1.18475 1.20346 1.23916 1.21229 0.90272 0.94660 0.90271 0.92224 0.91366 0.91128 0.90805 0.91646 0.92979 0.94729 0.90636 0.93124 0.92670 0.88662 0.89028 0.93843 0.86742 0.84401 0.87508 0.87304 0.87388 0.95572 0.95044 0.94300 0.93850 0.96814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 71.98 0.66 -0.86 16 2 C -0.09 -1.56 3.16 -10.79 -0.03 -1.60 16 3 C -0.15 -2.96 9.09 71.98 0.65 -2.31 16 4 C 0.06 1.01 5.13 71.98 0.37 1.38 16 5 O -0.39 -9.85 9.06 -129.99 -1.18 -11.03 16 6 C 0.08 1.68 2.91 29.85 0.09 1.76 16 7 H 0.10 1.73 7.79 -2.39 -0.02 1.71 16 8 C -0.16 -2.13 9.44 71.98 0.68 -1.45 16 9 C 0.52 15.90 7.41 87.66 0.65 16.55 16 10 O -0.59 -24.59 17.23 15.97 0.28 -24.32 16 11 N -0.64 -16.28 3.60 -863.62 -3.11 -19.39 16 12 C 0.12 3.41 8.16 85.91 0.70 4.11 16 13 C -0.10 -2.62 0.99 -52.09 -0.05 -2.67 16 14 C 0.13 2.10 6.62 85.89 0.57 2.67 16 15 C -0.09 -2.25 6.36 31.36 0.20 -2.05 16 16 C 0.09 3.56 4.86 86.80 0.42 3.98 16 17 N -0.63 -30.32 3.39 -692.89 -2.35 -32.66 16 18 C -0.33 -19.58 10.42 84.03 0.88 -18.70 16 19 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 20 C -0.08 -4.67 5.44 84.86 0.46 -4.21 16 21 N -0.95 -61.70 13.70 21.65 0.30 -61.40 16 22 Si 1.11 53.84 24.65 68.60 1.69 55.53 16 23 H -0.26 -11.12 6.40 99.48 0.64 -10.49 16 24 H -0.28 -12.50 6.41 99.48 0.64 -11.87 16 25 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 26 C 0.16 6.05 6.65 86.36 0.57 6.63 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.03 0.92 7.82 -2.39 -0.02 0.90 16 34 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 35 H 0.05 0.86 8.08 -2.39 -0.02 0.84 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.83 6.62 -2.39 -0.02 0.81 16 38 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 39 H 0.04 1.60 8.13 -2.39 -0.02 1.58 16 40 H 0.11 2.58 8.04 -2.39 -0.02 2.56 16 41 H 0.14 1.06 8.02 -2.39 -0.02 1.05 16 42 H 0.11 1.31 8.12 -2.38 -0.02 1.30 16 43 H 0.11 1.89 7.99 -2.38 -0.02 1.88 16 44 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.03 1.08 4.26 -2.39 -0.01 1.07 16 46 H 0.03 1.30 6.87 -2.39 -0.02 1.28 16 47 H 0.25 16.25 8.73 -92.71 -0.81 15.44 16 48 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.01 0.58 8.08 -2.39 -0.02 0.56 16 Total: -1.00 -85.63 383.00 3.17 -82.46 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.72 Total: 7.60 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 6.82 Total: 3.22 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -5.16 Total: -113.45 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.90 Total: -35.35 kcal Atomic # 14 Polarization: 53.84 SS G_CDS: 1.69 Total: 55.53 kcal Total: -85.63 3.17 -82.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147090629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.385 kcal (2) G-P(sol) polarization free energy of solvation -85.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds