Wall clock time and date at job start Fri Apr 10 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99929 * 2 1 4 4 H 1.09002 * 109.98893 * 358.91339 * 3 2 1 5 5 O 1.43740 * 109.87773 * 237.82878 * 3 2 1 6 6 C 1.44379 * 106.97892 * 267.09010 * 5 3 2 7 7 C 1.54997 * 103.48779 * 319.94109 * 6 5 3 8 8 C 1.54104 * 109.87840 * 119.99825 * 3 2 1 9 9 H 1.08994 * 110.48765 * 358.58442 * 8 3 2 10 10 C 1.50700 * 110.48341 * 236.06775 * 8 3 2 11 11 O 1.21276 * 120.00566 * 334.42891 * 10 8 3 12 12 N 1.34778 * 119.99436 * 154.42996 * 10 8 3 13 13 C 1.46503 * 120.00475 * 5.29377 * 12 10 8 14 14 C 1.50698 * 109.46879 * 265.25081 * 13 12 10 15 15 H 1.08001 * 120.00672 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99721 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99680 * 179.72180 * 16 14 13 19 19 H 1.48504 * 109.47265 * 89.99795 * 18 16 14 20 20 H 1.48506 * 109.47009 * 209.99250 * 18 16 14 21 21 H 1.48496 * 109.47413 * 329.99738 * 18 16 14 22 22 C 1.46506 * 119.99877 * 185.29907 * 12 10 8 23 23 C 1.52998 * 109.46738 * 269.99870 * 22 12 10 24 24 C 1.53006 * 109.46993 * 180.02562 * 23 22 12 25 25 N 1.46902 * 109.47187 * 179.97438 * 24 23 22 26 26 C 1.46897 * 111.00073 * 169.99993 * 25 24 23 27 27 C 1.46898 * 110.99857 * 293.95631 * 25 24 23 28 28 H 1.07997 * 119.99918 * 180.02562 * 1 2 3 29 29 H 1.07995 * 119.99684 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00268 * 179.97438 * 2 1 3 31 31 H 1.08997 * 110.61561 * 78.43690 * 6 5 3 32 32 H 1.08992 * 110.62206 * 201.43953 * 6 5 3 33 33 H 1.09006 * 110.90720 * 278.82211 * 7 6 5 34 34 H 1.08994 * 110.90786 * 155.22308 * 7 6 5 35 35 H 1.08997 * 109.47439 * 145.24700 * 13 12 10 36 36 H 1.08999 * 109.46626 * 25.24570 * 13 12 10 37 37 H 0.96998 * 120.00047 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47078 * 29.99365 * 22 12 10 39 39 H 1.08998 * 109.46945 * 149.99650 * 22 12 10 40 40 H 1.09002 * 109.46924 * 299.99589 * 23 22 12 41 41 H 1.08992 * 109.47524 * 59.99739 * 23 22 12 42 42 H 1.08994 * 109.46814 * 299.99882 * 24 23 22 43 43 H 1.08998 * 109.46835 * 59.99690 * 24 23 22 44 44 H 1.09000 * 109.46937 * 59.99791 * 26 25 24 45 45 H 1.08997 * 109.47114 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.46951 * 299.99850 * 26 25 24 47 47 H 1.08995 * 109.47596 * 59.99583 * 27 25 24 48 48 H 1.09003 * 109.47389 * 179.97438 * 27 25 24 49 49 H 1.09003 * 109.47330 * 299.99623 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3629 2.1399 -0.0194 5 8 2.9312 1.3685 -1.1442 6 6 4.2186 0.8669 -0.7254 7 6 4.3945 1.4633 0.6944 8 6 2.9530 1.3967 1.2551 9 1 2.8247 0.5122 1.8790 10 6 2.6334 2.6439 2.0381 11 8 2.1573 3.6075 1.4763 12 7 2.8768 2.6886 3.3630 13 6 3.5577 1.5707 4.0209 14 6 2.5333 0.6293 4.6000 15 1 1.4804 0.8425 4.4895 16 6 2.9404 -0.5039 5.2719 17 7 4.2225 -0.7634 5.4069 18 14 1.6707 -1.6668 5.9964 19 1 1.3092 -2.6955 4.9882 20 1 2.2358 -2.3297 7.1992 21 1 0.4576 -0.8999 6.3778 22 6 2.4603 3.8552 4.1454 23 6 3.5896 4.8873 4.1625 24 6 3.1549 6.1053 4.9801 25 7 4.2394 7.0961 4.9971 26 6 3.7798 8.3699 5.5662 27 6 5.4080 6.5849 5.7258 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 4.2118 -0.2223 -0.6860 32 1 5.0046 1.2230 -1.3913 33 1 4.7445 2.4943 0.6427 34 1 5.0726 0.8533 1.2913 35 1 4.1936 1.9519 4.8199 36 1 4.1694 1.0385 3.2924 37 1 4.5089 -1.5607 5.8793 38 1 1.5715 4.2966 3.6944 39 1 2.2347 3.5463 5.1661 40 1 4.4784 4.4458 4.6135 41 1 3.8152 5.1960 3.1419 42 1 2.2660 6.5468 4.5296 43 1 2.9296 5.7962 6.0007 44 1 3.4377 8.2087 6.5885 45 1 4.6021 9.0854 5.5665 46 1 2.9586 8.7610 4.9656 47 1 5.7704 5.6783 5.2413 48 1 6.1961 7.3379 5.7227 49 1 5.1249 6.3591 6.7539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448802321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:17 Heat of formation + Delta-G solvation = -62.052241 kcal Electronic energy + Delta-G solvation = -27110.978973 eV Core-core repulsion = 23459.545738 eV Total energy + Delta-G solvation = -3651.433235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.11711 -38.31520 -37.47111 -35.20169 -33.47423 -33.01549 -32.15460 -31.07658 -28.27383 -27.61576 -27.40436 -25.97090 -23.54411 -23.06264 -22.39179 -21.32220 -20.60281 -19.61333 -18.28218 -16.85283 -16.53030 -16.25642 -15.70146 -15.55927 -15.34732 -14.99179 -14.72561 -14.57737 -14.32591 -13.97030 -13.68501 -13.47035 -12.84881 -12.77162 -12.43699 -12.34039 -12.15490 -11.89141 -11.79330 -11.69936 -11.62940 -11.33234 -11.27263 -11.17496 -11.06652 -10.98598 -10.95069 -10.76058 -10.51883 -10.29353 -10.07913 -9.78622 -9.41733 -9.24753 -8.97972 -8.61934 -8.33987 -7.76474 -6.24739 -4.32337 2.44948 3.17778 3.24910 3.26352 3.31609 3.75407 4.08093 4.27507 4.33616 4.94517 4.97012 5.06669 5.08817 5.10526 5.15560 5.29133 5.36765 5.38857 5.41586 5.53610 5.56371 5.60600 5.66714 5.71620 5.78458 5.82916 5.89829 5.91464 5.97716 6.00528 6.02954 6.13377 6.16225 6.24154 6.44120 6.49582 6.63343 6.73749 6.80258 6.98325 7.04199 7.07102 7.12650 7.15956 7.49512 7.69830 7.98626 8.29523 8.72983 8.95978 9.36174 10.81743 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.005148 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.958173 B = 5437.322383 C = 7519.723637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.166 4.166 3 C 0.118 3.882 4 H 0.110 0.890 5 O -0.366 6.366 6 C 0.047 3.953 7 C -0.137 4.137 8 C -0.135 4.135 9 H 0.125 0.875 10 C 0.526 3.474 11 O -0.568 6.568 12 N -0.591 5.591 13 C 0.236 3.764 14 C -0.539 4.539 15 H 0.061 0.939 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 C 0.124 3.876 23 C -0.128 4.128 24 C 0.059 3.941 25 N -0.548 5.548 26 C 0.025 3.975 27 C 0.021 3.979 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.034 0.966 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.063 0.937 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 7.055 -3.332 7.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.184 4.184 3 C 0.060 3.940 4 H 0.127 0.873 5 O -0.285 6.285 6 C -0.030 4.030 7 C -0.176 4.176 8 C -0.157 4.157 9 H 0.142 0.858 10 C 0.314 3.686 11 O -0.449 6.449 12 N -0.320 5.320 13 C 0.116 3.884 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.529 5.529 18 Si 0.722 3.278 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.001 4.001 23 C -0.167 4.167 24 C -0.069 4.069 25 N -0.272 5.272 26 C -0.123 4.123 27 C -0.127 4.127 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.092 0.908 48 H 0.082 0.918 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.525 7.581 -4.188 8.676 hybrid contribution -0.718 -1.171 1.831 2.289 sum -0.193 6.410 -2.357 6.832 Atomic orbital electron populations 1.23794 0.95805 1.01812 1.00044 1.23328 0.96429 0.98645 1.00028 1.21811 0.92185 0.95843 0.84124 0.87276 1.88906 1.21509 1.84863 1.33243 1.23549 0.86342 0.98228 0.94850 1.23056 0.95469 1.02644 0.96389 1.22692 0.95854 0.99848 0.97260 0.85752 1.20103 0.77742 0.88288 0.82463 1.90597 1.46974 1.37554 1.69779 1.48158 1.57395 1.19590 1.06891 1.19464 0.92593 0.82966 0.93339 1.21496 0.93508 1.06749 1.35982 0.92057 1.24925 0.95353 0.97672 0.95701 1.69912 1.13967 1.27020 1.41962 0.86548 0.81526 0.80943 0.78809 1.20412 1.21072 1.19779 1.21198 0.96524 0.85915 0.96426 1.21934 0.99365 0.94327 1.01083 1.22077 0.93624 0.92471 0.98744 1.61970 1.07273 1.04122 1.53856 1.22364 1.00799 0.91776 0.97388 1.22437 0.93186 1.01072 0.96000 0.88332 0.88491 0.87149 0.92066 0.89079 0.90467 0.89108 0.94762 0.94132 0.92491 0.91185 0.90490 0.91775 0.91010 0.90791 0.94720 0.95856 0.91634 0.91455 0.90769 0.91772 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 14.32 29.01 0.42 -2.17 16 2 C -0.17 -2.65 8.87 -36.03 -0.32 -2.97 16 3 C 0.12 2.08 3.36 -27.30 -0.09 1.99 16 4 H 0.11 2.09 6.48 -51.93 -0.34 1.75 16 5 O -0.37 -6.34 11.18 -35.23 -0.39 -6.73 16 6 C 0.05 0.67 7.66 38.21 0.29 0.97 16 7 C -0.14 -2.20 6.28 -24.72 -0.16 -2.36 16 8 C -0.14 -2.50 2.07 -90.24 -0.19 -2.69 16 9 H 0.12 2.49 6.19 -51.93 -0.32 2.17 16 10 C 0.53 10.85 6.68 -10.98 -0.07 10.77 16 11 O -0.57 -12.72 15.28 5.56 0.08 -12.64 16 12 N -0.59 -12.11 2.46 -175.06 -0.43 -12.54 16 13 C 0.24 5.37 4.76 -5.19 -0.02 5.34 16 14 C -0.54 -13.47 8.99 -34.44 -0.31 -13.78 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -23.66 13.29 55.43 0.74 -22.92 16 18 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.12 2.24 5.39 -4.04 -0.02 2.22 16 23 C -0.13 -2.07 5.46 -26.73 -0.15 -2.22 16 24 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 25 N -0.55 -7.21 5.02 -251.26 -1.26 -8.47 16 26 C 0.03 0.27 9.57 60.06 0.57 0.84 16 27 C 0.02 0.26 9.32 60.06 0.56 0.82 16 28 H 0.10 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.10 1.37 7.85 -52.49 -0.41 0.96 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.26 7.87 -51.93 -0.41 0.86 16 34 H 0.09 1.39 7.66 -51.93 -0.40 0.99 16 35 H 0.03 0.83 8.11 -51.93 -0.42 0.40 16 36 H 0.04 0.94 5.73 -51.93 -0.30 0.64 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.07 1.28 7.50 -51.93 -0.39 0.89 16 39 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 40 H 0.06 1.06 6.55 -51.93 -0.34 0.72 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 43 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 44 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 47 H 0.07 0.95 6.47 -51.93 -0.34 0.61 16 48 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 49 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -28.52 393.20 -8.65 -37.17 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -8.69 Total: 6.02 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 0.40 Total: -0.82 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.95 Total: -43.93 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.31 Total: -19.37 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.52 -8.65 -37.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448802321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.886 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds