Wall clock time and date at job start Fri Apr 10 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99831 * 2 1 4 4 H 1.08001 * 119.99699 * 203.00852 * 3 2 1 5 5 C 1.38813 * 120.00144 * 23.00673 * 3 2 1 6 6 N 1.31619 * 119.99919 * 11.63587 * 5 3 2 7 7 Si 1.86802 * 119.99912 * 191.63923 * 5 3 2 8 8 H 1.48503 * 109.46885 * 60.00026 * 7 5 3 9 9 H 1.48496 * 109.47335 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47241 * 300.00304 * 7 5 3 11 11 C 1.46492 * 119.99769 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49793 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49836 * 60.00235 * 11 2 1 14 14 C 1.53045 * 109.53533 * 178.68163 * 13 11 2 15 15 C 1.53188 * 109.31410 * 61.36659 * 14 13 11 16 16 N 1.46929 * 108.77466 * 305.36405 * 15 14 13 17 17 C 1.34785 * 120.62854 * 233.58959 * 16 15 14 18 18 O 1.21277 * 119.99566 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00084 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46855 * 180.02562 * 19 17 16 21 21 H 1.08993 * 109.52178 * 305.12489 * 20 19 17 22 22 C 1.53184 * 109.51871 * 184.99910 * 20 19 17 23 23 C 1.53176 * 109.03299 * 183.11459 * 22 20 19 24 24 C 1.53094 * 109.21482 * 56.95261 * 23 22 20 25 25 O 1.42902 * 109.40885 * 302.48890 * 24 23 22 26 26 C 1.42904 * 114.15855 * 61.06063 * 25 24 23 27 27 C 1.46923 * 118.73860 * 53.85790 * 16 15 14 28 28 H 1.09003 * 109.47034 * 273.85357 * 1 2 3 29 29 H 1.09009 * 109.47289 * 33.85269 * 1 2 3 30 30 H 1.08998 * 109.47539 * 153.85023 * 1 2 3 31 31 H 0.96998 * 119.99767 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46077 * 58.66264 * 13 11 2 33 33 H 1.09003 * 109.44532 * 298.69224 * 13 11 2 34 34 H 1.08996 * 109.49779 * 301.40758 * 14 13 11 35 35 H 1.09009 * 109.52262 * 181.33011 * 14 13 11 36 36 H 1.09003 * 109.58861 * 185.57551 * 15 14 13 37 37 H 1.08998 * 109.70842 * 65.21696 * 15 14 13 38 38 H 1.09001 * 109.47055 * 60.00075 * 19 17 16 39 39 H 1.08994 * 109.47152 * 300.00633 * 19 17 16 40 40 H 1.09001 * 109.54149 * 63.24903 * 22 20 19 41 41 H 1.08994 * 109.61983 * 303.02791 * 22 20 19 42 42 H 1.08999 * 109.52352 * 176.89058 * 23 22 20 43 43 H 1.09003 * 109.52610 * 297.01372 * 23 22 20 44 44 H 1.08998 * 109.47828 * 62.40287 * 24 23 22 45 45 H 1.09002 * 109.48058 * 182.43794 * 24 23 22 46 46 H 1.08998 * 109.48022 * 178.89090 * 26 25 24 47 47 H 1.09003 * 109.47853 * 58.85129 * 26 25 24 48 48 H 1.08996 * 109.58697 * 65.93018 * 27 16 15 49 49 H 1.09003 * 109.58377 * 186.35656 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1652 1.2231 -0.3656 5 6 1.5384 2.3403 0.4698 6 7 0.3980 2.2622 1.1224 7 14 2.3343 4.0045 0.1759 8 1 2.4679 4.2382 -1.2845 9 1 1.4887 5.0698 0.7718 10 1 3.6787 4.0285 0.8060 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8282 -2.0722 -1.2484 14 6 2.6176 -3.3833 -1.2654 15 6 2.2496 -4.2123 -0.0309 16 7 2.4652 -3.3936 1.1699 17 6 3.2357 -3.8450 2.1795 18 8 3.4064 -3.1595 3.1653 19 6 3.8851 -5.2015 2.0834 20 6 4.6976 -5.4689 3.3519 21 1 5.4069 -4.6562 3.5083 22 6 5.4579 -6.7905 3.2036 23 6 6.2050 -7.0861 4.5078 24 6 5.2040 -7.1184 5.6657 25 8 4.5086 -5.8715 5.7272 26 6 3.7537 -5.5643 4.5534 27 6 1.8202 -2.0761 1.2519 28 1 -0.3633 0.0691 1.0254 29 1 -0.3634 0.8535 -0.5725 30 1 -0.3634 -0.9224 -0.4529 31 1 -0.0293 3.0688 1.4504 32 1 2.0698 -1.4914 -2.1385 33 1 0.7605 -2.2913 -1.2365 34 1 3.6854 -3.1652 -1.2522 35 1 2.3721 -3.9447 -2.1670 36 1 2.8801 -5.1003 0.0142 37 1 1.2026 -4.5100 -0.0868 38 1 4.5452 -5.2277 1.2164 39 1 3.1156 -5.9660 1.9772 40 1 6.1723 -6.7102 2.3843 41 1 4.7540 -7.5963 2.9960 42 1 6.7042 -8.0519 4.4308 43 1 6.9455 -6.3068 4.6881 44 1 4.4886 -7.9250 5.5052 45 1 5.7365 -7.2855 6.6020 46 1 3.2414 -4.6119 4.6896 47 1 3.0194 -6.3505 4.3773 48 1 0.7384 -2.2011 1.2970 49 1 2.1674 -1.5541 2.1436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027684287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:12 Heat of formation + Delta-G solvation = -70.854892 kcal Electronic energy + Delta-G solvation = -27068.125537 eV Core-core repulsion = 23416.310591 eV Total energy + Delta-G solvation = -3651.814946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31336 -39.15550 -37.41558 -35.07523 -34.50868 -32.42611 -32.15055 -31.23635 -29.11101 -27.58277 -25.99246 -25.15363 -24.87151 -23.60642 -22.53719 -21.65487 -20.30251 -19.43312 -18.49974 -17.01940 -16.70598 -16.43925 -16.13409 -15.62926 -15.32585 -14.97269 -14.58147 -14.41530 -14.15165 -14.06101 -13.67075 -13.59692 -12.94684 -12.79991 -12.76053 -12.62906 -12.46090 -12.34894 -11.85620 -11.80941 -11.40082 -11.23012 -11.07535 -11.04861 -10.89757 -10.77553 -10.60876 -10.42847 -10.39048 -10.33930 -10.17845 -9.84506 -9.75091 -9.56335 -9.38364 -8.56450 -8.28884 -6.73724 -5.70849 -3.17500 2.84164 3.21651 3.41703 3.46288 3.47280 3.82399 4.42775 4.50465 4.53155 4.61409 4.73449 4.83864 4.90117 4.98851 5.12017 5.20345 5.25631 5.30177 5.33914 5.39418 5.43178 5.45932 5.53567 5.58497 5.60449 5.68864 5.75752 5.79777 5.83913 5.91593 6.00606 6.11861 6.16556 6.20607 6.23770 6.38181 6.51206 6.69594 6.79018 6.94053 6.99940 7.14947 7.39247 7.70281 7.73294 7.82495 8.40099 8.45320 9.25160 9.87505 10.36178 11.33986 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.003147 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.488671 B = 8894.355525 C = 9651.703219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.108 3.892 16 N -0.608 5.608 17 C 0.506 3.494 18 O -0.537 6.537 19 C -0.134 4.134 20 C -0.107 4.107 21 H 0.089 0.911 22 C -0.118 4.118 23 C -0.156 4.156 24 C 0.057 3.943 25 O -0.379 6.379 26 C 0.062 3.938 27 C 0.098 3.902 28 H 0.028 0.972 29 H 0.044 0.956 30 H -0.002 1.002 31 H 0.253 0.747 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.042 0.958 48 H 0.060 0.940 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -22.243 -0.302 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.341 5.341 17 C 0.294 3.706 18 O -0.415 6.415 19 C -0.174 4.174 20 C -0.126 4.126 21 H 0.107 0.893 22 C -0.155 4.155 23 C -0.193 4.193 24 C -0.020 4.020 25 O -0.298 6.298 26 C -0.014 4.014 27 C -0.026 4.026 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.017 0.983 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.132 0.868 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.573 -21.563 0.458 22.548 hybrid contribution 0.276 0.708 -0.538 0.931 sum 6.849 -20.856 -0.080 21.952 Atomic orbital electron populations 1.20791 0.82604 0.95643 0.99227 1.43925 1.01842 1.00035 1.85539 1.19175 0.98381 0.85363 1.35745 0.91480 1.25046 0.97777 0.98593 0.98050 1.70052 1.18445 1.27358 1.39261 0.86312 0.78600 0.83692 0.77788 1.21107 1.21613 1.20881 1.20707 0.96390 0.86184 0.90723 0.91805 1.22091 0.99631 0.94971 1.00630 1.21902 1.01027 0.97319 0.96733 1.21727 1.01246 0.93539 0.85050 1.48341 1.48987 1.19285 1.17521 1.20610 0.78924 0.88237 0.82812 1.90694 1.61352 1.58516 1.30891 1.21706 1.00391 0.95466 0.99806 1.21561 0.98349 0.98386 0.94342 0.89271 1.21657 0.99269 0.96928 0.97675 1.22179 0.99091 1.02430 0.95627 1.22567 0.94024 0.86666 0.98752 1.87992 1.65202 1.38183 1.38403 1.22879 0.92236 1.02083 0.84230 1.22623 0.96536 0.81072 1.02374 0.95363 0.93698 0.98321 0.93653 0.91745 0.92273 0.91773 0.91308 0.90407 0.91567 0.88721 0.89156 0.91359 0.91830 0.91041 0.90935 0.93536 0.89191 0.86777 0.94012 0.92181 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 7.91 59.85 0.47 4.41 16 2 N -0.59 -14.74 2.82 -173.09 -0.49 -15.22 16 3 C -0.26 -7.13 9.59 -15.06 -0.14 -7.27 16 4 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 5 C 0.00 0.11 5.12 -17.43 -0.09 0.02 16 6 N -0.91 -26.67 10.64 55.49 0.59 -26.08 16 7 Si 0.91 22.19 29.57 -169.99 -5.03 17.16 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.44 2.76 -67.59 -0.19 3.25 16 12 H 0.06 1.38 7.87 -51.93 -0.41 0.98 16 13 C -0.13 -2.16 5.13 -26.69 -0.14 -2.30 16 14 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 15 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 16 N -0.61 -9.21 2.97 -172.51 -0.51 -9.72 16 17 C 0.51 7.72 7.43 -10.98 -0.08 7.64 16 18 O -0.54 -10.49 13.40 5.56 0.07 -10.42 16 19 C -0.13 -1.38 3.53 -27.88 -0.10 -1.47 16 20 C -0.11 -1.19 2.03 -90.48 -0.18 -1.37 16 21 H 0.09 1.20 7.95 -51.93 -0.41 0.78 16 22 C -0.12 -0.97 5.31 -26.55 -0.14 -1.11 16 23 C -0.16 -1.26 6.13 -26.59 -0.16 -1.43 16 24 C 0.06 0.53 6.85 37.21 0.25 0.78 16 25 O -0.38 -5.05 10.76 -35.23 -0.38 -5.43 16 26 C 0.06 0.78 5.84 37.20 0.22 1.00 16 27 C 0.10 1.88 5.81 -3.49 -0.02 1.86 16 28 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 29 H 0.04 1.18 7.22 -51.92 -0.37 0.80 16 30 H 0.00 -0.03 6.46 -51.93 -0.34 -0.37 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 39 H 0.09 0.74 7.94 -51.93 -0.41 0.33 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.11 1.77 6.04 -51.93 -0.31 1.46 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 49 H 0.09 2.11 7.00 -51.93 -0.36 1.75 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -32.32 368.80 -9.32 -41.64 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.65 Total: -0.97 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.48 Total: 3.48 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.41 Total: -51.02 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.30 Total: -15.84 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.32 -9.32 -41.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027684287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.216 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds