Wall clock time and date at job start Fri Apr 10 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36945 * 119.99829 * 2 1 4 4 H 1.07999 * 119.99472 * 202.06601 * 3 2 1 5 5 C 1.38808 * 120.00148 * 22.06669 * 3 2 1 6 6 N 1.31622 * 119.99818 * 12.40193 * 5 3 2 7 7 Si 1.86797 * 119.99868 * 192.40489 * 5 3 2 8 8 H 1.48500 * 109.47146 * 59.99995 * 7 5 3 9 9 H 1.48500 * 109.46881 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47159 * 299.99950 * 7 5 3 11 11 C 1.46496 * 120.00328 * 179.97438 * 2 1 3 12 12 H 1.08992 * 109.50307 * 180.02562 * 11 2 1 13 13 C 1.53039 * 109.49672 * 59.93472 * 11 2 1 14 14 C 1.53043 * 109.53703 * 178.65531 * 13 11 2 15 15 C 1.53189 * 109.31502 * 61.36915 * 14 13 11 16 16 N 1.46925 * 108.77381 * 305.36176 * 15 14 13 17 17 C 1.34774 * 120.63295 * 233.63231 * 16 15 14 18 18 O 1.21287 * 120.00182 * 180.02562 * 17 16 15 19 19 C 1.50696 * 119.99985 * 0.02562 * 17 16 15 20 20 C 1.52999 * 109.47298 * 179.97438 * 19 17 16 21 21 H 1.09008 * 109.48172 * 55.02228 * 20 19 17 22 22 C 1.53093 * 109.48300 * 175.05678 * 20 19 17 23 23 C 1.53179 * 109.16433 * 177.59478 * 22 20 19 24 24 C 1.53179 * 109.03487 * 303.01785 * 23 22 20 25 25 C 1.53091 * 109.16406 * 56.97781 * 24 23 22 26 26 O 1.42903 * 109.41815 * 302.39404 * 25 24 23 27 27 C 1.46997 * 118.75451 * 53.60867 * 16 15 14 28 28 H 1.08997 * 109.47201 * 274.30796 * 1 2 3 29 29 H 1.09003 * 109.47143 * 34.30690 * 1 2 3 30 30 H 1.09000 * 109.47045 * 154.31074 * 1 2 3 31 31 H 0.96996 * 119.99694 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.46347 * 298.67177 * 13 11 2 33 33 H 1.09001 * 109.46305 * 58.63158 * 13 11 2 34 34 H 1.09005 * 109.49637 * 181.31568 * 14 13 11 35 35 H 1.08992 * 109.49600 * 301.41198 * 14 13 11 36 36 H 1.08997 * 109.59010 * 65.14584 * 15 14 13 37 37 H 1.09005 * 109.58735 * 185.43758 * 15 14 13 38 38 H 1.09003 * 109.46846 * 300.00056 * 19 17 16 39 39 H 1.09000 * 109.47585 * 59.99709 * 19 17 16 40 40 H 1.09000 * 109.52178 * 297.49380 * 22 20 19 41 41 H 1.08994 * 109.52491 * 57.68579 * 22 20 19 42 42 H 1.09003 * 109.54164 * 183.15502 * 23 22 20 43 43 H 1.09000 * 109.62028 * 62.92750 * 23 22 20 44 44 H 1.09001 * 109.51926 * 297.07739 * 24 23 22 45 45 H 1.08997 * 109.57541 * 176.92395 * 24 23 22 46 46 H 1.08998 * 109.48008 * 182.40525 * 25 24 23 47 47 H 1.09010 * 109.47684 * 62.37763 * 25 24 23 48 48 H 1.09004 * 109.63362 * 186.61952 * 27 16 15 49 49 H 1.08998 * 109.58352 * 66.16941 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1703 1.2202 -0.3514 5 6 1.5319 2.3441 0.4516 6 7 0.3898 2.2701 1.1017 7 14 2.3213 4.0075 0.1366 8 1 2.4585 4.2212 -1.3265 9 1 1.4690 5.0773 0.7149 10 1 3.6636 4.0464 0.7705 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0700 0.0009 13 6 1.8270 -2.0729 -1.2476 14 6 2.6170 -3.3836 -1.2650 15 6 2.2509 -4.2123 -0.0297 16 7 2.4678 -3.3931 1.1705 17 6 3.2404 -3.8433 2.1789 18 8 3.4112 -3.1576 3.1646 19 6 3.8919 -5.1986 2.0816 20 6 4.7077 -5.4644 3.3484 21 1 4.0674 -5.3522 4.2234 22 6 5.2686 -6.8882 3.3051 23 6 6.1330 -7.1262 4.5471 24 6 7.2386 -6.0671 4.5967 25 6 6.6017 -4.6750 4.5900 26 8 5.7870 -4.5308 3.4248 27 6 1.8266 -2.0727 1.2507 28 1 -0.3633 0.0772 1.0247 29 1 -0.3633 0.8489 -0.5792 30 1 -0.3633 -0.9261 -0.4455 31 1 -0.0421 3.0794 1.4170 32 1 0.7594 -2.2926 -1.2345 33 1 2.0672 -1.4923 -2.1383 34 1 2.3701 -3.9453 -2.1660 35 1 3.6847 -3.1650 -1.2532 36 1 1.2034 -4.5084 -0.0856 37 1 2.8802 -5.1013 0.0136 38 1 3.1234 -5.9644 1.9765 39 1 4.5508 -5.2236 1.2137 40 1 4.4462 -7.6034 3.2913 41 1 5.8763 -7.0133 2.4089 42 1 6.5808 -8.1186 4.4950 43 1 5.5158 -7.0511 5.4424 44 1 7.8861 -6.1755 3.7266 45 1 7.8260 -6.1947 5.5059 46 1 7.3848 -3.9170 4.5821 47 1 5.9862 -4.5526 5.4814 48 1 2.1776 -1.5486 2.1397 49 1 0.7445 -2.1944 1.2991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027359239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:27 Heat of formation + Delta-G solvation = -90.297684 kcal Electronic energy + Delta-G solvation = -27131.768651 eV Core-core repulsion = 23479.110602 eV Total energy + Delta-G solvation = -3652.658049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33260 -40.12089 -38.74961 -36.73681 -34.49089 -34.18629 -33.58540 -32.78436 -30.73581 -29.11642 -28.06790 -26.33500 -25.43908 -24.98308 -23.42077 -23.01873 -21.15250 -20.95008 -19.77279 -18.78301 -18.07752 -17.50657 -17.03457 -16.99382 -16.57449 -16.03798 -15.76046 -15.44013 -15.42875 -15.21781 -15.10984 -14.77294 -14.39010 -14.09166 -14.01543 -13.76083 -13.55060 -13.42658 -13.19567 -12.93537 -12.86240 -12.78295 -12.48718 -12.22584 -12.19956 -12.12211 -12.07217 -11.93097 -11.72594 -11.68800 -11.53669 -11.38583 -11.21441 -10.72588 -10.65681 -10.27963 -9.62426 -8.77723 -7.85768 -5.33925 1.42622 1.45343 1.52027 1.73579 2.05887 2.49200 2.88737 3.27322 3.53643 3.63461 3.76949 3.96814 3.97035 4.00394 4.08422 4.15360 4.16897 4.25557 4.27251 4.37587 4.39748 4.49288 4.59056 4.64048 4.68841 4.75082 4.79298 4.83022 4.92282 4.92463 4.96512 5.00833 5.07229 5.11520 5.15714 5.18212 5.20656 5.26041 5.42669 5.43552 5.53910 5.57592 5.62580 5.70143 6.30099 6.38597 6.57176 7.12407 7.30680 7.84678 8.26703 9.16897 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.003312 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.572939 B = 8451.847256 C = 9395.387553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.269 4.269 4 H 0.065 0.935 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.273 1.273 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.167 3.833 12 H 0.038 0.962 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.102 3.898 16 N -0.611 5.611 17 C 0.500 3.500 18 O -0.591 6.591 19 C -0.122 4.122 20 C 0.098 3.902 21 H 0.040 0.960 22 C -0.141 4.141 23 C -0.124 4.124 24 C -0.150 4.150 25 C 0.054 3.946 26 O -0.399 6.399 27 C 0.116 3.884 28 H -0.003 1.003 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.249 0.751 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.089 0.911 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 -25.700 -0.765 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.399 4.399 4 H 0.083 0.917 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.199 1.199 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.059 3.941 12 H 0.057 0.943 13 C -0.162 4.162 14 C -0.162 4.162 15 C -0.019 4.019 16 N -0.344 5.344 17 C 0.290 3.710 18 O -0.471 6.471 19 C -0.161 4.161 20 C 0.040 3.960 21 H 0.058 0.942 22 C -0.179 4.179 23 C -0.161 4.161 24 C -0.187 4.187 25 C -0.023 4.023 26 O -0.319 6.319 27 C -0.010 4.010 28 H 0.015 0.985 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.056 0.944 48 H 0.055 0.945 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.693 -25.068 -0.342 26.534 hybrid contribution 0.014 1.833 0.667 1.950 sum 8.707 -23.235 0.325 24.815 Atomic orbital electron populations 1.20488 0.82458 0.96252 0.97215 1.44174 1.02234 1.01006 1.85850 1.19514 0.97946 0.86742 1.35675 0.91726 1.25808 0.98568 1.01930 0.98484 1.70238 1.19665 1.27560 1.40960 0.85294 0.77466 0.79327 0.78079 1.19921 1.21725 1.20660 1.20781 0.94541 0.85313 0.93448 0.94332 1.21919 1.00637 0.96494 0.97101 1.21900 0.99973 0.95259 0.99069 1.22123 1.03482 0.93938 0.82311 1.48405 1.48762 1.17793 1.19474 1.21515 0.77883 0.89754 0.81835 1.90695 1.62519 1.60300 1.33545 1.21877 1.00603 0.93332 1.00286 1.21946 0.87757 0.89556 0.96758 0.94208 1.22186 1.01147 0.94835 0.99706 1.21621 0.96999 0.99605 0.97891 1.22161 0.98731 0.94311 1.03531 1.22642 0.93747 0.98336 0.87537 1.87959 1.42702 1.57458 1.43757 1.21895 0.96282 0.83394 0.99397 0.98495 0.96283 0.94512 0.94215 0.91710 0.92711 0.87174 0.92212 0.89692 0.85949 0.83628 0.86038 0.88453 0.89933 0.89367 0.92196 0.90864 0.89621 0.89326 0.94438 0.94456 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.21 7.91 127.77 1.01 10.22 16 2 N -0.61 -32.13 2.82 -702.36 -1.98 -34.11 16 3 C -0.27 -15.71 9.60 84.03 0.81 -14.91 16 4 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 5 C -0.05 -3.12 5.11 84.86 0.43 -2.69 16 6 N -0.94 -58.09 10.63 21.65 0.23 -57.86 16 7 Si 0.97 47.43 29.57 68.60 2.03 49.46 16 8 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 9 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 11 C 0.17 7.17 2.74 45.07 0.12 7.30 16 12 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 13 C -0.12 -3.88 5.13 30.62 0.16 -3.72 16 14 C -0.12 -2.61 6.08 30.67 0.19 -2.43 16 15 C 0.10 1.96 6.34 86.36 0.55 2.50 16 16 N -0.61 -19.03 2.97 -818.72 -2.43 -21.46 16 17 C 0.50 16.42 7.58 87.66 0.66 17.09 16 18 O -0.59 -26.51 14.84 10.71 0.16 -26.35 16 19 C -0.12 -2.40 3.76 29.85 0.11 -2.28 16 20 C 0.10 2.19 2.19 30.62 0.07 2.26 16 21 H 0.04 1.06 7.96 -2.38 -0.02 1.04 16 22 C -0.14 -1.88 5.42 30.69 0.17 -1.72 16 23 C -0.12 -1.61 6.03 30.71 0.19 -1.42 16 24 C -0.15 -2.30 6.14 30.68 0.19 -2.12 16 25 C 0.05 1.25 6.84 72.01 0.49 1.74 16 26 O -0.40 -11.63 9.64 -135.21 -1.30 -12.93 16 27 C 0.12 4.83 5.79 86.35 0.50 5.33 16 28 H 0.00 -0.19 7.41 -2.39 -0.02 -0.20 16 29 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 30 H 0.04 1.55 6.46 -2.39 -0.02 1.54 16 31 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.06 1.98 6.71 -2.38 -0.02 1.97 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.32 5.94 -2.38 -0.01 1.31 16 38 H 0.15 1.60 7.94 -2.39 -0.02 1.58 16 39 H 0.12 1.91 7.70 -2.39 -0.02 1.89 16 40 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.04 1.93 7.01 -2.39 -0.02 1.91 16 49 H 0.06 2.35 7.51 -2.39 -0.02 2.33 16 Total: -1.00 -81.18 371.97 3.25 -77.93 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 0.90 Total: 10.17 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.64 Total: 15.15 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -4.18 Total: -113.43 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.14 Total: -39.28 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -81.18 3.25 -77.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027359239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.365 kcal (2) G-P(sol) polarization free energy of solvation -81.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds