Wall clock time and date at job start Fri Apr 10 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47412 * 89.99489 * 3 2 1 5 5 C 1.52999 * 109.47592 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46626 * 300.00035 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99707 * 359.97438 * 9 7 6 11 11 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 12 12 H 1.09005 * 110.64003 * 0.70163 * 11 9 7 13 13 C 1.55150 * 110.72110 * 237.55594 * 11 9 7 14 14 C 1.55384 * 101.36539 * 277.04403 * 13 11 9 15 15 N 1.47421 * 104.87372 * 323.01267 * 14 13 11 16 16 C 1.36941 * 125.65076 * 204.09442 * 15 14 13 17 17 H 1.07997 * 119.99837 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99842 * 0.04875 * 16 15 14 19 19 N 1.31625 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47104 * 120.00230 * 20 18 16 23 23 H 1.48501 * 109.47169 * 239.99731 * 20 18 16 24 24 C 1.47020 * 108.70514 * 24.13680 * 15 14 13 25 25 C 1.52997 * 109.47164 * 59.99702 * 6 5 4 26 26 C 1.52996 * 109.46885 * 209.99574 * 3 2 1 27 27 H 1.09001 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47534 * 300.00619 * 1 2 3 29 29 H 1.09007 * 109.46768 * 60.00549 * 1 2 3 30 30 H 1.09000 * 109.47075 * 329.99317 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99868 * 4 3 2 32 32 H 1.09002 * 109.47045 * 299.99961 * 4 3 2 33 33 H 1.08993 * 109.47839 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47160 * 59.99666 * 5 4 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 36 36 H 1.09002 * 109.47085 * 90.00762 * 10 9 7 37 37 H 1.09002 * 109.46740 * 210.00435 * 10 9 7 38 38 H 1.09001 * 109.47266 * 330.00158 * 10 9 7 39 39 H 1.09002 * 111.00277 * 35.21542 * 13 11 9 40 40 H 1.08999 * 111.00559 * 159.06238 * 13 11 9 41 41 H 1.09000 * 110.34004 * 204.16954 * 14 13 11 42 42 H 1.09000 * 110.35323 * 81.87442 * 14 13 11 43 43 H 0.96993 * 120.00044 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.88299 * 239.52296 * 24 15 14 45 45 H 1.08997 * 110.01422 * 118.42468 * 24 15 14 46 46 H 1.09000 * 109.47140 * 60.00051 * 25 6 5 47 47 H 1.09001 * 109.47230 * 179.97438 * 25 6 5 48 48 H 1.08992 * 109.47534 * 60.00076 * 26 3 2 49 49 H 1.08996 * 109.47134 * 299.99271 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2177 1.7714 1.4424 5 6 2.8394 3.1693 1.4425 6 6 4.1881 3.1276 0.7211 7 6 4.8003 4.5046 0.7206 8 8 4.2153 5.4285 1.2451 9 7 5.9975 4.7096 0.1364 10 6 6.7038 3.5937 -0.4976 11 6 6.5929 6.0482 0.1363 12 1 5.9480 6.7556 0.6577 13 6 6.8718 6.5249 -1.3135 14 6 8.2385 5.8443 -1.6021 15 7 8.9717 5.9111 -0.3249 16 6 10.3333 5.8763 -0.1836 17 1 10.7756 5.9314 0.8001 18 6 11.1450 5.7706 -1.3046 19 7 10.6059 5.7034 -2.5035 20 14 13.0024 5.7238 -1.1119 21 1 13.3531 5.8149 0.3282 22 1 13.5261 4.4512 -1.6700 23 1 13.6048 6.8689 -1.8408 24 6 7.9989 6.0204 0.7720 25 6 3.9808 2.6615 -0.7213 26 6 3.3590 1.2630 -0.7211 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.3451 1.9993 -0.5139 31 1 2.8828 1.0775 1.9564 32 1 1.2568 1.8016 1.9562 33 1 2.9876 3.5012 2.4701 34 1 2.1739 3.8630 0.9287 35 1 4.8536 2.4339 1.2349 36 1 6.4092 3.5251 -1.5448 37 1 7.7790 3.7606 -0.4329 38 1 6.4489 2.6651 0.0132 39 1 6.1016 6.1677 -1.9972 40 1 6.9584 7.6105 -1.3580 41 1 8.7769 6.3892 -2.3775 42 1 8.0897 4.8065 -1.9004 43 1 11.1731 5.6292 -3.2868 44 1 8.1716 6.9404 1.3303 45 1 8.0883 5.1612 1.4368 46 1 3.3153 3.3552 -1.2351 47 1 4.9415 2.6322 -1.2354 48 1 3.2113 0.9311 -1.7487 49 1 4.0242 0.5692 -0.2072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033382852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:36 Heat of formation + Delta-G solvation = -56.341384 kcal Electronic energy + Delta-G solvation = -27271.681457 eV Core-core repulsion = 23620.495864 eV Total energy + Delta-G solvation = -3651.185593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.50610 -38.98348 -37.53743 -36.19297 -34.45607 -32.23276 -30.95958 -30.43309 -29.12021 -27.89024 -26.85923 -26.16503 -24.47616 -23.12383 -22.83101 -20.81194 -20.21640 -19.85739 -18.58700 -17.06974 -16.89732 -16.85830 -16.16155 -15.75240 -15.37021 -15.03385 -14.71636 -14.25301 -14.08707 -13.94061 -13.75920 -13.37314 -12.90703 -12.82543 -12.48697 -12.38691 -12.22093 -12.13321 -11.81703 -11.75357 -11.57721 -11.47859 -11.22558 -11.11911 -11.06600 -10.93067 -10.83307 -10.74904 -10.50757 -10.27052 -10.12125 -9.87782 -9.65817 -9.56794 -9.30085 -8.69469 -8.23423 -6.88196 -5.69916 -3.11921 2.83953 3.27001 3.36848 3.43160 3.45080 3.48807 4.43153 4.45597 4.50282 4.60473 4.86601 4.93425 5.00849 5.08261 5.10248 5.14360 5.22751 5.29523 5.35801 5.40867 5.43192 5.46308 5.51315 5.61393 5.62751 5.71818 5.78019 5.84076 5.87124 5.90213 5.96238 5.96617 6.09902 6.21202 6.26329 6.30777 6.37180 6.55249 6.59151 6.71035 6.96061 7.03962 7.43919 7.59306 7.74579 7.81538 8.31256 8.43174 9.17603 9.77959 10.42341 11.33551 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002972 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.413909 B = 9417.683072 C = 9898.588252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.087 3.913 4 C -0.139 4.139 5 C -0.094 4.094 6 C -0.106 4.106 7 C 0.515 3.485 8 O -0.552 6.552 9 N -0.592 5.592 10 C 0.069 3.931 11 C 0.125 3.875 12 H 0.098 0.902 13 C -0.155 4.155 14 C 0.146 3.854 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.127 3.873 25 C -0.121 4.121 26 C -0.112 4.112 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.021 0.979 43 H 0.251 0.749 44 H 0.032 0.968 45 H 0.026 0.974 46 H 0.068 0.932 47 H 0.090 0.910 48 H 0.072 0.928 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.872 -9.329 3.160 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C 0.029 3.971 4 C -0.177 4.177 5 C -0.132 4.132 6 C -0.127 4.127 7 C 0.303 3.697 8 O -0.431 6.431 9 N -0.323 5.323 10 C -0.074 4.074 11 C 0.021 3.979 12 H 0.116 0.884 13 C -0.195 4.195 14 C 0.022 3.978 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.000 4.000 25 C -0.159 4.159 26 C -0.150 4.150 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.039 0.961 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.108 0.892 48 H 0.091 0.909 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -17.851 -9.020 3.313 20.273 hybrid contribution 0.804 0.104 0.077 0.814 sum -17.047 -8.916 3.390 19.535 Atomic orbital electron populations 1.22767 0.81366 1.02530 0.99907 1.87905 1.19415 1.28166 1.95093 1.22230 0.95058 0.84117 0.95651 1.22045 1.01434 0.97192 0.97036 1.21277 0.94696 0.95920 1.01348 1.21336 0.98233 0.94825 0.98310 1.20589 0.80731 0.90543 0.77790 1.90645 1.61749 1.44678 1.46025 1.47803 1.19046 1.10129 1.55355 1.22206 1.00449 0.87954 0.96792 1.22133 0.94524 0.83068 0.98165 0.88392 1.23429 1.00525 1.00839 0.94671 1.22179 0.87331 0.97688 0.90611 1.44547 1.01273 1.86361 1.00730 1.19117 0.80014 1.42661 0.93197 0.90473 1.24773 0.98183 1.02351 0.95268 1.69807 1.32786 1.57329 0.97076 0.86010 0.85032 0.77239 0.77276 1.20572 1.21767 1.21769 1.21625 0.87899 0.98465 0.91978 1.21802 1.02888 0.96118 0.95068 1.21568 0.95172 0.97245 1.00992 0.89814 0.94129 0.94133 0.92143 0.90969 0.91708 0.90841 0.91210 0.88463 0.92418 0.88168 0.91942 0.92111 0.91154 0.87730 0.96134 0.93782 0.95027 0.95566 0.91351 0.89193 0.90924 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.82 101.05 1.09 1.32 16 2 O -0.39 -3.93 10.35 -35.23 -0.36 -4.30 16 3 C 0.09 0.82 2.61 -26.73 -0.07 0.75 16 4 C -0.14 -1.29 5.54 -26.73 -0.15 -1.44 16 5 C -0.09 -1.03 4.49 -26.73 -0.12 -1.15 16 6 C -0.11 -1.23 1.72 -91.77 -0.16 -1.39 16 7 C 0.52 8.04 7.08 -10.99 -0.08 7.97 16 8 O -0.55 -10.33 15.35 5.56 0.09 -10.24 16 9 N -0.59 -9.61 2.82 -171.83 -0.49 -10.09 16 10 C 0.07 1.02 6.85 59.85 0.41 1.43 16 11 C 0.12 2.29 3.57 -66.10 -0.24 2.06 16 12 H 0.10 1.84 6.99 -51.93 -0.36 1.47 16 13 C -0.16 -2.94 6.60 -24.33 -0.16 -3.10 16 14 C 0.15 3.35 5.03 -2.27 -0.01 3.33 16 15 N -0.60 -14.71 2.93 -169.78 -0.50 -15.21 16 16 C -0.22 -5.97 10.27 -15.06 -0.15 -6.12 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -25.84 10.09 55.49 0.56 -25.28 16 20 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.13 2.65 6.17 -3.06 -0.02 2.63 16 25 C -0.12 -1.24 4.84 -26.71 -0.13 -1.37 16 26 C -0.11 -1.04 5.58 -26.71 -0.15 -1.19 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.26 7.87 -51.93 -0.41 -0.15 16 29 H 0.04 0.26 8.09 -51.92 -0.42 -0.16 16 30 H 0.06 0.54 7.79 -51.93 -0.40 0.14 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.55 7.87 -51.93 -0.41 0.14 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.10 1.05 7.40 -51.93 -0.38 0.67 16 36 H 0.06 0.80 6.71 -51.93 -0.35 0.45 16 37 H 0.10 1.86 5.30 -51.93 -0.28 1.58 16 38 H 0.06 0.75 6.01 -51.93 -0.31 0.44 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.11 2.76 5.87 -51.93 -0.31 2.45 16 42 H 0.02 0.48 5.62 -51.93 -0.29 0.19 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.09 0.93 4.53 -51.93 -0.24 0.69 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -30.29 364.58 -8.60 -38.89 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.34 Total: 0.82 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.03 Total: 3.36 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.42 Total: -50.58 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.28 Total: -14.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.29 -8.60 -38.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033382852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.450 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds