Wall clock time and date at job start Fri Apr 10 2020 22:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00289 * 2 1 4 4 C 1.52997 * 109.47412 * 89.99489 * 3 2 1 5 5 C 1.52999 * 109.47592 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46626 * 300.00035 * 5 4 3 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99707 * 359.97438 * 9 7 6 11 11 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 12 12 H 1.09005 * 110.64003 * 0.70163 * 11 9 7 13 13 C 1.55150 * 110.72110 * 237.55594 * 11 9 7 14 14 C 1.55384 * 101.36539 * 277.04403 * 13 11 9 15 15 N 1.47421 * 104.87372 * 323.01267 * 14 13 11 16 16 C 1.36941 * 125.65076 * 204.09442 * 15 14 13 17 17 H 1.07997 * 119.99837 * 180.02562 * 16 15 14 18 18 C 1.38810 * 119.99842 * 0.04875 * 16 15 14 19 19 N 1.31625 * 120.00203 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00007 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47133 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47104 * 120.00230 * 20 18 16 23 23 H 1.48501 * 109.47169 * 239.99731 * 20 18 16 24 24 C 1.47020 * 108.70514 * 24.13680 * 15 14 13 25 25 C 1.52997 * 109.47164 * 59.99702 * 6 5 4 26 26 C 1.52996 * 109.46885 * 209.99574 * 3 2 1 27 27 H 1.09001 * 109.47473 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47534 * 300.00619 * 1 2 3 29 29 H 1.09007 * 109.46768 * 60.00549 * 1 2 3 30 30 H 1.09000 * 109.47075 * 329.99317 * 3 2 1 31 31 H 1.09000 * 109.47140 * 59.99868 * 4 3 2 32 32 H 1.09002 * 109.47045 * 299.99961 * 4 3 2 33 33 H 1.08993 * 109.47839 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47160 * 59.99666 * 5 4 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 6 5 4 36 36 H 1.09002 * 109.47085 * 90.00762 * 10 9 7 37 37 H 1.09002 * 109.46740 * 210.00435 * 10 9 7 38 38 H 1.09001 * 109.47266 * 330.00158 * 10 9 7 39 39 H 1.09002 * 111.00277 * 35.21542 * 13 11 9 40 40 H 1.08999 * 111.00559 * 159.06238 * 13 11 9 41 41 H 1.09000 * 110.34004 * 204.16954 * 14 13 11 42 42 H 1.09000 * 110.35323 * 81.87442 * 14 13 11 43 43 H 0.96993 * 120.00044 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.88299 * 239.52296 * 24 15 14 45 45 H 1.08997 * 110.01422 * 118.42468 * 24 15 14 46 46 H 1.09000 * 109.47140 * 60.00051 * 25 6 5 47 47 H 1.09001 * 109.47230 * 179.97438 * 25 6 5 48 48 H 1.08992 * 109.47534 * 60.00076 * 26 3 2 49 49 H 1.08996 * 109.47134 * 299.99271 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.2177 1.7714 1.4424 5 6 2.8394 3.1693 1.4425 6 6 4.1881 3.1276 0.7211 7 6 4.8003 4.5046 0.7206 8 8 4.2153 5.4285 1.2451 9 7 5.9975 4.7096 0.1364 10 6 6.7038 3.5937 -0.4976 11 6 6.5929 6.0482 0.1363 12 1 5.9480 6.7556 0.6577 13 6 6.8718 6.5249 -1.3135 14 6 8.2385 5.8443 -1.6021 15 7 8.9717 5.9111 -0.3249 16 6 10.3333 5.8763 -0.1836 17 1 10.7756 5.9314 0.8001 18 6 11.1450 5.7706 -1.3046 19 7 10.6059 5.7034 -2.5035 20 14 13.0024 5.7238 -1.1119 21 1 13.3531 5.8149 0.3282 22 1 13.5261 4.4512 -1.6700 23 1 13.6048 6.8689 -1.8408 24 6 7.9989 6.0204 0.7720 25 6 3.9808 2.6615 -0.7213 26 6 3.3590 1.2630 -0.7211 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.3451 1.9993 -0.5139 31 1 2.8828 1.0775 1.9564 32 1 1.2568 1.8016 1.9562 33 1 2.9876 3.5012 2.4701 34 1 2.1739 3.8630 0.9287 35 1 4.8536 2.4339 1.2349 36 1 6.4092 3.5251 -1.5448 37 1 7.7790 3.7606 -0.4329 38 1 6.4489 2.6651 0.0132 39 1 6.1016 6.1677 -1.9972 40 1 6.9584 7.6105 -1.3580 41 1 8.7769 6.3892 -2.3775 42 1 8.0897 4.8065 -1.9004 43 1 11.1731 5.6292 -3.2868 44 1 8.1716 6.9404 1.3303 45 1 8.0883 5.1612 1.4368 46 1 3.3153 3.3552 -1.2351 47 1 4.9415 2.6322 -1.2354 48 1 3.2113 0.9311 -1.7487 49 1 4.0242 0.5692 -0.2072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033382852.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:36 Heat of formation + Delta-G solvation = -73.754396 kcal Electronic energy + Delta-G solvation = -27272.436542 eV Core-core repulsion = 23620.495864 eV Total energy + Delta-G solvation = -3651.940678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.68652 -39.96092 -38.95666 -37.10484 -36.00176 -34.00740 -31.80147 -31.58277 -30.71915 -29.42797 -27.75346 -27.36316 -26.24148 -24.19241 -23.62607 -22.07159 -21.88526 -20.89391 -19.90804 -18.93147 -18.23874 -17.60483 -17.27492 -16.83399 -16.70533 -16.18005 -16.01562 -15.64831 -15.47210 -14.98720 -14.84728 -14.41100 -14.22489 -14.11158 -13.80108 -13.56656 -13.37158 -13.30123 -13.18743 -12.96476 -12.90660 -12.81724 -12.77371 -12.41214 -12.28706 -12.08260 -11.98419 -11.95477 -11.83421 -11.78027 -11.54791 -11.40337 -11.24690 -10.72273 -10.57298 -10.36101 -9.62033 -8.86046 -7.75337 -5.19182 1.48524 1.49634 1.59179 1.60546 2.00506 2.50745 2.81521 3.35082 3.47516 3.65975 3.70939 3.74193 3.89762 4.01453 4.10870 4.15963 4.21448 4.26789 4.30895 4.38787 4.46431 4.51141 4.55215 4.58456 4.63811 4.64551 4.70066 4.77735 4.81536 4.89727 4.90899 4.93877 5.01165 5.03353 5.09007 5.14258 5.18878 5.23227 5.34751 5.39815 5.47753 5.58322 5.68764 5.84578 6.32046 6.33271 6.47591 7.13236 7.16469 7.78881 8.42681 9.25817 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026054 B = 0.002972 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.413909 B = 9417.683072 C = 9898.588252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.086 3.914 4 C -0.131 4.131 5 C -0.089 4.089 6 C -0.099 4.099 7 C 0.515 3.485 8 O -0.584 6.584 9 N -0.594 5.594 10 C 0.074 3.926 11 C 0.136 3.864 12 H 0.098 0.902 13 C -0.140 4.140 14 C 0.154 3.846 15 N -0.618 5.618 16 C -0.236 4.236 17 H 0.076 0.924 18 C -0.060 4.060 19 N -0.943 5.943 20 Si 0.976 3.024 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.294 1.294 24 C 0.129 3.871 25 C -0.114 4.114 26 C -0.108 4.108 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.017 0.983 43 H 0.247 0.753 44 H 0.029 0.971 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.078 0.922 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.967 -10.642 3.465 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.029 3.971 4 C -0.169 4.169 5 C -0.127 4.127 6 C -0.120 4.120 7 C 0.305 3.695 8 O -0.465 6.465 9 N -0.325 5.325 10 C -0.068 4.068 11 C 0.032 3.968 12 H 0.116 0.884 13 C -0.179 4.179 14 C 0.029 3.971 15 N -0.344 5.344 16 C -0.365 4.365 17 H 0.094 0.906 18 C -0.253 4.253 19 N -0.593 5.593 20 Si 0.805 3.195 21 H -0.196 1.196 22 H -0.218 1.218 23 H -0.221 1.221 24 C 0.002 3.998 25 C -0.152 4.152 26 C -0.145 4.145 27 H 0.114 0.886 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.043 0.957 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.097 0.903 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.967 -10.347 3.633 21.909 hybrid contribution 1.094 0.512 0.019 1.209 sum -17.872 -9.835 3.652 20.724 Atomic orbital electron populations 1.22946 0.80032 1.03625 1.00592 1.87875 1.20970 1.28404 1.95190 1.22233 0.95224 0.84144 0.95532 1.21968 1.01716 0.95888 0.97331 1.21214 0.94192 0.96829 1.00484 1.21377 0.98524 0.92356 0.99725 1.21269 0.80025 0.91736 0.76496 1.90632 1.62464 1.46148 1.47253 1.47841 1.19445 1.09515 1.55669 1.22192 0.98005 0.88626 0.97944 1.21852 0.93112 0.84592 0.97261 0.88378 1.23273 0.98682 1.00555 0.95433 1.21955 0.88640 0.97274 0.89217 1.44728 1.01195 1.86271 1.02238 1.19395 0.81527 1.42288 0.93245 0.90608 1.25510 1.02037 1.02637 0.95115 1.70033 1.33741 1.58102 0.97414 0.85047 0.80292 0.76713 0.77463 1.19591 1.21780 1.22096 1.21676 0.88715 0.98099 0.91275 1.21742 1.03017 0.96679 0.93736 1.21523 0.95133 0.96388 1.01476 0.88621 0.93467 0.93427 0.91788 0.90824 0.90888 0.91805 0.92059 0.87017 0.91253 0.91783 0.88822 0.90159 0.91128 0.91318 0.96494 0.94308 0.95315 0.95670 0.91643 0.89050 0.90298 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.40 -7.29 10.35 -148.98 -1.54 -8.83 16 3 C 0.09 1.41 2.61 30.59 0.08 1.49 16 4 C -0.13 -2.14 5.54 30.59 0.17 -1.97 16 5 C -0.09 -1.79 4.49 30.60 0.14 -1.66 16 6 C -0.10 -2.09 1.72 -11.54 -0.02 -2.11 16 7 C 0.51 15.28 7.08 87.66 0.62 15.90 16 8 O -0.58 -21.29 15.35 -3.04 -0.05 -21.34 16 9 N -0.59 -18.49 2.82 -815.94 -2.30 -20.79 16 10 C 0.07 2.10 6.85 127.77 0.88 2.98 16 11 C 0.14 4.93 3.57 46.18 0.16 5.09 16 12 H 0.10 3.60 6.99 -2.38 -0.02 3.59 16 13 C -0.14 -5.21 6.60 32.15 0.21 -5.00 16 14 C 0.15 7.10 5.03 87.02 0.44 7.54 16 15 N -0.62 -30.53 2.93 -691.05 -2.03 -32.55 16 16 C -0.24 -12.82 10.27 84.03 0.86 -11.96 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 19 N -0.94 -53.82 10.09 21.65 0.22 -53.60 16 20 Si 0.98 44.64 29.55 68.60 2.03 46.67 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 C 0.13 5.37 6.17 86.73 0.53 5.91 16 25 C -0.11 -2.04 4.84 30.61 0.15 -1.90 16 26 C -0.11 -1.71 5.58 30.61 0.17 -1.53 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 0.51 7.87 -2.39 -0.02 0.49 16 29 H 0.05 0.51 8.09 -2.38 -0.02 0.49 16 30 H 0.06 1.00 7.79 -2.39 -0.02 0.98 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.08 7.87 -2.39 -0.02 1.06 16 33 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 34 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.11 2.09 7.40 -2.39 -0.02 2.07 16 36 H 0.07 1.80 6.71 -2.39 -0.02 1.78 16 37 H 0.06 2.34 5.30 -2.39 -0.01 2.33 16 38 H 0.09 2.03 6.01 -2.39 -0.01 2.01 16 39 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.07 3.72 5.87 -2.39 -0.01 3.70 16 42 H 0.02 0.80 5.62 -2.39 -0.01 0.79 16 43 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.03 1.06 7.99 -2.39 -0.02 1.04 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.09 1.63 4.53 -2.39 -0.01 1.62 16 48 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -65.09 364.58 3.34 -61.75 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.92 Total: 17.22 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.09 Total: 11.48 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -4.11 Total: -106.95 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.59 Total: -30.17 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.09 3.34 -61.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033382852.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.001 kcal (2) G-P(sol) polarization free energy of solvation -65.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds