Wall clock time and date at job start Fri Apr 10 2020 22:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 120.00182 * 2 1 4 4 C 1.50703 * 119.99707 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46674 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46852 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47063 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99979 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99893 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63021 * 355.00715 * 9 7 6 11 11 C 1.53191 * 108.77358 * 233.58612 * 10 9 7 12 12 C 1.53037 * 109.31402 * 305.36345 * 11 10 9 13 13 C 1.53047 * 109.53324 * 61.37061 * 12 11 10 14 14 C 1.46927 * 120.62888 * 174.73252 * 9 7 6 15 15 H 1.09003 * 109.58267 * 246.19910 * 14 9 7 16 16 C 1.53005 * 109.58753 * 6.62417 * 14 9 7 17 17 N 1.46491 * 109.47105 * 181.24725 * 16 14 9 18 18 C 1.46507 * 120.00184 * 84.90703 * 17 16 14 19 19 C 1.36938 * 120.00534 * 264.90637 * 17 16 14 20 20 H 1.08001 * 119.99329 * 10.86407 * 19 17 16 21 21 C 1.38805 * 120.00412 * 190.86182 * 19 17 16 22 22 N 1.31623 * 120.00233 * 12.45660 * 21 19 17 23 23 Si 1.86800 * 120.00013 * 192.44923 * 21 19 17 24 24 H 1.48506 * 109.47002 * 90.00418 * 23 21 19 25 25 H 1.48504 * 109.47041 * 210.00271 * 23 21 19 26 26 H 1.48504 * 109.47164 * 330.00269 * 23 21 19 27 27 H 1.08995 * 109.47453 * 240.00108 * 1 2 3 28 28 H 1.08999 * 109.47190 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47139 * 120.00209 * 1 2 3 30 30 H 1.08996 * 109.46962 * 60.00465 * 4 2 1 31 31 H 1.08993 * 109.47017 * 299.99791 * 4 2 1 32 32 H 1.08996 * 109.47117 * 60.00473 * 5 4 2 33 33 H 1.08993 * 109.47156 * 299.99618 * 5 4 2 34 34 H 1.09007 * 109.47072 * 59.99972 * 6 5 4 35 35 H 1.09002 * 109.47145 * 300.00007 * 6 5 4 36 36 H 1.09000 * 109.58623 * 353.37606 * 10 9 7 37 37 H 1.09003 * 109.58373 * 113.65549 * 10 9 7 38 38 H 1.08997 * 109.49699 * 65.32393 * 11 10 9 39 39 H 1.09008 * 109.49047 * 185.41376 * 11 10 9 40 40 H 1.09001 * 109.45572 * 181.38528 * 12 11 10 41 41 H 1.08993 * 109.46542 * 301.36190 * 12 11 10 42 42 H 1.08994 * 109.49995 * 58.58403 * 13 12 11 43 43 H 1.09005 * 109.49237 * 178.64819 * 13 12 11 44 44 H 1.09008 * 109.46847 * 301.24641 * 16 14 9 45 45 H 1.08997 * 109.46857 * 61.24503 * 16 14 9 46 46 H 1.09006 * 109.46881 * 354.89129 * 18 17 16 47 47 H 1.09000 * 109.47160 * 114.88739 * 18 17 16 48 48 H 1.09003 * 109.47549 * 234.89519 * 18 17 16 49 49 H 0.96995 * 119.99833 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5297 -2.3506 0.0023 7 6 6.0113 -2.0752 0.0022 8 8 6.4156 -0.9318 0.0008 9 7 6.8871 -3.0997 0.0027 10 6 6.4163 -4.4871 0.1133 11 6 7.1490 -5.1652 1.2752 12 6 8.6594 -5.0286 1.0697 13 6 9.0421 -3.5468 1.0564 14 6 8.3305 -2.8507 -0.1135 15 1 8.6957 -3.2529 -1.0585 16 6 8.5975 -1.3452 -0.0561 17 7 10.0340 -1.0981 -0.2020 18 6 10.6308 -1.0128 -1.5373 19 6 10.8193 -0.9469 0.9097 20 1 10.4229 -1.1813 1.8866 21 6 12.1245 -0.4925 0.7809 22 7 12.5324 0.0233 -0.3593 23 14 13.3021 -0.6128 2.2259 24 1 14.0141 -1.9151 2.1772 25 1 14.2895 0.4941 2.1533 26 1 12.5391 -0.5129 3.4960 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.9971 -1.8770 -0.8892 31 1 1.9971 -1.8763 0.8908 32 1 4.0277 -0.4538 0.8911 33 1 4.0284 -0.4543 -0.8889 34 1 4.2668 -2.9228 -0.8874 35 1 4.2659 -2.9216 0.8926 36 1 5.3431 -4.4946 0.3039 37 1 6.6263 -5.0193 -0.8145 38 1 6.8647 -4.6878 2.2128 39 1 6.8803 -6.2212 1.3079 40 1 9.1833 -5.5317 1.8824 41 1 8.9394 -5.4843 0.1200 42 1 8.7400 -3.0846 1.9962 43 1 10.1210 -3.4509 0.9341 44 1 8.0596 -0.8497 -0.8645 45 1 8.2566 -0.9520 0.9017 46 1 9.8760 -1.2467 -2.2882 47 1 11.0076 -0.0035 -1.7031 48 1 11.4526 -1.7247 -1.6143 49 1 13.4443 0.3412 -0.4491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157534412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:15 Heat of formation + Delta-G solvation = -46.262329 kcal Electronic energy + Delta-G solvation = -26909.399476 eV Core-core repulsion = 23258.650944 eV Total energy + Delta-G solvation = -3650.748533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.28628 -39.59775 -37.21653 -35.47116 -34.37935 -32.60500 -31.98004 -30.90485 -29.97300 -28.18014 -26.17952 -25.74152 -24.33302 -23.05577 -21.94368 -20.50245 -20.20317 -19.79035 -18.58051 -16.82413 -16.38454 -16.25417 -16.00807 -15.47465 -15.28366 -15.04738 -14.55007 -14.32988 -14.13109 -13.90398 -13.46218 -13.18708 -13.10846 -12.88792 -12.78122 -12.57862 -12.41388 -12.24172 -11.98973 -11.88417 -11.61383 -11.47664 -11.09336 -10.95597 -10.85582 -10.73002 -10.63061 -10.50198 -10.35343 -10.21483 -9.99483 -9.85321 -9.76956 -9.62107 -8.75666 -8.42397 -8.12193 -6.66782 -5.47065 -2.93861 1.76347 2.94503 3.23264 3.46692 3.52486 3.54324 3.81984 4.51897 4.63525 4.71020 4.78585 4.82666 4.90854 4.98447 4.99635 5.04259 5.15522 5.25255 5.30643 5.38589 5.41331 5.44553 5.55047 5.58154 5.62383 5.75442 5.80799 5.94433 5.98909 6.02762 6.05184 6.17377 6.22667 6.30295 6.50531 6.56794 6.78238 6.90798 7.00999 7.08139 7.31957 7.39800 7.62209 7.77969 7.90550 8.07640 8.51481 8.61859 9.42423 10.08486 10.52647 11.49833 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003395 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.281079 B = 8244.425188 C = 9379.095723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.347 3.653 3 O -0.449 6.449 4 C -0.172 4.172 5 C -0.098 4.098 6 C -0.139 4.139 7 C 0.504 3.496 8 O -0.519 6.519 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.133 4.133 12 C -0.122 4.122 13 C -0.120 4.120 14 C 0.123 3.877 15 H 0.060 0.940 16 C 0.167 3.833 17 N -0.608 5.608 18 C 0.158 3.842 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.915 5.915 23 Si 0.902 3.098 24 H -0.291 1.291 25 H -0.293 1.293 26 H -0.282 1.282 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.058 0.942 46 H -0.007 1.007 47 H 0.064 0.936 48 H 0.017 0.983 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.202 -12.364 0.056 26.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.222 3.778 3 O -0.322 6.322 4 C -0.209 4.209 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.292 3.708 8 O -0.394 6.394 9 N -0.344 5.344 10 C -0.015 4.015 11 C -0.171 4.171 12 C -0.159 4.159 13 C -0.158 4.158 14 C 0.018 3.982 15 H 0.078 0.922 16 C 0.039 3.961 17 N -0.332 5.332 18 C 0.013 3.987 19 C -0.365 4.365 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.563 5.563 23 Si 0.733 3.267 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.207 1.207 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.012 0.988 47 H 0.082 0.918 48 H 0.035 0.965 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.484 -11.077 0.010 25.064 hybrid contribution 0.669 -0.589 0.783 1.186 sum -21.814 -11.666 0.793 24.750 Atomic orbital electron populations 1.22334 0.94719 1.04869 1.04340 1.24646 0.91834 0.90536 0.70764 1.90476 1.71938 1.35128 1.34685 1.22159 0.96889 0.97436 1.04464 1.21168 0.91244 0.96161 1.05055 1.21734 0.92973 0.99642 1.03603 1.20584 0.88179 0.85232 0.76849 1.90833 1.78675 1.21442 1.48462 1.48406 1.07673 1.05587 1.72699 1.21671 0.98506 0.82712 0.98636 1.21903 0.96749 0.99918 0.98548 1.21574 0.94720 0.98166 1.01460 1.21961 1.02605 0.92921 0.98296 1.22574 0.76584 1.01641 0.97378 0.92175 1.21372 0.83940 0.89165 1.01594 1.44305 1.02955 1.82688 1.03252 1.21059 0.92743 1.02017 0.82864 1.19292 0.93461 1.36623 0.87162 0.91086 1.24845 0.98270 1.00523 0.96928 1.70113 1.16777 1.45309 1.24081 0.86268 0.81267 0.77097 0.82098 1.21839 1.21937 1.20742 0.89119 0.90173 0.89119 0.88476 0.88493 0.90514 0.90504 0.89360 0.89371 0.90353 0.91795 0.91728 0.91432 0.92240 0.92293 0.92420 0.88940 0.92247 0.92403 0.98831 0.91807 0.96452 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.06 10.26 36.00 0.37 -0.69 16 2 C 0.35 3.09 7.27 -29.03 -0.21 2.88 16 3 O -0.45 -6.34 16.71 6.00 0.10 -6.24 16 4 C -0.17 -1.19 5.64 -27.88 -0.16 -1.34 16 5 C -0.10 -1.10 3.79 -26.73 -0.10 -1.20 16 6 C -0.14 -1.39 4.10 -27.88 -0.11 -1.51 16 7 C 0.50 7.80 7.61 -10.98 -0.08 7.72 16 8 O -0.52 -10.51 11.39 5.56 0.06 -10.45 16 9 N -0.61 -9.05 2.97 -164.97 -0.49 -9.54 16 10 C 0.11 1.12 6.33 -3.71 -0.02 1.10 16 11 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 12 C -0.12 -1.62 5.88 -26.69 -0.16 -1.78 16 13 C -0.12 -2.13 4.69 -26.39 -0.12 -2.25 16 14 C 0.12 2.29 3.20 -67.38 -0.22 2.08 16 15 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 16 C 0.17 3.87 3.51 -4.04 -0.01 3.85 16 17 N -0.61 -16.24 2.68 -181.11 -0.49 -16.72 16 18 C 0.16 4.19 9.04 59.85 0.54 4.73 16 19 C -0.24 -6.71 8.24 -15.06 -0.12 -6.83 16 20 H 0.07 1.98 7.78 -52.49 -0.41 1.58 16 21 C -0.01 -0.28 5.32 -17.43 -0.09 -0.37 16 22 N -0.91 -27.77 9.96 55.49 0.55 -27.22 16 23 Si 0.90 22.76 29.57 -169.99 -5.03 17.74 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.05 8.06 -51.93 -0.42 0.63 16 33 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 34 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.09 0.68 7.48 -51.93 -0.39 0.29 16 36 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.94 7.00 -51.93 -0.36 1.57 16 44 H 0.06 1.46 6.27 -51.92 -0.33 1.13 16 45 H 0.06 1.46 6.99 -51.93 -0.36 1.09 16 46 H -0.01 -0.17 7.90 -51.93 -0.41 -0.58 16 47 H 0.06 1.87 6.43 -51.93 -0.33 1.54 16 48 H 0.02 0.47 7.81 -51.93 -0.41 0.07 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -35.40 379.37 -9.01 -44.41 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.77 Total: -2.51 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -0.67 Total: 4.82 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.42 Total: -53.48 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: 0.16 Total: -16.69 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.40 -9.01 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157534412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.853 kcal (2) G-P(sol) polarization free energy of solvation -35.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds