Wall clock time and date at job start Fri Apr 10 2020 22:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 119.99857 * 2 1 4 4 H 1.08000 * 119.99832 * 156.17010 * 3 2 1 5 5 C 1.38812 * 120.00330 * 336.16854 * 3 2 1 6 6 N 1.31621 * 119.99485 * 330.48787 * 5 3 2 7 7 Si 1.86797 * 119.99954 * 150.48501 * 5 3 2 8 8 H 1.48500 * 109.46723 * 180.02562 * 7 5 3 9 9 H 1.48498 * 109.47451 * 300.00399 * 7 5 3 10 10 H 1.48506 * 109.47039 * 60.00554 * 7 5 3 11 11 C 1.46501 * 119.99887 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49527 * 180.02562 * 11 2 1 13 13 C 1.53045 * 109.49462 * 300.06311 * 11 2 1 14 14 C 1.53041 * 109.53292 * 181.31909 * 13 11 2 15 15 C 1.53200 * 109.31172 * 298.63320 * 14 13 11 16 16 N 1.46925 * 108.77455 * 54.64150 * 15 14 13 17 17 C 1.34774 * 120.63359 * 126.38490 * 16 15 14 18 18 O 1.21274 * 120.00275 * 179.97438 * 17 16 15 19 19 C 1.50701 * 119.99846 * 0.02562 * 17 16 15 20 20 C 1.52998 * 109.47024 * 179.97438 * 19 17 16 21 21 H 1.08998 * 109.48108 * 305.02445 * 20 19 17 22 22 C 1.53089 * 109.48202 * 185.00112 * 20 19 17 23 23 C 1.53175 * 109.16805 * 182.41320 * 22 20 19 24 24 C 1.53180 * 109.03580 * 56.97686 * 23 22 20 25 25 C 1.53093 * 109.16431 * 303.02340 * 24 23 22 26 26 O 1.42901 * 109.41504 * 57.60727 * 25 24 23 27 27 C 1.46932 * 118.76261 * 306.40870 * 16 15 14 28 28 H 1.09001 * 109.47066 * 93.02394 * 1 2 3 29 29 H 1.09000 * 109.47494 * 213.02589 * 1 2 3 30 30 H 1.08998 * 109.47352 * 333.02943 * 1 2 3 31 31 H 0.96997 * 120.00229 * 354.59198 * 6 5 3 32 32 H 1.08995 * 109.45731 * 301.33344 * 13 11 2 33 33 H 1.08994 * 109.45678 * 61.31581 * 13 11 2 34 34 H 1.08995 * 109.50226 * 58.58883 * 14 13 11 35 35 H 1.09000 * 109.49364 * 178.65211 * 14 13 11 36 36 H 1.09001 * 109.58023 * 174.42229 * 15 14 13 37 37 H 1.08994 * 109.58697 * 294.70674 * 15 14 13 38 38 H 1.08993 * 109.47430 * 300.00091 * 19 17 16 39 39 H 1.09006 * 109.46916 * 59.99666 * 19 17 16 40 40 H 1.09005 * 109.52354 * 302.32143 * 22 20 19 41 41 H 1.09005 * 109.52342 * 62.44099 * 22 20 19 42 42 H 1.08999 * 109.54846 * 176.85072 * 23 22 20 43 43 H 1.09003 * 109.53916 * 297.02442 * 23 22 20 44 44 H 1.09000 * 109.52119 * 62.93342 * 24 23 22 45 45 H 1.09001 * 109.51885 * 183.11611 * 24 23 22 46 46 H 1.08999 * 109.48026 * 177.59008 * 25 24 23 47 47 H 1.08997 * 109.47938 * 297.61675 * 25 24 23 48 48 H 1.08997 * 109.56032 * 293.78894 * 27 16 15 49 49 H 1.09001 * 109.61761 * 173.35398 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1606 1.2258 0.3779 5 6 1.5444 2.3369 -0.4857 6 7 0.6314 2.2519 -1.4300 7 14 2.0255 4.0061 0.2009 8 1 1.2394 5.0664 -0.4795 9 1 1.7451 4.0412 1.6588 10 1 3.4740 4.2377 -0.0303 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8269 -2.0719 1.2496 14 6 2.6163 -3.3829 1.2678 15 6 2.2495 -4.2123 0.0331 16 7 2.4664 -3.3941 -1.1678 17 6 3.2383 -3.8455 -2.1762 18 8 3.4092 -3.1608 -3.1624 19 6 3.8880 -5.2018 -2.0787 20 6 4.7022 -5.4695 -3.3461 21 1 4.0614 -5.3561 -4.2205 22 6 5.2598 -6.8946 -3.3032 23 6 6.1229 -7.1345 -4.5457 24 6 7.2308 -6.0780 -4.5961 25 6 6.5970 -4.6844 -4.5891 26 8 5.7835 -4.5384 -3.4234 27 6 1.8266 -2.0738 -1.2488 28 1 -0.3633 -0.0542 -1.0262 29 1 -0.3634 -0.8616 0.5601 30 1 -0.3634 0.9159 0.4661 31 1 0.4377 1.3952 -1.8416 32 1 2.0677 -1.4906 2.1396 33 1 0.7593 -2.2912 1.2367 34 1 3.6841 -3.1648 1.2555 35 1 2.3698 -3.9434 2.1695 36 1 2.8801 -5.1003 -0.0110 37 1 1.2026 -4.5101 0.0907 38 1 4.5469 -5.2275 -1.2109 39 1 3.1184 -5.9666 -1.9733 40 1 5.8678 -7.0210 -2.4074 41 1 4.4357 -7.6079 -3.2876 42 1 6.5684 -8.1280 -4.4940 43 1 5.5039 -7.0586 -5.4397 44 1 7.8787 -6.1879 -3.7265 45 1 7.8163 -6.2073 -5.5063 46 1 7.3820 -3.9281 -4.5816 47 1 5.9814 -4.5606 -5.4800 48 1 0.7445 -2.1951 -1.2975 49 1 2.1782 -1.5508 -2.1382 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027359236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:16 Heat of formation + Delta-G solvation = -94.858344 kcal Electronic energy + Delta-G solvation = -27180.182603 eV Core-core repulsion = 23527.326789 eV Total energy + Delta-G solvation = -3652.855814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40976 -40.17788 -38.88758 -36.98902 -34.52448 -34.28188 -33.64071 -32.80652 -30.73744 -29.16173 -28.17204 -26.40988 -25.36758 -24.92690 -23.45865 -23.08757 -21.18659 -21.06973 -19.90034 -19.37438 -18.14877 -17.54867 -17.12671 -16.79241 -16.39855 -16.21360 -15.81278 -15.50137 -15.46635 -15.33865 -15.28204 -14.88957 -14.70916 -14.16559 -14.07604 -13.75946 -13.63461 -13.50279 -13.26244 -13.10837 -12.88648 -12.81188 -12.47765 -12.26262 -12.17779 -12.01326 -11.94979 -11.87971 -11.84124 -11.64966 -11.58711 -11.47416 -11.24872 -10.79938 -10.45601 -10.31321 -9.72665 -8.98533 -8.31499 -5.41970 1.54849 1.62144 1.66913 1.82041 1.98540 2.63671 2.85184 3.14796 3.45589 3.50972 3.72836 3.88092 3.94345 3.95072 4.00602 4.07681 4.11742 4.18147 4.21803 4.28422 4.32665 4.45800 4.52821 4.53628 4.58489 4.67352 4.70973 4.76578 4.80487 4.85873 4.86890 4.89838 4.97665 4.98846 5.06647 5.09516 5.12378 5.13423 5.17866 5.37734 5.40086 5.45075 5.49520 5.78655 6.32445 6.34991 6.49814 7.00661 7.23807 7.74526 8.11240 8.92700 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018734 B = 0.003279 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.251385 B = 8537.120554 C = 9408.723408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.148 3.852 2 N -0.612 5.612 3 C -0.367 4.367 4 H 0.047 0.953 5 C -0.073 4.073 6 N -0.936 5.936 7 Si 1.114 2.886 8 H -0.290 1.290 9 H -0.275 1.275 10 H -0.280 1.280 11 C 0.167 3.833 12 H 0.033 0.967 13 C -0.121 4.121 14 C -0.124 4.124 15 C 0.102 3.898 16 N -0.611 5.611 17 C 0.500 3.500 18 O -0.591 6.591 19 C -0.121 4.121 20 C 0.098 3.902 21 H 0.040 0.960 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.149 4.149 25 C 0.054 3.946 26 O -0.400 6.400 27 C 0.115 3.885 28 H -0.011 1.011 29 H 0.056 0.944 30 H 0.027 0.973 31 H 0.253 0.747 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.037 0.963 48 H 0.058 0.942 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.097 -25.935 1.885 27.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.003 3.997 2 N -0.335 5.335 3 C -0.497 4.497 4 H 0.065 0.935 5 C -0.270 4.270 6 N -0.577 5.577 7 Si 0.938 3.062 8 H -0.216 1.216 9 H -0.201 1.201 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.052 0.948 13 C -0.160 4.160 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.344 5.344 17 C 0.290 3.710 18 O -0.471 6.471 19 C -0.161 4.161 20 C 0.040 3.960 21 H 0.058 0.942 22 C -0.179 4.179 23 C -0.161 4.161 24 C -0.187 4.187 25 C -0.023 4.023 26 O -0.320 6.320 27 C -0.011 4.011 28 H 0.007 0.993 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.878 -23.817 1.470 25.129 hybrid contribution 0.171 -0.803 -0.830 1.168 sum 8.049 -24.621 0.639 25.911 Atomic orbital electron populations 1.20779 0.83323 0.99002 0.96643 1.44218 1.01626 1.01525 1.86149 1.20179 1.01021 0.88540 1.39953 0.93537 1.27205 0.98832 1.05629 0.95309 1.70915 1.37814 1.27273 1.21715 0.82894 0.75718 0.71741 0.75885 1.21615 1.20090 1.20566 1.20800 0.94382 0.85249 0.93607 0.94829 1.21882 1.00718 0.96497 0.96893 1.21905 0.99891 0.95209 0.99223 1.22138 1.03612 0.93931 0.82169 1.48378 1.48872 1.17641 1.19547 1.21555 0.77820 0.89823 0.81803 1.90694 1.62431 1.60390 1.33551 1.21883 1.00658 0.93181 1.00333 1.21948 0.87731 0.89657 0.96699 0.94215 1.22187 1.01197 0.94737 0.99747 1.21621 0.96970 0.99649 0.97866 1.22160 0.98743 0.94239 1.03563 1.22646 0.93766 0.98385 0.87487 1.87958 1.42630 1.57612 1.43768 1.21866 0.96340 0.83642 0.99239 0.99290 0.92554 0.95448 0.93671 0.92726 0.91484 0.92388 0.86952 0.85879 0.89484 0.86034 0.83521 0.89932 0.88404 0.89297 0.92187 0.90837 0.89569 0.89345 0.94440 0.92356 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.24 7.97 127.77 1.02 8.26 16 2 N -0.61 -32.12 2.69 -702.35 -1.89 -34.00 16 3 C -0.37 -21.85 9.39 84.03 0.79 -21.06 16 4 H 0.05 2.81 7.95 -2.91 -0.02 2.79 16 5 C -0.07 -4.35 4.61 84.86 0.39 -3.96 16 6 N -0.94 -59.92 12.74 21.65 0.28 -59.65 16 7 Si 1.11 53.35 30.01 68.60 2.06 55.41 16 8 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 C 0.17 7.26 2.74 45.07 0.12 7.38 16 12 H 0.03 1.64 7.87 -2.39 -0.02 1.62 16 13 C -0.12 -3.83 5.11 30.62 0.16 -3.67 16 14 C -0.12 -2.64 6.08 30.67 0.19 -2.45 16 15 C 0.10 1.95 6.34 86.37 0.55 2.50 16 16 N -0.61 -19.12 2.97 -818.90 -2.43 -21.55 16 17 C 0.50 16.56 7.58 87.66 0.66 17.22 16 18 O -0.59 -26.78 14.83 10.70 0.16 -26.62 16 19 C -0.12 -2.41 3.76 29.85 0.11 -2.29 16 20 C 0.10 2.20 2.19 30.62 0.07 2.27 16 21 H 0.04 1.07 7.95 -2.39 -0.02 1.05 16 22 C -0.14 -1.89 5.42 30.68 0.17 -1.73 16 23 C -0.12 -1.62 6.03 30.71 0.19 -1.43 16 24 C -0.15 -2.32 6.14 30.69 0.19 -2.13 16 25 C 0.05 1.26 6.84 72.01 0.49 1.75 16 26 O -0.40 -11.78 9.64 -135.27 -1.30 -13.09 16 27 C 0.11 4.79 5.79 86.36 0.50 5.29 16 28 H -0.01 -0.58 6.87 -2.39 -0.02 -0.59 16 29 H 0.06 2.27 6.46 -2.39 -0.02 2.25 16 30 H 0.03 1.44 7.27 -2.39 -0.02 1.42 16 31 H 0.25 16.66 6.37 -92.71 -0.59 16.07 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.01 6.73 -2.39 -0.02 1.99 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.12 1.33 5.93 -2.39 -0.01 1.32 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.94 7.69 -2.39 -0.02 1.92 16 39 H 0.15 1.61 7.94 -2.38 -0.02 1.59 16 40 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 41 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.06 2.37 7.51 -2.39 -0.02 2.36 16 49 H 0.03 1.79 7.01 -2.39 -0.02 1.78 16 Total: -1.00 -83.87 371.46 3.54 -80.33 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.08 Total: 13.23 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.59 Total: 5.94 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -4.05 Total: -115.20 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.15 Total: -39.71 kcal Atomic # 14 Polarization: 53.35 SS G_CDS: 2.06 Total: 55.41 kcal Total: -83.87 3.54 -80.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027359236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.530 kcal (2) G-P(sol) polarization free energy of solvation -83.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds