Wall clock time and date at job start Fri Apr 10 2020 22:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99939 * 2 1 4 4 H 1.08999 * 110.54071 * 27.38993 * 3 2 1 5 5 C 1.54268 * 110.48780 * 264.77296 * 3 2 1 6 6 C 1.53873 * 106.59675 * 217.71233 * 5 3 2 7 7 C 1.54264 * 106.60152 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.49036 * 264.93341 * 7 6 5 9 9 C 1.50704 * 110.48701 * 142.28569 * 7 6 5 10 10 O 1.21280 * 120.00039 * 245.22236 * 9 7 6 11 11 N 1.34768 * 119.99956 * 65.22973 * 9 7 6 12 12 C 1.46501 * 120.00219 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.47111 * 324.99549 * 12 11 9 14 14 C 1.53002 * 109.47509 * 84.99348 * 12 11 9 15 15 C 1.52997 * 109.47532 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46864 * 300.00179 * 15 14 12 17 17 H 1.08995 * 109.47400 * 299.99551 * 16 15 14 18 18 N 1.46502 * 109.46806 * 179.97438 * 16 15 14 19 19 C 1.36935 * 119.99747 * 85.00034 * 18 16 15 20 20 H 1.08003 * 120.00375 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00099 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00131 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00259 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46955 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47194 * 120.00525 * 23 21 19 26 26 H 1.48504 * 109.46908 * 240.00331 * 23 21 19 27 27 C 1.53001 * 109.47281 * 60.00166 * 16 15 14 28 28 C 1.53001 * 109.46712 * 299.99638 * 27 16 15 29 29 C 1.54889 * 110.48158 * 149.99817 * 3 2 1 30 30 H 1.09000 * 109.47164 * 299.99867 * 1 2 3 31 31 H 1.09005 * 109.46881 * 59.99715 * 1 2 3 32 32 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 33 33 H 1.08999 * 110.03152 * 337.00099 * 5 3 2 34 34 H 1.08994 * 110.02899 * 98.42827 * 5 3 2 35 35 H 1.09001 * 110.03473 * 240.71407 * 6 5 3 36 36 H 1.09005 * 110.03108 * 119.28164 * 6 5 3 37 37 H 0.97008 * 120.00221 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.47025 * 300.00404 * 14 12 11 39 39 H 1.09005 * 109.46770 * 59.99992 * 14 12 11 40 40 H 1.08995 * 109.47200 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.46856 * 59.99777 * 15 14 12 42 42 H 0.96998 * 120.00155 * 264.99847 * 18 16 15 43 43 H 0.97000 * 120.00266 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.47114 * 179.97438 * 27 16 15 45 45 H 1.08995 * 109.47406 * 59.99388 * 27 16 15 46 46 H 1.08991 * 109.47699 * 299.99994 * 28 27 16 47 47 H 1.09002 * 109.47200 * 179.97438 * 28 27 16 48 48 H 1.09000 * 110.75622 * 38.30967 * 29 3 2 49 49 H 1.09003 * 110.92015 * 275.00577 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 0.4696 5 6 2.3501 1.7452 -1.4391 6 6 3.6781 2.5185 -1.3603 7 6 4.0992 2.5212 0.1237 8 1 3.7641 3.4354 0.6137 9 6 5.5936 2.3717 0.2483 10 8 6.0628 1.3805 0.7662 11 7 6.4086 3.3395 -0.2158 12 6 7.8614 3.1940 -0.0953 13 1 8.0989 2.6778 0.8350 14 6 8.3926 2.3826 -1.2786 15 6 9.9097 2.2300 -1.1525 16 6 10.5628 3.6137 -1.1486 17 1 10.3258 4.1300 -2.0787 18 7 12.0155 3.4676 -1.0271 19 6 12.7780 3.2554 -2.1445 20 1 12.3086 3.1961 -3.1154 21 6 14.1545 3.1175 -2.0296 22 7 14.7267 3.1902 -0.8466 23 14 15.1948 2.8288 -3.5540 24 1 14.3176 2.7885 -4.7516 25 1 16.1784 3.9318 -3.6983 26 1 15.9155 1.5368 -3.4240 27 6 10.0317 4.4250 0.0349 28 6 8.5145 4.5776 -0.0914 29 6 3.3786 1.2895 0.7255 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.4647 0.8706 -2.0795 34 1 1.5637 2.3922 -1.8273 35 1 3.5361 3.5410 -1.7104 36 1 4.4372 2.0192 -1.9625 37 1 6.0333 4.1322 -0.6303 38 1 7.9277 1.3967 -1.2812 39 1 8.1551 2.8987 -2.2089 40 1 10.2882 1.6524 -1.9957 41 1 10.1468 1.7137 -0.2222 42 1 12.4371 3.5212 -0.1552 43 1 15.6885 3.0943 -0.7663 44 1 10.4973 5.4106 0.0379 45 1 10.2687 3.9087 0.9650 46 1 8.2774 5.0939 -1.0215 47 1 8.1360 5.1552 0.7519 48 1 3.9252 0.3740 0.4992 49 1 3.2499 1.4048 1.8018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034683225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:59 Heat of formation + Delta-G solvation = -100.149534 kcal Electronic energy + Delta-G solvation = -25963.698682 eV Core-core repulsion = 22310.613425 eV Total energy + Delta-G solvation = -3653.085257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45051 -38.99307 -37.90010 -36.03389 -34.83465 -33.00776 -30.75469 -30.38563 -29.33943 -28.97925 -27.21450 -26.34994 -23.72321 -22.51424 -22.17464 -20.97992 -20.79352 -20.04311 -19.35046 -17.77382 -17.01254 -16.67485 -16.39932 -16.03586 -15.31422 -15.09917 -14.94450 -14.53304 -14.15993 -13.87880 -13.71498 -13.66334 -13.46755 -13.00173 -12.77199 -12.58257 -12.21060 -12.05855 -11.91333 -11.81191 -11.77283 -11.51902 -11.39867 -11.13433 -11.01646 -10.83771 -10.81100 -10.73535 -10.63311 -10.13689 -10.08349 -9.93190 -9.78575 -9.72993 -9.54200 -8.94530 -8.82879 -6.91714 -5.73623 -3.01939 2.59188 3.03494 3.44902 3.47259 3.50487 3.52722 4.10980 4.14495 4.49461 4.61148 4.69424 4.86257 4.90154 4.93236 5.00503 5.04281 5.07281 5.08964 5.14751 5.21714 5.30631 5.34473 5.51337 5.54281 5.57237 5.63760 5.70706 5.75751 5.77022 5.83328 5.88410 5.90259 5.98526 6.05939 6.26154 6.30182 6.33162 6.51083 6.59585 6.68729 6.75362 6.87148 7.01650 7.17854 7.48691 7.73415 8.21200 8.45291 9.56241 10.15159 10.49637 11.49232 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.002210 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.115468 B =12665.361251 C =12960.713723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.081 3.919 4 H 0.068 0.932 5 C -0.145 4.145 6 C -0.111 4.111 7 C -0.115 4.115 8 H 0.101 0.899 9 C 0.519 3.481 10 O -0.535 6.535 11 N -0.725 5.725 12 C 0.144 3.856 13 H 0.087 0.913 14 C -0.123 4.123 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.046 0.954 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.101 4.101 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.124 1.832 1.738 30.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.023 3.977 4 H 0.086 0.914 5 C -0.183 4.183 6 C -0.149 4.149 7 C -0.136 4.136 8 H 0.119 0.881 9 C 0.304 3.696 10 O -0.411 6.411 11 N -0.375 5.375 12 C 0.040 3.960 13 H 0.105 0.895 14 C -0.162 4.162 15 C -0.173 4.173 16 C 0.067 3.933 17 H 0.064 0.936 18 N -0.366 5.366 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.160 4.160 28 C -0.157 4.157 29 C -0.139 4.139 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.230 0.770 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.575 0.931 1.937 29.653 hybrid contribution 0.377 0.456 -0.798 0.993 sum -29.198 1.387 1.139 29.253 Atomic orbital electron populations 1.22792 0.81247 1.02787 0.99829 1.87965 1.19478 1.27478 1.94890 1.23057 0.94842 0.84544 0.95219 0.91356 1.22626 0.97158 1.00750 0.97770 1.22035 0.97410 1.01117 0.94343 1.22095 0.92313 1.00895 0.98308 0.88071 1.20392 0.88480 0.82962 0.77719 1.90728 1.77307 1.29575 1.43485 1.46172 1.07274 1.22374 1.61693 1.21112 0.77742 0.96939 1.00157 0.89517 1.21887 0.97537 0.99578 0.97215 1.22221 0.92027 1.00923 1.02138 1.20239 0.85265 0.92312 0.95446 0.93639 1.42440 1.00033 1.86490 1.07631 1.19289 0.88933 1.40811 0.87642 0.91183 1.24743 0.96719 1.03100 0.96594 1.69671 1.09730 1.57375 1.21411 0.86139 0.80502 0.77375 0.82330 1.20599 1.21944 1.21918 1.21753 0.92895 1.01228 1.00075 1.21741 0.96752 0.95311 1.01850 1.22389 0.93484 0.98527 0.99477 0.94053 0.94129 0.89657 0.90312 0.91427 0.90747 0.90753 0.76963 0.92426 0.92386 0.91844 0.92505 0.78313 0.93618 0.91393 0.91983 0.91621 0.91950 0.88809 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.85 101.05 1.10 1.28 16 2 O -0.38 -3.60 10.41 -35.23 -0.37 -3.96 16 3 C 0.08 0.64 3.35 -25.07 -0.08 0.55 16 4 H 0.07 0.42 7.82 -51.93 -0.41 0.01 16 5 C -0.15 -1.01 6.56 -25.61 -0.17 -1.18 16 6 C -0.11 -0.77 6.35 -25.62 -0.16 -0.93 16 7 C -0.11 -0.94 3.25 -90.12 -0.29 -1.23 16 8 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 9 C 0.52 6.16 6.96 -10.99 -0.08 6.08 16 10 O -0.53 -8.81 15.38 5.56 0.09 -8.73 16 11 N -0.72 -7.56 5.06 -53.80 -0.27 -7.84 16 12 C 0.14 1.90 2.45 -67.93 -0.17 1.74 16 13 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 14 C -0.12 -1.84 5.49 -26.73 -0.15 -1.99 16 15 C -0.13 -2.44 5.50 -26.73 -0.15 -2.58 16 16 C 0.18 3.47 2.77 -67.93 -0.19 3.29 16 17 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 18 N -0.73 -18.24 5.12 -53.42 -0.27 -18.51 16 19 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 22 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 23 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C -0.12 -1.93 5.39 -26.73 -0.14 -2.07 16 28 C -0.12 -1.44 5.39 -26.73 -0.14 -1.59 16 29 C -0.10 -0.95 5.66 -24.75 -0.14 -1.09 16 30 H 0.04 0.20 8.11 -51.93 -0.42 -0.22 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.62 7.83 -51.93 -0.41 0.22 16 37 H 0.40 2.92 8.60 -40.82 -0.35 2.57 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.38 10.27 7.80 -40.82 -0.32 9.95 16 43 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.15 7.46 -51.93 -0.39 0.77 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 386.79 15.07 5.83 5.83 Total: -1.00 -33.37 386.79 -9.30 -42.67 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.99 Total: 7.71 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.01 Total: -7.01 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.18 Total: -54.09 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.28 Total: -12.69 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.37 -9.30 -42.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034683225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.484 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds