Wall clock time and date at job start Fri Apr 10 2020 22:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 119.99857 * 2 1 4 4 H 1.08000 * 119.99832 * 156.17010 * 3 2 1 5 5 C 1.38812 * 120.00330 * 336.16854 * 3 2 1 6 6 N 1.31621 * 119.99485 * 330.48787 * 5 3 2 7 7 Si 1.86797 * 119.99954 * 150.48501 * 5 3 2 8 8 H 1.48500 * 109.46723 * 180.02562 * 7 5 3 9 9 H 1.48498 * 109.47451 * 300.00399 * 7 5 3 10 10 H 1.48506 * 109.47039 * 60.00554 * 7 5 3 11 11 C 1.46501 * 119.99887 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49527 * 180.02562 * 11 2 1 13 13 C 1.53045 * 109.49462 * 300.06311 * 11 2 1 14 14 C 1.53041 * 109.53292 * 181.31909 * 13 11 2 15 15 C 1.53200 * 109.31172 * 298.63320 * 14 13 11 16 16 N 1.46925 * 108.77455 * 54.64150 * 15 14 13 17 17 C 1.34774 * 120.63359 * 126.38490 * 16 15 14 18 18 O 1.21274 * 120.00275 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99846 * 0.02562 * 17 16 15 20 20 C 1.52998 * 109.47024 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.48108 * 305.02445 * 20 19 17 22 22 C 1.53089 * 109.48202 * 185.00112 * 20 19 17 23 23 C 1.53175 * 109.16805 * 182.41320 * 22 20 19 24 24 C 1.53180 * 109.03580 * 56.97686 * 23 22 20 25 25 C 1.53093 * 109.16431 * 303.02340 * 24 23 22 26 26 O 1.42901 * 109.41504 * 57.60727 * 25 24 23 27 27 C 1.46932 * 118.76261 * 306.40870 * 16 15 14 28 28 H 1.09001 * 109.47066 * 93.02394 * 1 2 3 29 29 H 1.09000 * 109.47494 * 213.02589 * 1 2 3 30 30 H 1.08998 * 109.47352 * 333.02943 * 1 2 3 31 31 H 0.96997 * 120.00229 * 354.59198 * 6 5 3 32 32 H 1.08995 * 109.45731 * 301.33344 * 13 11 2 33 33 H 1.08994 * 109.45678 * 61.31581 * 13 11 2 34 34 H 1.08995 * 109.50226 * 58.58883 * 14 13 11 35 35 H 1.09000 * 109.49364 * 178.65211 * 14 13 11 36 36 H 1.09001 * 109.58023 * 174.42229 * 15 14 13 37 37 H 1.08994 * 109.58697 * 294.70674 * 15 14 13 38 38 H 1.08993 * 109.47430 * 300.00091 * 19 17 16 39 39 H 1.09006 * 109.46916 * 59.99666 * 19 17 16 40 40 H 1.09005 * 109.52354 * 302.32143 * 22 20 19 41 41 H 1.09005 * 109.52342 * 62.44099 * 22 20 19 42 42 H 1.08999 * 109.54846 * 176.85072 * 23 22 20 43 43 H 1.09003 * 109.53916 * 297.02442 * 23 22 20 44 44 H 1.09000 * 109.52119 * 62.93342 * 24 23 22 45 45 H 1.09001 * 109.51885 * 183.11611 * 24 23 22 46 46 H 1.08999 * 109.48026 * 177.59008 * 25 24 23 47 47 H 1.08997 * 109.47938 * 297.61675 * 25 24 23 48 48 H 1.08997 * 109.56032 * 293.78894 * 27 16 15 49 49 H 1.09001 * 109.61761 * 173.35398 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1606 1.2258 0.3779 5 6 1.5444 2.3369 -0.4857 6 7 0.6314 2.2519 -1.4300 7 14 2.0255 4.0061 0.2009 8 1 1.2394 5.0664 -0.4795 9 1 1.7451 4.0412 1.6588 10 1 3.4740 4.2377 -0.0303 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8269 -2.0719 1.2496 14 6 2.6163 -3.3829 1.2678 15 6 2.2495 -4.2123 0.0331 16 7 2.4664 -3.3941 -1.1678 17 6 3.2383 -3.8455 -2.1762 18 8 3.4092 -3.1608 -3.1624 19 6 3.8880 -5.2018 -2.0787 20 6 4.7022 -5.4695 -3.3461 21 1 4.0614 -5.3561 -4.2205 22 6 5.2598 -6.8946 -3.3032 23 6 6.1229 -7.1345 -4.5457 24 6 7.2308 -6.0780 -4.5961 25 6 6.5970 -4.6844 -4.5891 26 8 5.7835 -4.5384 -3.4234 27 6 1.8266 -2.0738 -1.2488 28 1 -0.3633 -0.0542 -1.0262 29 1 -0.3634 -0.8616 0.5601 30 1 -0.3634 0.9159 0.4661 31 1 0.4377 1.3952 -1.8416 32 1 2.0677 -1.4906 2.1396 33 1 0.7593 -2.2912 1.2367 34 1 3.6841 -3.1648 1.2555 35 1 2.3698 -3.9434 2.1695 36 1 2.8801 -5.1003 -0.0110 37 1 1.2026 -4.5101 0.0907 38 1 4.5469 -5.2275 -1.2109 39 1 3.1184 -5.9666 -1.9733 40 1 5.8678 -7.0210 -2.4074 41 1 4.4357 -7.6079 -3.2876 42 1 6.5684 -8.1280 -4.4940 43 1 5.5039 -7.0586 -5.4397 44 1 7.8787 -6.1879 -3.7265 45 1 7.8163 -6.2073 -5.5063 46 1 7.3820 -3.9281 -4.5816 47 1 5.9814 -4.5606 -5.4800 48 1 0.7445 -2.1951 -1.2975 49 1 2.1782 -1.5508 -2.1382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027359236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:17 Heat of formation + Delta-G solvation = -72.932868 kcal Electronic energy + Delta-G solvation = -27179.231843 eV Core-core repulsion = 23527.326789 eV Total energy + Delta-G solvation = -3651.905054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.19205 -39.14977 -37.35760 -35.24956 -33.74252 -33.06012 -32.27837 -31.22592 -29.21474 -28.02549 -26.10624 -25.21328 -24.35307 -23.38333 -22.44478 -21.59230 -20.43795 -19.51494 -18.52752 -17.33290 -16.89967 -16.59671 -16.09130 -15.58876 -14.96608 -14.74037 -14.66915 -14.36128 -14.14110 -14.00447 -13.66473 -13.51326 -13.17949 -12.96556 -12.90888 -12.74413 -12.46757 -12.15026 -12.02578 -11.89867 -11.44156 -11.36051 -11.28610 -11.01014 -10.89064 -10.72143 -10.58924 -10.50036 -10.42083 -10.31206 -10.01643 -9.93587 -9.54404 -9.45623 -9.34830 -8.35164 -8.24054 -6.89157 -6.03127 -3.15224 2.93532 3.24178 3.54682 3.57349 3.71668 3.75672 4.41305 4.52662 4.61162 4.63096 4.68808 4.89367 4.90379 5.02312 5.06554 5.12978 5.25586 5.27057 5.31520 5.36081 5.42427 5.49599 5.52444 5.56873 5.58249 5.66514 5.69068 5.73644 5.81208 5.86896 5.89825 5.97252 6.06712 6.10532 6.20409 6.33920 6.47075 6.52937 6.73135 6.79368 6.96682 7.02653 7.13287 7.24196 7.73668 8.04698 8.51718 8.61672 9.16074 9.90067 10.27881 11.24815 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.003279 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.251385 B = 8537.120554 C = 9408.723408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.593 5.593 3 C -0.359 4.359 4 H 0.058 0.942 5 C -0.020 4.020 6 N -0.909 5.909 7 Si 1.061 2.939 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.293 1.293 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.109 3.891 16 N -0.611 5.611 17 C 0.511 3.489 18 O -0.529 6.529 19 C -0.133 4.133 20 C 0.106 3.894 21 H 0.065 0.935 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.063 3.937 26 O -0.364 6.364 27 C 0.099 3.901 28 H 0.009 0.991 29 H 0.017 0.983 30 H 0.052 0.948 31 H 0.270 0.730 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.546 -22.215 -0.401 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.316 5.316 3 C -0.488 4.488 4 H 0.076 0.924 5 C -0.223 4.223 6 N -0.549 5.549 7 Si 0.891 3.109 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.220 1.220 11 C 0.060 3.940 12 H 0.084 0.916 13 C -0.171 4.171 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.346 5.346 17 C 0.299 3.701 18 O -0.405 6.405 19 C -0.173 4.173 20 C 0.048 3.952 21 H 0.083 0.917 22 C -0.189 4.189 23 C -0.159 4.159 24 C -0.195 4.195 25 C -0.014 4.014 26 O -0.283 6.283 27 C -0.025 4.025 28 H 0.027 0.973 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.314 -20.018 -0.863 21.330 hybrid contribution 0.308 -1.934 -0.084 1.960 sum 7.622 -21.952 -0.947 23.257 Atomic orbital electron populations 1.20954 0.84051 0.98644 0.97526 1.43986 1.00929 1.00833 1.85836 1.19953 1.01123 0.86760 1.40962 0.92404 1.25778 0.98969 1.01999 0.95572 1.70782 1.35874 1.28287 1.19936 0.83582 0.75470 0.76084 0.75744 1.21173 1.22129 1.21980 1.20668 0.96634 0.85952 0.90769 0.91602 1.22034 0.99447 0.95083 1.00549 1.21905 1.01125 0.97202 0.96803 1.21702 1.01104 0.93587 0.85067 1.48277 1.49510 1.19027 1.17751 1.20435 0.78624 0.88194 0.82878 1.90716 1.60458 1.58279 1.31041 1.21760 0.99759 0.96091 0.99718 1.21758 0.88355 0.87782 0.97331 0.91749 1.22238 1.00297 0.97179 0.99157 1.21567 0.97290 0.98953 0.98095 1.22222 0.98467 0.96126 1.02667 1.22509 0.94095 0.96169 0.88661 1.88017 1.41638 1.55834 1.42767 1.22460 0.96328 0.81445 1.02279 0.97308 0.96498 0.92965 0.91904 0.91689 0.92457 0.91669 0.91263 0.90369 0.91668 0.88257 0.87938 0.90960 0.90881 0.91571 0.91797 0.91148 0.91073 0.89011 0.93238 0.92563 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.19 7.97 59.84 0.48 3.67 16 2 N -0.59 -15.01 2.69 -173.35 -0.47 -15.47 16 3 C -0.36 -10.27 9.39 -15.06 -0.14 -10.41 16 4 H 0.06 1.67 7.95 -52.49 -0.42 1.26 16 5 C -0.02 -0.58 4.61 -17.43 -0.08 -0.66 16 6 N -0.91 -27.91 12.74 55.49 0.71 -27.20 16 7 Si 1.06 25.86 30.01 -169.99 -5.10 20.76 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 C 0.17 3.56 2.74 -67.81 -0.19 3.38 16 12 H 0.07 1.53 7.87 -51.93 -0.41 1.12 16 13 C -0.13 -2.21 5.11 -26.69 -0.14 -2.34 16 14 C -0.13 -1.66 6.08 -26.61 -0.16 -1.83 16 15 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 16 N -0.61 -9.86 2.97 -172.76 -0.51 -10.37 16 17 C 0.51 8.51 7.58 -10.99 -0.08 8.43 16 18 O -0.53 -11.28 14.83 -8.78 -0.13 -11.41 16 19 C -0.13 -1.52 3.76 -27.88 -0.10 -1.63 16 20 C 0.11 1.26 2.19 -26.69 -0.06 1.20 16 21 H 0.06 0.85 7.95 -51.93 -0.41 0.43 16 22 C -0.15 -1.27 5.42 -26.59 -0.14 -1.41 16 23 C -0.12 -0.95 6.03 -26.55 -0.16 -1.11 16 24 C -0.16 -1.34 6.14 -26.59 -0.16 -1.50 16 25 C 0.06 0.71 6.84 37.21 0.25 0.96 16 26 O -0.36 -5.28 9.64 -49.57 -0.48 -5.76 16 27 C 0.10 1.98 5.79 -3.71 -0.02 1.96 16 28 H 0.01 0.22 6.87 -51.93 -0.36 -0.13 16 29 H 0.02 0.34 6.46 -51.93 -0.34 0.01 16 30 H 0.05 1.35 7.27 -51.93 -0.38 0.97 16 31 H 0.27 8.37 6.37 -40.82 -0.26 8.11 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.02 7.69 -51.93 -0.40 0.62 16 39 H 0.10 0.84 7.94 -51.93 -0.41 0.43 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 1.12 7.51 -51.93 -0.39 0.73 16 49 H 0.09 2.14 7.01 -51.93 -0.36 1.78 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -34.46 371.46 -9.78 -44.24 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -8.66 Total: -0.35 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.73 Total: -0.04 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.27 Total: -53.04 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.61 Total: -17.17 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.10 Total: 20.76 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.46 -9.78 -44.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027359236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.689 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds