Wall clock time and date at job start Fri Apr 10 2020 22:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20759 * 120.00182 * 2 1 4 4 C 1.50703 * 119.99707 * 179.97438 * 2 1 3 5 5 C 1.53007 * 109.46674 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46852 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47063 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99979 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99893 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63021 * 355.00715 * 9 7 6 11 11 C 1.53191 * 108.77358 * 233.58612 * 10 9 7 12 12 C 1.53037 * 109.31402 * 305.36345 * 11 10 9 13 13 C 1.53047 * 109.53324 * 61.37061 * 12 11 10 14 14 C 1.46927 * 120.62888 * 174.73252 * 9 7 6 15 15 H 1.09003 * 109.58267 * 246.19910 * 14 9 7 16 16 C 1.53005 * 109.58753 * 6.62417 * 14 9 7 17 17 N 1.46491 * 109.47105 * 181.24725 * 16 14 9 18 18 C 1.46507 * 120.00184 * 84.90703 * 17 16 14 19 19 C 1.36938 * 120.00534 * 264.90637 * 17 16 14 20 20 H 1.08001 * 119.99329 * 10.86407 * 19 17 16 21 21 C 1.38805 * 120.00412 * 190.86182 * 19 17 16 22 22 N 1.31623 * 120.00233 * 12.45660 * 21 19 17 23 23 Si 1.86800 * 120.00013 * 192.44923 * 21 19 17 24 24 H 1.48506 * 109.47002 * 90.00418 * 23 21 19 25 25 H 1.48504 * 109.47041 * 210.00271 * 23 21 19 26 26 H 1.48504 * 109.47164 * 330.00269 * 23 21 19 27 27 H 1.08995 * 109.47453 * 240.00108 * 1 2 3 28 28 H 1.08999 * 109.47190 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47139 * 120.00209 * 1 2 3 30 30 H 1.08996 * 109.46962 * 60.00465 * 4 2 1 31 31 H 1.08993 * 109.47017 * 299.99791 * 4 2 1 32 32 H 1.08996 * 109.47117 * 60.00473 * 5 4 2 33 33 H 1.08993 * 109.47156 * 299.99618 * 5 4 2 34 34 H 1.09007 * 109.47072 * 59.99972 * 6 5 4 35 35 H 1.09002 * 109.47145 * 300.00007 * 6 5 4 36 36 H 1.09000 * 109.58623 * 353.37606 * 10 9 7 37 37 H 1.09003 * 109.58373 * 113.65549 * 10 9 7 38 38 H 1.08997 * 109.49699 * 65.32393 * 11 10 9 39 39 H 1.09008 * 109.49047 * 185.41376 * 11 10 9 40 40 H 1.09001 * 109.45572 * 181.38528 * 12 11 10 41 41 H 1.08993 * 109.46542 * 301.36190 * 12 11 10 42 42 H 1.08994 * 109.49995 * 58.58403 * 13 12 11 43 43 H 1.09005 * 109.49237 * 178.64819 * 13 12 11 44 44 H 1.09008 * 109.46847 * 301.24641 * 16 14 9 45 45 H 1.08997 * 109.46857 * 61.24503 * 16 14 9 46 46 H 1.09006 * 109.46881 * 354.89129 * 18 17 16 47 47 H 1.09000 * 109.47160 * 114.88739 * 18 17 16 48 48 H 1.09003 * 109.47549 * 234.89519 * 18 17 16 49 49 H 0.96995 * 119.99833 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3052 0.0006 5 6 3.7647 -1.0255 0.0011 6 6 4.5297 -2.3506 0.0023 7 6 6.0113 -2.0752 0.0022 8 8 6.4156 -0.9318 0.0008 9 7 6.8871 -3.0997 0.0027 10 6 6.4163 -4.4871 0.1133 11 6 7.1490 -5.1652 1.2752 12 6 8.6594 -5.0286 1.0697 13 6 9.0421 -3.5468 1.0564 14 6 8.3305 -2.8507 -0.1135 15 1 8.6957 -3.2529 -1.0585 16 6 8.5975 -1.3452 -0.0561 17 7 10.0340 -1.0981 -0.2020 18 6 10.6308 -1.0128 -1.5373 19 6 10.8193 -0.9469 0.9097 20 1 10.4229 -1.1813 1.8866 21 6 12.1245 -0.4925 0.7809 22 7 12.5324 0.0233 -0.3593 23 14 13.3021 -0.6128 2.2259 24 1 14.0141 -1.9151 2.1772 25 1 14.2895 0.4941 2.1533 26 1 12.5391 -0.5129 3.4960 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3634 -0.5139 -0.8900 30 1 1.9971 -1.8770 -0.8892 31 1 1.9971 -1.8763 0.8908 32 1 4.0277 -0.4538 0.8911 33 1 4.0284 -0.4543 -0.8889 34 1 4.2668 -2.9228 -0.8874 35 1 4.2659 -2.9216 0.8926 36 1 5.3431 -4.4946 0.3039 37 1 6.6263 -5.0193 -0.8145 38 1 6.8647 -4.6878 2.2128 39 1 6.8803 -6.2212 1.3079 40 1 9.1833 -5.5317 1.8824 41 1 8.9394 -5.4843 0.1200 42 1 8.7400 -3.0846 1.9962 43 1 10.1210 -3.4509 0.9341 44 1 8.0596 -0.8497 -0.8645 45 1 8.2566 -0.9520 0.9017 46 1 9.8760 -1.2467 -2.2882 47 1 11.0076 -0.0035 -1.7031 48 1 11.4526 -1.7247 -1.6143 49 1 13.4443 0.3412 -0.4491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157534412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:14 Heat of formation + Delta-G solvation = -69.423736 kcal Electronic energy + Delta-G solvation = -26910.403830 eV Core-core repulsion = 23258.650944 eV Total energy + Delta-G solvation = -3651.752887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52532 -40.40388 -38.51612 -37.34148 -35.36058 -33.81186 -33.70720 -31.87596 -31.38354 -28.96620 -28.05441 -27.63863 -25.59084 -24.27934 -23.29627 -22.00252 -21.53513 -20.49096 -19.73837 -18.77952 -17.72763 -17.20853 -17.00467 -16.82388 -16.30919 -16.27924 -15.78469 -15.49994 -15.37192 -15.11697 -14.98842 -14.72794 -14.41047 -14.34279 -13.94311 -13.78648 -13.37131 -13.24912 -13.00069 -12.85137 -12.76129 -12.70586 -12.65775 -12.59454 -12.31737 -12.22182 -12.12385 -12.00369 -11.83349 -11.75719 -11.63653 -11.50233 -11.32178 -10.71284 -10.56855 -10.14056 -9.42298 -8.85107 -7.71413 -5.21450 1.12036 1.42319 1.44320 1.53165 1.77339 2.08357 2.52096 3.21934 3.31757 3.62819 3.78405 3.91846 3.99975 4.05360 4.10900 4.11977 4.17888 4.22747 4.39189 4.45058 4.52975 4.63172 4.66848 4.71217 4.73479 4.78031 4.78354 4.81438 4.88612 4.93720 5.06102 5.08305 5.14936 5.19485 5.21824 5.26657 5.31418 5.36773 5.42469 5.43938 5.53141 5.60338 5.79228 5.80780 6.32160 6.62871 6.70367 7.16692 7.37116 7.91168 8.31547 9.24440 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.003395 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.281079 B = 8244.425188 C = 9379.095723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.343 3.657 3 O -0.521 6.521 4 C -0.163 4.163 5 C -0.098 4.098 6 C -0.122 4.122 7 C 0.489 3.511 8 O -0.583 6.583 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.112 4.112 14 C 0.136 3.864 15 H 0.056 0.944 16 C 0.180 3.820 17 N -0.624 5.624 18 C 0.176 3.824 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.067 4.067 22 N -0.946 5.946 23 Si 0.970 3.030 24 H -0.282 1.282 25 H -0.295 1.295 26 H -0.273 1.273 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.107 0.893 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.028 0.972 46 H 0.017 0.983 47 H 0.033 0.967 48 H 0.001 0.999 49 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.488 -16.718 0.769 31.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.223 3.777 3 O -0.399 6.399 4 C -0.199 4.199 5 C -0.136 4.136 6 C -0.161 4.161 7 C 0.280 3.720 8 O -0.462 6.462 9 N -0.342 5.342 10 C -0.020 4.020 11 C -0.165 4.165 12 C -0.154 4.154 13 C -0.151 4.151 14 C 0.030 3.970 15 H 0.074 0.926 16 C 0.054 3.946 17 N -0.349 5.349 18 C 0.031 3.969 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.260 4.260 22 N -0.595 5.595 23 Si 0.798 3.202 24 H -0.209 1.209 25 H -0.222 1.222 26 H -0.198 1.198 27 H 0.137 0.863 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.035 0.965 47 H 0.051 0.949 48 H 0.020 0.980 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.846 -15.519 0.734 30.156 hybrid contribution 1.605 0.784 0.548 1.868 sum -24.241 -14.735 1.283 28.397 Atomic orbital electron populations 1.22348 0.91514 1.04825 1.06899 1.25512 0.93845 0.90347 0.68015 1.90477 1.73521 1.37525 1.38347 1.22208 0.92826 0.96983 1.07911 1.21077 0.95002 0.96176 1.01389 1.21755 0.87664 0.99513 1.07203 1.21755 0.90716 0.84302 0.75242 1.90814 1.80061 1.24145 1.51230 1.48477 1.05568 1.08052 1.72118 1.22118 1.00955 0.79408 0.99505 1.21907 0.93904 1.02378 0.98315 1.21545 0.97583 0.94051 1.02266 1.21791 0.99982 0.96555 0.96726 1.21907 0.79959 0.97552 0.97589 0.92640 1.21204 0.81648 0.92554 0.99201 1.44549 1.04216 1.83250 1.02887 1.20728 0.92825 0.99688 0.83665 1.19501 0.93948 1.35923 0.87638 0.91348 1.25670 0.99854 1.00684 0.99797 1.70320 1.16772 1.46447 1.25998 0.85202 0.78800 0.76991 0.79163 1.20903 1.22210 1.19768 0.86333 0.91691 0.86317 0.84707 0.84749 0.94470 0.94369 0.85354 0.85413 0.85918 0.90100 0.92203 0.87428 0.91424 0.91593 0.94315 0.92877 0.94107 0.95318 0.96453 0.94892 0.98026 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 10.26 71.24 0.73 -0.75 16 2 C 0.34 5.69 7.27 29.10 0.21 5.90 16 3 O -0.52 -15.63 16.71 -1.45 -0.02 -15.66 16 4 C -0.16 -1.66 5.64 29.85 0.17 -1.49 16 5 C -0.10 -2.12 3.79 30.60 0.12 -2.01 16 6 C -0.12 -2.00 4.10 29.85 0.12 -1.87 16 7 C 0.49 14.85 7.61 87.66 0.67 15.52 16 8 O -0.58 -25.18 11.39 -3.01 -0.03 -25.22 16 9 N -0.61 -17.07 2.97 -794.22 -2.36 -19.43 16 10 C 0.10 1.59 6.33 86.36 0.55 2.13 16 11 C -0.13 -2.08 6.08 30.67 0.19 -1.89 16 12 C -0.12 -2.84 5.88 30.62 0.18 -2.66 16 13 C -0.11 -4.05 4.69 30.82 0.14 -3.90 16 14 C 0.14 5.15 3.20 45.12 0.14 5.29 16 15 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.18 8.87 3.51 86.38 0.30 9.17 16 17 N -0.62 -35.21 2.68 -726.92 -1.95 -37.16 16 18 C 0.18 9.83 9.04 127.77 1.15 10.99 16 19 C -0.24 -14.31 8.24 84.03 0.69 -13.61 16 20 H 0.07 4.01 7.78 -2.91 -0.02 3.99 16 21 C -0.07 -4.04 5.32 84.86 0.45 -3.59 16 22 N -0.95 -59.83 9.96 21.65 0.22 -59.62 16 23 Si 0.97 48.21 29.57 68.60 2.03 50.24 16 24 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 27 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.71 8.12 -2.39 -0.02 0.69 16 29 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16 33 H 0.04 1.10 8.06 -2.39 -0.02 1.08 16 34 H 0.13 1.18 8.11 -2.38 -0.02 1.16 16 35 H 0.13 1.17 7.48 -2.39 -0.02 1.15 16 36 H 0.12 0.91 5.96 -2.39 -0.01 0.89 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 2.32 7.00 -2.38 -0.02 2.30 16 44 H 0.04 2.16 6.27 -2.38 -0.01 2.14 16 45 H 0.03 1.55 6.99 -2.39 -0.02 1.54 16 46 H 0.02 0.84 7.90 -2.38 -0.02 0.83 16 47 H 0.03 2.04 6.43 -2.39 -0.02 2.03 16 48 H 0.00 0.07 7.81 -2.39 -0.02 0.05 16 49 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -89.14 379.37 4.60 -84.54 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 0.90 Total: 5.09 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.82 Total: 17.21 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -4.09 Total: -116.21 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.06 Total: -40.88 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -89.14 4.60 -84.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157534412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.117 kcal (2) G-P(sol) polarization free energy of solvation -89.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds