Wall clock time and date at job start Fri Apr 10 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99929 * 2 1 4 4 H 1.09002 * 109.98893 * 358.91339 * 3 2 1 5 5 O 1.43740 * 109.87773 * 237.82878 * 3 2 1 6 6 C 1.44379 * 106.97892 * 267.09010 * 5 3 2 7 7 C 1.54997 * 103.48779 * 319.94109 * 6 5 3 8 8 C 1.54104 * 109.87840 * 119.99825 * 3 2 1 9 9 H 1.08994 * 110.48765 * 358.58442 * 8 3 2 10 10 C 1.50700 * 110.48341 * 236.06775 * 8 3 2 11 11 O 1.21276 * 120.00566 * 334.42891 * 10 8 3 12 12 N 1.34778 * 119.99436 * 154.42996 * 10 8 3 13 13 C 1.46503 * 120.00475 * 5.29377 * 12 10 8 14 14 C 1.50698 * 109.46879 * 265.25081 * 13 12 10 15 15 H 1.08001 * 120.00672 * 359.97438 * 14 13 12 16 16 C 1.37885 * 119.99721 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99680 * 179.72180 * 16 14 13 19 19 H 1.48504 * 109.47265 * 89.99795 * 18 16 14 20 20 H 1.48506 * 109.47009 * 209.99250 * 18 16 14 21 21 H 1.48496 * 109.47413 * 329.99738 * 18 16 14 22 22 C 1.46506 * 119.99877 * 185.29907 * 12 10 8 23 23 C 1.52998 * 109.46738 * 269.99870 * 22 12 10 24 24 C 1.53006 * 109.46993 * 180.02562 * 23 22 12 25 25 N 1.46902 * 109.47187 * 179.97438 * 24 23 22 26 26 C 1.46897 * 111.00073 * 169.99993 * 25 24 23 27 27 C 1.46898 * 110.99857 * 293.95631 * 25 24 23 28 28 H 1.07997 * 119.99918 * 180.02562 * 1 2 3 29 29 H 1.07995 * 119.99684 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00268 * 179.97438 * 2 1 3 31 31 H 1.08997 * 110.61561 * 78.43690 * 6 5 3 32 32 H 1.08992 * 110.62206 * 201.43953 * 6 5 3 33 33 H 1.09006 * 110.90720 * 278.82211 * 7 6 5 34 34 H 1.08994 * 110.90786 * 155.22308 * 7 6 5 35 35 H 1.08997 * 109.47439 * 145.24700 * 13 12 10 36 36 H 1.08999 * 109.46626 * 25.24570 * 13 12 10 37 37 H 0.96998 * 120.00047 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.47078 * 29.99365 * 22 12 10 39 39 H 1.08998 * 109.46945 * 149.99650 * 22 12 10 40 40 H 1.09002 * 109.46924 * 299.99589 * 23 22 12 41 41 H 1.08992 * 109.47524 * 59.99739 * 23 22 12 42 42 H 1.08994 * 109.46814 * 299.99882 * 24 23 22 43 43 H 1.08998 * 109.46835 * 59.99690 * 24 23 22 44 44 H 1.09000 * 109.46937 * 59.99791 * 26 25 24 45 45 H 1.08997 * 109.47114 * 180.02562 * 26 25 24 46 46 H 1.09003 * 109.46951 * 299.99850 * 26 25 24 47 47 H 1.08995 * 109.47596 * 59.99583 * 27 25 24 48 48 H 1.09003 * 109.47389 * 179.97438 * 27 25 24 49 49 H 1.09003 * 109.47330 * 299.99623 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3629 2.1399 -0.0194 5 8 2.9312 1.3685 -1.1442 6 6 4.2186 0.8669 -0.7254 7 6 4.3945 1.4633 0.6944 8 6 2.9530 1.3967 1.2551 9 1 2.8247 0.5122 1.8790 10 6 2.6334 2.6439 2.0381 11 8 2.1573 3.6075 1.4763 12 7 2.8768 2.6886 3.3630 13 6 3.5577 1.5707 4.0209 14 6 2.5333 0.6293 4.6000 15 1 1.4804 0.8425 4.4895 16 6 2.9404 -0.5039 5.2719 17 7 4.2225 -0.7634 5.4069 18 14 1.6707 -1.6668 5.9964 19 1 1.3092 -2.6955 4.9882 20 1 2.2358 -2.3297 7.1992 21 1 0.4576 -0.8999 6.3778 22 6 2.4603 3.8552 4.1454 23 6 3.5896 4.8873 4.1625 24 6 3.1549 6.1053 4.9801 25 7 4.2394 7.0961 4.9971 26 6 3.7798 8.3699 5.5662 27 6 5.4080 6.5849 5.7258 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 4.2118 -0.2223 -0.6860 32 1 5.0046 1.2230 -1.3913 33 1 4.7445 2.4943 0.6427 34 1 5.0726 0.8533 1.2913 35 1 4.1936 1.9519 4.8199 36 1 4.1694 1.0385 3.2924 37 1 4.5089 -1.5607 5.8793 38 1 1.5715 4.2966 3.6944 39 1 2.2347 3.5463 5.1661 40 1 4.4784 4.4458 4.6135 41 1 3.8152 5.1960 3.1419 42 1 2.2660 6.5468 4.5296 43 1 2.9296 5.7962 6.0007 44 1 3.4377 8.2087 6.5885 45 1 4.6021 9.0854 5.5665 46 1 2.9586 8.7610 4.9656 47 1 5.7704 5.6783 5.2413 48 1 6.1961 7.3379 5.7227 49 1 5.1249 6.3591 6.7539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448802321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:15 Heat of formation + Delta-G solvation = -78.858405 kcal Electronic energy + Delta-G solvation = -27111.707743 eV Core-core repulsion = 23459.545738 eV Total energy + Delta-G solvation = -3652.162005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.61823 -39.74664 -38.60226 -36.88756 -34.83491 -34.65498 -33.67286 -32.46168 -29.55420 -29.24492 -28.50104 -27.31611 -25.07437 -24.66940 -23.61673 -22.67835 -21.80324 -20.88751 -19.88516 -18.62151 -18.21407 -17.72782 -17.07470 -16.81693 -16.50940 -16.39132 -16.22262 -15.86025 -15.78245 -15.31087 -14.96087 -14.68599 -14.49002 -14.22571 -13.93959 -13.62717 -13.39493 -13.27509 -13.20285 -12.99265 -12.84820 -12.73072 -12.66231 -12.59835 -12.45148 -12.41601 -12.29376 -12.23782 -12.05171 -11.84247 -11.70577 -11.50296 -10.78396 -10.68194 -10.56324 -10.36227 -9.49977 -9.33415 -8.20696 -6.34748 1.23655 1.40728 1.43699 1.51815 1.65774 2.20540 2.42242 3.01873 3.05954 3.10364 3.54403 3.60708 3.71796 3.90173 4.07398 4.12925 4.19898 4.21361 4.24433 4.26826 4.40037 4.44741 4.50429 4.58768 4.60042 4.65456 4.72887 4.73261 4.77921 4.80767 4.85350 4.93080 4.98424 4.99021 5.00018 5.06884 5.13996 5.19323 5.27285 5.60431 5.66048 5.76647 5.81476 5.88154 6.02771 6.04794 6.10397 6.54279 6.79269 7.25384 7.39257 8.84780 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008732 B = 0.005148 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3205.958173 B = 5437.322383 C = 7519.723637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.186 4.186 3 C 0.124 3.876 4 H 0.088 0.912 5 O -0.381 6.381 6 C 0.049 3.951 7 C -0.135 4.135 8 C -0.134 4.134 9 H 0.109 0.891 10 C 0.522 3.478 11 O -0.589 6.589 12 N -0.594 5.594 13 C 0.253 3.747 14 C -0.546 4.546 15 H 0.051 0.949 16 C 0.028 3.972 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.273 1.273 22 C 0.121 3.879 23 C -0.112 4.112 24 C 0.066 3.934 25 N -0.565 5.565 26 C 0.025 3.975 27 C 0.022 3.978 28 H 0.123 0.877 29 H 0.096 0.904 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.268 0.732 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.029 0.971 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.081 0.919 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 6.768 -3.288 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.204 4.204 3 C 0.066 3.934 4 H 0.106 0.894 5 O -0.300 6.300 6 C -0.027 4.027 7 C -0.173 4.173 8 C -0.156 4.156 9 H 0.127 0.873 10 C 0.311 3.689 11 O -0.471 6.471 12 N -0.323 5.323 13 C 0.132 3.868 14 C -0.584 4.584 15 H 0.070 0.930 16 C -0.173 4.173 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.002 4.002 23 C -0.151 4.151 24 C -0.062 4.062 25 N -0.289 5.289 26 C -0.123 4.123 27 C -0.126 4.126 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.139 0.861 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.098 0.902 46 H 0.090 0.910 47 H 0.078 0.922 48 H 0.100 0.900 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.282 7.308 -4.140 8.404 hybrid contribution -0.642 -1.026 1.814 2.181 sum -0.361 6.282 -2.326 6.708 Atomic orbital electron populations 1.24046 0.95488 1.02968 0.97929 1.23341 0.96995 0.98112 1.01978 1.21657 0.91875 0.96179 0.83714 0.89404 1.88878 1.22629 1.85360 1.33156 1.23749 0.85766 0.99174 0.93979 1.23064 0.93926 1.02591 0.97690 1.22670 0.97873 0.97754 0.97287 0.87312 1.20489 0.77161 0.88793 0.82431 1.90577 1.47966 1.38540 1.70063 1.48179 1.57201 1.19746 1.07151 1.19129 0.91969 0.83078 0.92626 1.21630 0.93325 1.07334 1.36121 0.93028 1.25555 0.96865 0.98931 0.95966 1.69991 1.15328 1.27597 1.42616 0.85669 0.79367 0.79167 0.78200 1.19783 1.20761 1.19761 1.21310 0.97222 0.85695 0.95981 1.21729 0.98247 0.94804 1.00299 1.21955 0.94093 0.91752 0.98437 1.61955 1.07275 1.04796 1.54907 1.22424 1.01569 0.90643 0.97637 1.22443 0.93332 1.01063 0.95782 0.85915 0.88581 0.86081 0.90396 0.86369 0.91146 0.88539 0.96332 0.94563 0.92298 0.91399 0.90506 0.92428 0.92971 0.90327 0.94196 0.95206 0.90180 0.91016 0.92210 0.90009 0.95347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 14.32 67.78 0.97 -3.67 16 2 C -0.19 -5.77 8.87 25.64 0.23 -5.55 16 3 C 0.12 4.37 3.36 30.22 0.10 4.47 16 4 H 0.09 3.45 6.48 -2.39 -0.02 3.43 16 5 O -0.38 -12.89 11.18 -148.98 -1.66 -14.56 16 6 C 0.05 1.33 7.66 72.67 0.56 1.89 16 7 C -0.13 -4.27 6.28 31.90 0.20 -4.07 16 8 C -0.13 -5.03 2.07 -10.55 -0.02 -5.05 16 9 H 0.11 4.42 6.19 -2.39 -0.01 4.41 16 10 C 0.52 22.02 6.68 87.66 0.59 22.61 16 11 O -0.59 -27.01 15.28 -3.02 -0.05 -27.06 16 12 N -0.59 -24.93 2.46 -826.15 -2.03 -26.96 16 13 C 0.25 11.70 4.76 85.63 0.41 12.11 16 14 C -0.55 -27.43 8.99 25.60 0.23 -27.20 16 15 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 16 C 0.03 1.40 5.46 84.66 0.46 1.86 16 17 N -0.92 -48.55 13.29 21.45 0.28 -48.26 16 18 Si 0.95 40.53 29.54 68.60 2.03 42.55 16 19 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 C 0.12 4.50 5.39 86.38 0.47 4.97 16 23 C -0.11 -3.68 5.46 30.60 0.17 -3.52 16 24 C 0.07 1.80 4.96 86.30 0.43 2.23 16 25 N -0.57 -14.29 5.02 -948.86 -4.76 -19.05 16 26 C 0.03 0.48 9.57 127.69 1.22 1.71 16 27 C 0.02 0.50 9.32 127.69 1.19 1.70 16 28 H 0.12 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.10 2.65 7.85 -2.91 -0.02 2.63 16 30 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.07 2.31 7.87 -2.38 -0.02 2.29 16 34 H 0.10 2.92 7.66 -2.39 -0.02 2.90 16 35 H 0.02 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.04 1.71 5.73 -2.39 -0.01 1.70 16 37 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 38 H 0.07 2.54 7.50 -2.39 -0.02 2.52 16 39 H 0.08 2.83 8.07 -2.39 -0.02 2.81 16 40 H 0.06 1.96 6.55 -2.39 -0.02 1.94 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.08 2.06 8.06 -2.39 -0.02 2.04 16 43 H 0.04 1.04 8.12 -2.39 -0.02 1.03 16 44 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 46 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 47 H 0.06 1.53 6.47 -2.39 -0.02 1.52 16 48 H 0.08 1.57 8.12 -2.39 -0.02 1.55 16 49 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -60.12 393.20 1.90 -58.22 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.90 Total: 30.62 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 7.19 Total: 4.49 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -6.51 Total: -94.27 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -1.71 Total: -41.62 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Total: -60.12 1.90 -58.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448802321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.635 kcal (2) G-P(sol) polarization free energy of solvation -60.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds