Wall clock time and date at job start Fri Apr 10 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36945 * 119.99829 * 2 1 4 4 H 1.07999 * 119.99472 * 202.06601 * 3 2 1 5 5 C 1.38808 * 120.00148 * 22.06669 * 3 2 1 6 6 N 1.31622 * 119.99818 * 12.40193 * 5 3 2 7 7 Si 1.86797 * 119.99868 * 192.40489 * 5 3 2 8 8 H 1.48500 * 109.47146 * 59.99995 * 7 5 3 9 9 H 1.48500 * 109.46881 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47159 * 299.99950 * 7 5 3 11 11 C 1.46496 * 120.00328 * 179.97438 * 2 1 3 12 12 H 1.08992 * 109.50307 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49672 * 59.93472 * 11 2 1 14 14 C 1.53043 * 109.53703 * 178.65531 * 13 11 2 15 15 C 1.53189 * 109.31502 * 61.36915 * 14 13 11 16 16 N 1.46925 * 108.77381 * 305.36176 * 15 14 13 17 17 C 1.34774 * 120.63295 * 233.63231 * 16 15 14 18 18 O 1.21287 * 120.00182 * 180.02562 * 17 16 15 19 19 C 1.50696 * 119.99985 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47298 * 179.97438 * 19 17 16 21 21 H 1.09008 * 109.48172 * 55.02228 * 20 19 17 22 22 C 1.53093 * 109.48300 * 175.05678 * 20 19 17 23 23 C 1.53179 * 109.16433 * 177.59478 * 22 20 19 24 24 C 1.53179 * 109.03487 * 303.01785 * 23 22 20 25 25 C 1.53091 * 109.16406 * 56.97781 * 24 23 22 26 26 O 1.42903 * 109.41815 * 302.39404 * 25 24 23 27 27 C 1.46997 * 118.75451 * 53.60867 * 16 15 14 28 28 H 1.08997 * 109.47201 * 274.30796 * 1 2 3 29 29 H 1.09003 * 109.47143 * 34.30690 * 1 2 3 30 30 H 1.09000 * 109.47045 * 154.31074 * 1 2 3 31 31 H 0.96996 * 119.99694 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46347 * 298.67177 * 13 11 2 33 33 H 1.09001 * 109.46305 * 58.63158 * 13 11 2 34 34 H 1.09005 * 109.49637 * 181.31568 * 14 13 11 35 35 H 1.08992 * 109.49600 * 301.41198 * 14 13 11 36 36 H 1.08997 * 109.59010 * 65.14584 * 15 14 13 37 37 H 1.09005 * 109.58735 * 185.43758 * 15 14 13 38 38 H 1.09003 * 109.46846 * 300.00056 * 19 17 16 39 39 H 1.09000 * 109.47585 * 59.99709 * 19 17 16 40 40 H 1.09000 * 109.52178 * 297.49380 * 22 20 19 41 41 H 1.08994 * 109.52491 * 57.68579 * 22 20 19 42 42 H 1.09003 * 109.54164 * 183.15502 * 23 22 20 43 43 H 1.09000 * 109.62028 * 62.92750 * 23 22 20 44 44 H 1.09001 * 109.51926 * 297.07739 * 24 23 22 45 45 H 1.08997 * 109.57541 * 176.92395 * 24 23 22 46 46 H 1.08998 * 109.48008 * 182.40525 * 25 24 23 47 47 H 1.09010 * 109.47684 * 62.37763 * 25 24 23 48 48 H 1.09004 * 109.63362 * 186.61952 * 27 16 15 49 49 H 1.08998 * 109.58352 * 66.16941 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3514 5 6 1.5319 2.3441 0.4516 6 7 0.3898 2.2701 1.1017 7 14 2.3213 4.0075 0.1366 8 1 2.4585 4.2212 -1.3265 9 1 1.4690 5.0773 0.7149 10 1 3.6636 4.0464 0.7705 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8270 -2.0729 -1.2476 14 6 2.6170 -3.3836 -1.2650 15 6 2.2509 -4.2123 -0.0297 16 7 2.4678 -3.3931 1.1705 17 6 3.2404 -3.8433 2.1789 18 8 3.4112 -3.1576 3.1646 19 6 3.8919 -5.1986 2.0816 20 6 4.7077 -5.4644 3.3484 21 1 4.0674 -5.3522 4.2234 22 6 5.2686 -6.8882 3.3051 23 6 6.1330 -7.1262 4.5471 24 6 7.2386 -6.0671 4.5967 25 6 6.6017 -4.6750 4.5900 26 8 5.7870 -4.5308 3.4248 27 6 1.8266 -2.0727 1.2507 28 1 -0.3633 0.0772 1.0247 29 1 -0.3633 0.8489 -0.5792 30 1 -0.3633 -0.9261 -0.4455 31 1 -0.0421 3.0794 1.4170 32 1 0.7594 -2.2926 -1.2345 33 1 2.0672 -1.4923 -2.1383 34 1 2.3701 -3.9453 -2.1660 35 1 3.6847 -3.1650 -1.2532 36 1 1.2034 -4.5084 -0.0856 37 1 2.8802 -5.1013 0.0136 38 1 3.1234 -5.9644 1.9765 39 1 4.5508 -5.2236 1.2137 40 1 4.4462 -7.6034 3.2913 41 1 5.8763 -7.0133 2.4089 42 1 6.5808 -8.1186 4.4950 43 1 5.5158 -7.0511 5.4424 44 1 7.8861 -6.1755 3.7266 45 1 7.8260 -6.1947 5.5059 46 1 7.3848 -3.9170 4.5821 47 1 5.9862 -4.5526 5.4814 48 1 2.1776 -1.5486 2.1397 49 1 0.7445 -2.1944 1.2991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027359239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:28 Heat of formation + Delta-G solvation = -69.224723 kcal Electronic energy + Delta-G solvation = -27130.854859 eV Core-core repulsion = 23479.110602 eV Total energy + Delta-G solvation = -3651.744257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.13237 -39.09721 -37.24587 -35.00371 -33.71763 -33.00132 -32.17205 -31.19681 -29.22266 -28.00496 -25.95937 -25.14965 -24.32621 -23.52061 -22.42504 -21.58573 -20.41303 -19.41539 -18.43550 -16.91717 -16.65007 -16.56254 -16.04926 -15.50176 -15.02146 -14.72629 -14.67803 -14.48562 -14.07895 -13.86662 -13.62005 -13.56676 -12.92692 -12.83235 -12.70835 -12.56934 -12.42633 -12.17276 -11.88557 -11.79458 -11.39933 -11.26940 -11.14373 -10.99161 -10.87048 -10.74142 -10.57469 -10.39806 -10.34993 -10.29255 -10.12506 -9.79703 -9.69738 -9.47791 -9.30870 -8.52309 -8.19694 -6.70655 -5.67163 -3.12689 2.99570 3.30867 3.44470 3.48530 3.50048 3.74650 4.44871 4.54630 4.55597 4.63479 4.71603 4.93821 4.95341 5.05493 5.11070 5.19264 5.28786 5.33248 5.36824 5.44895 5.49310 5.52955 5.59240 5.60239 5.65388 5.69881 5.71650 5.81019 5.84358 5.92525 5.98665 6.07493 6.09309 6.19531 6.29629 6.44543 6.57095 6.75944 6.85172 7.00334 7.07160 7.27015 7.43236 7.76792 7.81209 7.86336 8.44594 8.58691 9.28952 9.91652 10.39993 11.37745 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.003312 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.572939 B = 8451.847256 C = 9395.387553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.109 3.891 16 N -0.611 5.611 17 C 0.511 3.489 18 O -0.530 6.530 19 C -0.134 4.134 20 C 0.106 3.894 21 H 0.065 0.935 22 C -0.151 4.151 23 C -0.122 4.122 24 C -0.157 4.157 25 C 0.063 3.937 26 O -0.364 6.364 27 C 0.100 3.900 28 H 0.028 0.972 29 H 0.044 0.956 30 H -0.002 1.002 31 H 0.253 0.747 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 -21.979 1.206 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.346 5.346 17 C 0.298 3.702 18 O -0.406 6.406 19 C -0.174 4.174 20 C 0.048 3.952 21 H 0.083 0.917 22 C -0.189 4.189 23 C -0.159 4.159 24 C -0.195 4.195 25 C -0.014 4.014 26 O -0.282 6.282 27 C -0.024 4.024 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.109 0.891 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.806 -21.278 1.673 22.727 hybrid contribution 0.259 0.691 0.021 0.738 sum 8.064 -20.588 1.694 22.176 Atomic orbital electron populations 1.20785 0.82610 0.95558 0.99270 1.43937 1.01844 1.00056 1.85561 1.19197 0.97837 0.85189 1.36220 0.91422 1.25015 0.97796 0.98502 0.98269 1.70064 1.18327 1.27126 1.39744 0.86312 0.78544 0.83723 0.77835 1.21127 1.21654 1.20901 1.20625 0.96440 0.86181 0.90819 0.91799 1.22078 0.99572 0.94999 1.00585 1.21906 1.01086 0.97300 0.96740 1.21696 1.01082 0.93549 0.85140 1.48318 1.49392 1.19172 1.17687 1.20413 0.78681 0.88145 0.82921 1.90717 1.60574 1.58210 1.31083 1.21760 0.99723 0.96223 0.99651 1.21762 0.88361 0.87706 0.97397 0.91746 1.22238 1.00269 0.97240 0.99119 1.21568 0.97305 0.98916 0.98120 1.22222 0.98471 0.96160 1.02647 1.22506 0.94066 0.96154 0.88706 1.88018 1.41732 1.55710 1.42762 1.22493 0.96474 0.81148 1.02257 0.95375 0.93737 0.98308 0.93718 0.92319 0.91787 0.91372 0.91730 0.91682 0.90466 0.87965 0.88293 0.90884 0.90960 0.91602 0.91801 0.91171 0.91108 0.89036 0.93245 0.89143 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 7.91 59.85 0.47 4.49 16 2 N -0.59 -15.06 2.82 -173.35 -0.49 -15.55 16 3 C -0.25 -7.19 9.60 -15.06 -0.14 -7.33 16 4 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.91 -27.00 10.63 55.49 0.59 -26.41 16 7 Si 0.91 22.46 29.57 -169.99 -5.03 17.43 16 8 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.17 3.54 2.74 -67.81 -0.19 3.36 16 12 H 0.06 1.44 7.86 -51.93 -0.41 1.03 16 13 C -0.13 -2.23 5.13 -26.69 -0.14 -2.36 16 14 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 15 C 0.11 1.28 6.34 -3.71 -0.02 1.26 16 16 N -0.61 -9.85 2.97 -172.71 -0.51 -10.37 16 17 C 0.51 8.49 7.58 -10.99 -0.08 8.41 16 18 O -0.53 -11.25 14.84 -8.85 -0.13 -11.38 16 19 C -0.13 -1.52 3.76 -27.89 -0.10 -1.63 16 20 C 0.11 1.26 2.19 -26.68 -0.06 1.20 16 21 H 0.06 0.85 7.96 -51.92 -0.41 0.43 16 22 C -0.15 -1.27 5.42 -26.59 -0.14 -1.41 16 23 C -0.12 -0.96 6.03 -26.55 -0.16 -1.12 16 24 C -0.16 -1.33 6.14 -26.59 -0.16 -1.50 16 25 C 0.06 0.71 6.84 37.20 0.25 0.96 16 26 O -0.36 -5.25 9.64 -49.63 -0.48 -5.73 16 27 C 0.10 2.01 5.79 -3.67 -0.02 1.99 16 28 H 0.03 0.76 7.41 -51.93 -0.39 0.37 16 29 H 0.04 1.18 7.20 -51.93 -0.37 0.81 16 30 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.67 5.94 -51.93 -0.31 0.37 16 38 H 0.10 0.85 7.94 -51.93 -0.41 0.43 16 39 H 0.10 1.01 7.70 -51.93 -0.40 0.61 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 48 H 0.09 2.17 7.01 -51.93 -0.36 1.81 16 49 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -33.64 371.97 -9.95 -43.59 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.76 Total: -1.65 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -0.75 Total: 4.47 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.41 Total: -52.33 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.61 Total: -17.11 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.64 -9.95 -43.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027359239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.639 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds