Wall clock time and date at job start Fri Apr 10 2020 22:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99831 * 2 1 4 4 H 1.08001 * 119.99699 * 203.00852 * 3 2 1 5 5 C 1.38813 * 120.00144 * 23.00673 * 3 2 1 6 6 N 1.31619 * 119.99919 * 11.63587 * 5 3 2 7 7 Si 1.86802 * 119.99912 * 191.63923 * 5 3 2 8 8 H 1.48503 * 109.46885 * 60.00026 * 7 5 3 9 9 H 1.48496 * 109.47335 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47241 * 300.00304 * 7 5 3 11 11 C 1.46492 * 119.99769 * 179.97438 * 2 1 3 12 12 H 1.09000 * 109.49793 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49836 * 60.00235 * 11 2 1 14 14 C 1.53045 * 109.53533 * 178.68163 * 13 11 2 15 15 C 1.53188 * 109.31410 * 61.36659 * 14 13 11 16 16 N 1.46929 * 108.77466 * 305.36405 * 15 14 13 17 17 C 1.34785 * 120.62854 * 233.58959 * 16 15 14 18 18 O 1.21277 * 119.99566 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00084 * 359.97438 * 17 16 15 20 20 C 1.53000 * 109.46855 * 180.02562 * 19 17 16 21 21 H 1.08993 * 109.52178 * 305.12489 * 20 19 17 22 22 C 1.53184 * 109.51871 * 184.99910 * 20 19 17 23 23 C 1.53176 * 109.03299 * 183.11459 * 22 20 19 24 24 C 1.53094 * 109.21482 * 56.95261 * 23 22 20 25 25 O 1.42902 * 109.40885 * 302.48890 * 24 23 22 26 26 C 1.42904 * 114.15855 * 61.06063 * 25 24 23 27 27 C 1.46923 * 118.73860 * 53.85790 * 16 15 14 28 28 H 1.09003 * 109.47034 * 273.85357 * 1 2 3 29 29 H 1.09009 * 109.47289 * 33.85269 * 1 2 3 30 30 H 1.08998 * 109.47539 * 153.85023 * 1 2 3 31 31 H 0.96998 * 119.99767 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.46077 * 58.66264 * 13 11 2 33 33 H 1.09003 * 109.44532 * 298.69224 * 13 11 2 34 34 H 1.08996 * 109.49779 * 301.40758 * 14 13 11 35 35 H 1.09009 * 109.52262 * 181.33011 * 14 13 11 36 36 H 1.09003 * 109.58861 * 185.57551 * 15 14 13 37 37 H 1.08998 * 109.70842 * 65.21696 * 15 14 13 38 38 H 1.09001 * 109.47055 * 60.00075 * 19 17 16 39 39 H 1.08994 * 109.47152 * 300.00633 * 19 17 16 40 40 H 1.09001 * 109.54149 * 63.24903 * 22 20 19 41 41 H 1.08994 * 109.61983 * 303.02791 * 22 20 19 42 42 H 1.08999 * 109.52352 * 176.89058 * 23 22 20 43 43 H 1.09003 * 109.52610 * 297.01372 * 23 22 20 44 44 H 1.08998 * 109.47828 * 62.40287 * 24 23 22 45 45 H 1.09002 * 109.48058 * 182.43794 * 24 23 22 46 46 H 1.08998 * 109.48022 * 178.89090 * 26 25 24 47 47 H 1.09003 * 109.47853 * 58.85129 * 26 25 24 48 48 H 1.08996 * 109.58697 * 65.93018 * 27 16 15 49 49 H 1.09003 * 109.58377 * 186.35656 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1652 1.2231 -0.3656 5 6 1.5384 2.3403 0.4698 6 7 0.3980 2.2622 1.1224 7 14 2.3343 4.0045 0.1759 8 1 2.4679 4.2382 -1.2845 9 1 1.4887 5.0698 0.7718 10 1 3.6787 4.0285 0.8060 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8282 -2.0722 -1.2484 14 6 2.6176 -3.3833 -1.2654 15 6 2.2496 -4.2123 -0.0309 16 7 2.4652 -3.3936 1.1699 17 6 3.2357 -3.8450 2.1795 18 8 3.4064 -3.1595 3.1653 19 6 3.8851 -5.2015 2.0834 20 6 4.6976 -5.4689 3.3519 21 1 5.4069 -4.6562 3.5083 22 6 5.4579 -6.7905 3.2036 23 6 6.2050 -7.0861 4.5078 24 6 5.2040 -7.1184 5.6657 25 8 4.5086 -5.8715 5.7272 26 6 3.7537 -5.5643 4.5534 27 6 1.8202 -2.0761 1.2519 28 1 -0.3633 0.0691 1.0254 29 1 -0.3634 0.8535 -0.5725 30 1 -0.3634 -0.9224 -0.4529 31 1 -0.0293 3.0688 1.4504 32 1 2.0698 -1.4914 -2.1385 33 1 0.7605 -2.2913 -1.2365 34 1 3.6854 -3.1652 -1.2522 35 1 2.3721 -3.9447 -2.1670 36 1 2.8801 -5.1003 0.0142 37 1 1.2026 -4.5100 -0.0868 38 1 4.5452 -5.2277 1.2164 39 1 3.1156 -5.9660 1.9772 40 1 6.1723 -6.7102 2.3843 41 1 4.7540 -7.5963 2.9960 42 1 6.7042 -8.0519 4.4308 43 1 6.9455 -6.3068 4.6881 44 1 4.4886 -7.9250 5.5052 45 1 5.7365 -7.2855 6.6020 46 1 3.2414 -4.6119 4.6896 47 1 3.0194 -6.3505 4.3773 48 1 0.7384 -2.2011 1.2970 49 1 2.1674 -1.5541 2.1436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027684287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:11 Heat of formation + Delta-G solvation = -91.800794 kcal Electronic energy + Delta-G solvation = -27069.033820 eV Core-core repulsion = 23416.310591 eV Total energy + Delta-G solvation = -3652.723229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44349 -40.14171 -38.82579 -36.76141 -35.40222 -33.97852 -32.98114 -32.77662 -30.67704 -28.62869 -28.06420 -26.08255 -25.92324 -25.25900 -23.46855 -23.02747 -21.16882 -20.81959 -19.75168 -18.78508 -18.11048 -17.33222 -17.09528 -16.94417 -16.77145 -16.25856 -15.74210 -15.64123 -15.24574 -15.20566 -15.18478 -14.89356 -14.39133 -14.05816 -14.02026 -13.75067 -13.50451 -13.46155 -13.35879 -12.95427 -12.81770 -12.65004 -12.49645 -12.23332 -12.18896 -12.09378 -12.08447 -11.90446 -11.75075 -11.71772 -11.53515 -11.39015 -11.22950 -10.66078 -10.64057 -10.35068 -9.63994 -8.77028 -7.86134 -5.35096 1.42712 1.45127 1.51831 1.68165 2.03975 2.48731 2.99908 3.27380 3.51575 3.62718 3.79305 3.85359 3.95490 4.03151 4.06828 4.12039 4.16151 4.25059 4.31278 4.37537 4.39045 4.56627 4.60354 4.64879 4.68485 4.74042 4.78320 4.81143 4.88740 4.92291 4.96605 5.00056 5.06645 5.12226 5.13986 5.18240 5.25383 5.31039 5.43255 5.44946 5.53284 5.57322 5.61838 5.69698 6.30150 6.32607 6.54212 7.12155 7.26400 7.84354 8.26771 9.16499 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019102 B = 0.003147 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.488671 B = 8894.355525 C = 9651.703219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.268 4.268 4 H 0.066 0.934 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.970 3.030 8 H -0.273 1.273 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.123 4.123 14 C -0.123 4.123 15 C 0.102 3.898 16 N -0.608 5.608 17 C 0.496 3.504 18 O -0.593 6.593 19 C -0.120 4.120 20 C -0.105 4.105 21 H 0.053 0.947 22 C -0.111 4.111 23 C -0.155 4.155 24 C 0.048 3.952 25 O -0.414 6.414 26 C 0.062 3.938 27 C 0.114 3.886 28 H -0.004 1.004 29 H 0.018 0.982 30 H 0.036 0.964 31 H 0.249 0.751 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -26.237 -2.657 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.398 4.398 4 H 0.084 0.916 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.798 3.202 8 H -0.199 1.199 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.059 3.941 12 H 0.060 0.940 13 C -0.163 4.163 14 C -0.161 4.161 15 C -0.019 4.019 16 N -0.341 5.341 17 C 0.287 3.713 18 O -0.474 6.474 19 C -0.159 4.159 20 C -0.124 4.124 21 H 0.071 0.929 22 C -0.148 4.148 23 C -0.192 4.192 24 C -0.028 4.028 25 O -0.333 6.333 26 C -0.015 4.015 27 C -0.012 4.012 28 H 0.015 0.985 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.676 -25.625 -1.940 26.820 hybrid contribution -0.021 1.893 0.263 1.911 sum 7.655 -23.732 -1.677 24.993 Atomic orbital electron populations 1.20484 0.82573 0.96238 0.97150 1.44163 1.02184 1.01070 1.85838 1.19503 0.98475 0.86877 1.34977 0.91626 1.25831 0.98568 1.02016 0.98357 1.70229 1.19837 1.27719 1.40613 0.85302 0.77510 0.79369 0.78029 1.19923 1.21850 1.20599 1.20874 0.94646 0.85203 0.93327 0.94000 1.21930 1.00598 0.96579 0.97165 1.21893 1.00102 0.95144 0.98979 1.22135 1.03469 0.93978 0.82319 1.48408 1.48504 1.17858 1.19339 1.21681 0.78160 0.89809 0.81685 1.90690 1.63048 1.60499 1.33170 1.21766 1.01306 0.92381 1.00442 1.21497 0.97656 0.99207 0.94043 0.92870 1.21655 0.99686 0.95363 0.98094 1.22188 0.98504 1.03349 0.95202 1.22841 0.94571 0.85404 1.00025 1.87936 1.65876 1.40479 1.39056 1.22765 0.93035 1.00732 0.84953 1.21994 0.96242 0.83421 0.99503 0.98526 0.96331 0.94578 0.94232 0.92727 0.91900 0.91889 0.87291 0.85787 0.89935 0.85502 0.85439 0.89648 0.89397 0.88244 0.92604 0.91783 0.88356 0.90995 0.91853 0.92619 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 7.91 127.77 1.01 10.09 16 2 N -0.61 -31.49 2.82 -701.53 -1.98 -33.47 16 3 C -0.27 -15.41 9.59 84.03 0.81 -14.60 16 4 H 0.07 3.69 7.82 -2.91 -0.02 3.67 16 5 C -0.05 -3.07 5.12 84.86 0.43 -2.63 16 6 N -0.94 -57.64 10.64 21.65 0.23 -57.41 16 7 Si 0.97 46.94 29.57 68.60 2.03 48.96 16 8 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 C 0.17 6.93 2.76 45.21 0.12 7.06 16 12 H 0.04 1.88 7.87 -2.39 -0.02 1.87 16 13 C -0.12 -3.76 5.13 30.62 0.16 -3.60 16 14 C -0.12 -2.40 6.08 30.67 0.19 -2.21 16 15 C 0.10 1.78 6.34 86.36 0.55 2.33 16 16 N -0.61 -17.69 2.97 -818.07 -2.43 -20.12 16 17 C 0.50 14.89 7.43 87.66 0.65 15.54 16 18 O -0.59 -24.74 13.40 -3.02 -0.04 -24.78 16 19 C -0.12 -2.03 3.53 29.85 0.11 -1.93 16 20 C -0.10 -2.15 2.03 -10.70 -0.02 -2.17 16 21 H 0.05 1.47 7.95 -2.39 -0.02 1.45 16 22 C -0.11 -1.37 5.31 30.71 0.16 -1.21 16 23 C -0.15 -2.10 6.13 30.68 0.19 -1.91 16 24 C 0.05 0.80 6.85 72.01 0.49 1.30 16 25 O -0.41 -11.15 10.76 -148.98 -1.60 -12.75 16 26 C 0.06 1.55 5.84 72.01 0.42 1.97 16 27 C 0.11 4.56 5.81 86.51 0.50 5.07 16 28 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 29 H 0.02 0.99 7.22 -2.38 -0.02 0.97 16 30 H 0.04 1.51 6.46 -2.39 -0.02 1.49 16 31 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.87 6.71 -2.39 -0.02 1.86 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.12 1.12 5.93 -2.39 -0.01 1.10 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.13 1.43 7.69 -2.39 -0.02 1.41 16 39 H 0.13 1.32 7.94 -2.39 -0.02 1.30 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 2.41 6.04 -2.39 -0.01 2.40 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.06 2.24 7.53 -2.39 -0.02 2.23 16 49 H 0.04 1.98 7.00 -2.39 -0.02 1.96 16 Total: -1.00 -79.37 368.80 2.89 -76.48 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.91 Total: 9.99 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 5.77 Total: 13.09 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -4.17 Total: -111.00 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -1.64 Total: -37.53 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.96 kcal Total: -79.37 2.89 -76.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027684287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.318 kcal (2) G-P(sol) polarization free energy of solvation -79.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds