Wall clock time and date at job start Fri Apr 10 2020 22:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42896 * 113.99939 * 2 1 4 4 H 1.08999 * 110.54071 * 27.38993 * 3 2 1 5 5 C 1.54268 * 110.48780 * 264.77296 * 3 2 1 6 6 C 1.53873 * 106.59675 * 217.71233 * 5 3 2 7 7 C 1.54264 * 106.60152 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.49036 * 264.93341 * 7 6 5 9 9 C 1.50704 * 110.48701 * 142.28569 * 7 6 5 10 10 O 1.21280 * 120.00039 * 245.22236 * 9 7 6 11 11 N 1.34768 * 119.99956 * 65.22973 * 9 7 6 12 12 C 1.46501 * 120.00219 * 180.02562 * 11 9 7 13 13 H 1.09005 * 109.47111 * 324.99549 * 12 11 9 14 14 C 1.53002 * 109.47509 * 84.99348 * 12 11 9 15 15 C 1.52997 * 109.47532 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46864 * 300.00179 * 15 14 12 17 17 H 1.08995 * 109.47400 * 299.99551 * 16 15 14 18 18 N 1.46502 * 109.46806 * 179.97438 * 16 15 14 19 19 C 1.36935 * 119.99747 * 85.00034 * 18 16 15 20 20 H 1.08003 * 120.00375 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00099 * 179.97438 * 19 18 16 22 22 N 1.31618 * 120.00131 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00259 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46955 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47194 * 120.00525 * 23 21 19 26 26 H 1.48504 * 109.46908 * 240.00331 * 23 21 19 27 27 C 1.53001 * 109.47281 * 60.00166 * 16 15 14 28 28 C 1.53001 * 109.46712 * 299.99638 * 27 16 15 29 29 C 1.54889 * 110.48158 * 149.99817 * 3 2 1 30 30 H 1.09000 * 109.47164 * 299.99867 * 1 2 3 31 31 H 1.09005 * 109.46881 * 59.99715 * 1 2 3 32 32 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 33 33 H 1.08999 * 110.03152 * 337.00099 * 5 3 2 34 34 H 1.08994 * 110.02899 * 98.42827 * 5 3 2 35 35 H 1.09001 * 110.03473 * 240.71407 * 6 5 3 36 36 H 1.09005 * 110.03108 * 119.28164 * 6 5 3 37 37 H 0.97008 * 120.00221 * 359.97438 * 11 9 7 38 38 H 1.09000 * 109.47025 * 300.00404 * 14 12 11 39 39 H 1.09005 * 109.46770 * 59.99992 * 14 12 11 40 40 H 1.08995 * 109.47200 * 180.02562 * 15 14 12 41 41 H 1.09002 * 109.46856 * 59.99777 * 15 14 12 42 42 H 0.96998 * 120.00155 * 264.99847 * 18 16 15 43 43 H 0.97000 * 120.00266 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.47114 * 179.97438 * 27 16 15 45 45 H 1.08995 * 109.47406 * 59.99388 * 27 16 15 46 46 H 1.08991 * 109.47699 * 299.99994 * 28 27 16 47 47 H 1.09002 * 109.47200 * 179.97438 * 28 27 16 48 48 H 1.09000 * 110.75622 * 38.30967 * 29 3 2 49 49 H 1.09003 * 110.92015 * 275.00577 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3379 2.0234 0.4696 5 6 2.3501 1.7452 -1.4391 6 6 3.6781 2.5185 -1.3603 7 6 4.0992 2.5212 0.1237 8 1 3.7641 3.4354 0.6137 9 6 5.5936 2.3717 0.2483 10 8 6.0628 1.3805 0.7662 11 7 6.4086 3.3395 -0.2158 12 6 7.8614 3.1940 -0.0953 13 1 8.0989 2.6778 0.8350 14 6 8.3926 2.3826 -1.2786 15 6 9.9097 2.2300 -1.1525 16 6 10.5628 3.6137 -1.1486 17 1 10.3258 4.1300 -2.0787 18 7 12.0155 3.4676 -1.0271 19 6 12.7780 3.2554 -2.1445 20 1 12.3086 3.1961 -3.1154 21 6 14.1545 3.1175 -2.0296 22 7 14.7267 3.1902 -0.8466 23 14 15.1948 2.8288 -3.5540 24 1 14.3176 2.7885 -4.7516 25 1 16.1784 3.9318 -3.6983 26 1 15.9155 1.5368 -3.4240 27 6 10.0317 4.4250 0.0349 28 6 8.5145 4.5776 -0.0914 29 6 3.3786 1.2895 0.7255 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.4647 0.8706 -2.0795 34 1 1.5637 2.3922 -1.8273 35 1 3.5361 3.5410 -1.7104 36 1 4.4372 2.0192 -1.9625 37 1 6.0333 4.1322 -0.6303 38 1 7.9277 1.3967 -1.2812 39 1 8.1551 2.8987 -2.2089 40 1 10.2882 1.6524 -1.9957 41 1 10.1468 1.7137 -0.2222 42 1 12.4371 3.5212 -0.1552 43 1 15.6885 3.0943 -0.7663 44 1 10.4973 5.4106 0.0379 45 1 10.2687 3.9087 0.9650 46 1 8.2774 5.0939 -1.0215 47 1 8.1360 5.1552 0.7519 48 1 3.9252 0.3740 0.4992 49 1 3.2499 1.4048 1.8018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034683225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:30:59 Heat of formation + Delta-G solvation = -123.185469 kcal Electronic energy + Delta-G solvation = -25964.697595 eV Core-core repulsion = 22310.613425 eV Total energy + Delta-G solvation = -3654.084170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36352 -39.86977 -39.02615 -36.75815 -36.32203 -34.61880 -32.48343 -31.69050 -30.17205 -29.67693 -28.52570 -26.94543 -25.57864 -23.72970 -23.30724 -22.07673 -21.51482 -21.14041 -20.53000 -19.13699 -18.44419 -17.37825 -17.31613 -16.98131 -16.71801 -16.01696 -15.80022 -15.66633 -15.41963 -15.21336 -15.05339 -14.78404 -14.58344 -14.27141 -14.00483 -13.48255 -13.33275 -13.17817 -13.08785 -12.88991 -12.83465 -12.53715 -12.43497 -12.28213 -12.26712 -12.14219 -12.09617 -12.02997 -11.78271 -11.65968 -11.47623 -11.34381 -11.19480 -10.87444 -10.69502 -10.48076 -9.99835 -8.99620 -7.93824 -5.21907 1.46197 1.47249 1.57007 1.67207 2.16604 2.56273 2.90298 3.39078 3.44082 3.53773 3.76542 3.82567 3.91033 3.97109 4.12378 4.29887 4.33474 4.37499 4.39938 4.41173 4.42957 4.49888 4.55203 4.55566 4.60053 4.61143 4.66397 4.70340 4.87095 4.88257 4.94067 5.00907 5.08715 5.12662 5.15833 5.18064 5.24243 5.25658 5.27979 5.31438 5.48848 5.55284 5.58022 5.64148 6.29151 6.35616 6.64672 7.34370 7.34462 8.12259 8.34446 9.30091 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.032025 B = 0.002210 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.115468 B =12665.361251 C =12960.713723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.082 3.918 4 H 0.094 0.906 5 C -0.142 4.142 6 C -0.106 4.106 7 C -0.103 4.103 8 H 0.139 0.861 9 C 0.514 3.486 10 O -0.589 6.589 11 N -0.707 5.707 12 C 0.151 3.849 13 H 0.059 0.941 14 C -0.111 4.111 15 C -0.123 4.123 16 C 0.173 3.827 17 H 0.049 0.951 18 N -0.740 5.740 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.081 4.081 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.292 1.292 26 H -0.297 1.297 27 C -0.114 4.114 28 C -0.103 4.103 29 C -0.107 4.107 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.418 0.582 38 H 0.043 0.957 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.068 0.932 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.053 0.947 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.096 4.195 0.515 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C 0.025 3.975 4 H 0.112 0.888 5 C -0.180 4.180 6 C -0.144 4.144 7 C -0.124 4.124 8 H 0.156 0.844 9 C 0.302 3.698 10 O -0.469 6.469 11 N -0.359 5.359 12 C 0.046 3.954 13 H 0.078 0.922 14 C -0.150 4.150 15 C -0.164 4.164 16 C 0.064 3.936 17 H 0.067 0.933 18 N -0.379 5.379 19 C -0.366 4.366 20 H 0.094 0.906 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.800 3.200 24 H -0.190 1.190 25 H -0.219 1.219 26 H -0.224 1.224 27 C -0.153 4.153 28 C -0.142 4.142 29 C -0.145 4.145 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.256 0.744 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -32.624 3.333 0.673 32.801 hybrid contribution 1.231 -0.344 -0.389 1.336 sum -31.393 2.989 0.284 31.537 Atomic orbital electron populations 1.22964 0.79600 1.03564 1.01032 1.87928 1.21445 1.28734 1.95095 1.23138 0.94122 0.84574 0.95694 0.88785 1.22616 0.97966 1.00516 0.96904 1.22060 0.96685 1.02852 0.92839 1.22119 0.89008 1.01656 0.99663 0.84359 1.21118 0.90159 0.82057 0.76451 1.90717 1.78472 1.31814 1.45911 1.45926 1.05795 1.22935 1.61228 1.20813 0.79603 0.97077 0.97881 0.92226 1.21748 0.94498 0.99633 0.99134 1.22033 0.94711 0.99667 1.00008 1.20496 0.82517 0.93222 0.97317 0.93269 1.42691 1.02306 1.86489 1.06382 1.19669 0.89429 1.38943 0.88601 0.90646 1.25563 0.98128 1.04142 0.99414 1.69827 1.09572 1.59370 1.23489 0.85101 0.78752 0.76634 0.79481 1.18954 1.21936 1.22443 1.21647 0.95790 1.00160 0.97693 1.21638 0.93358 0.94840 1.04338 1.22379 0.94631 0.97540 0.99967 0.92833 0.92823 0.89291 0.92180 0.88857 0.87331 0.92686 0.74444 0.93864 0.90406 0.94231 0.94557 0.79758 0.94160 0.91340 0.93113 0.89194 0.89224 0.92785 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.41 -7.55 10.41 -148.98 -1.55 -9.10 16 3 C 0.08 1.13 3.35 31.67 0.11 1.24 16 4 H 0.09 0.81 7.82 -2.39 -0.02 0.79 16 5 C -0.14 -1.62 6.56 31.32 0.21 -1.41 16 6 C -0.11 -1.14 6.35 31.32 0.20 -0.94 16 7 C -0.10 -1.43 3.25 -10.47 -0.03 -1.47 16 8 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 9 C 0.51 11.58 6.96 87.66 0.61 12.19 16 10 O -0.59 -19.99 15.38 -3.03 -0.05 -20.04 16 11 N -0.71 -12.88 5.06 -442.53 -2.24 -15.12 16 12 C 0.15 3.76 2.45 44.99 0.11 3.87 16 13 H 0.06 1.86 7.58 -2.38 -0.02 1.84 16 14 C -0.11 -3.25 5.49 30.59 0.17 -3.08 16 15 C -0.12 -4.65 5.50 30.59 0.17 -4.48 16 16 C 0.17 6.74 2.77 44.99 0.12 6.86 16 17 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 18 N -0.74 -37.90 5.12 -322.93 -1.65 -39.55 16 19 C -0.23 -13.20 9.93 84.03 0.83 -12.36 16 20 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 22 N -0.97 -60.70 13.06 21.65 0.28 -60.41 16 23 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 26 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 27 C -0.11 -3.53 5.39 30.60 0.16 -3.36 16 28 C -0.10 -2.21 5.39 30.60 0.17 -2.04 16 29 C -0.11 -1.97 5.66 31.88 0.18 -1.79 16 30 H 0.05 0.42 8.11 -2.39 -0.02 0.40 16 31 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.91 8.07 -2.39 -0.02 0.90 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.05 0.82 7.83 -2.38 -0.02 0.80 16 37 H 0.42 4.22 8.60 -92.70 -0.80 3.43 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.37 20.54 7.80 -92.71 -0.72 19.82 16 43 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 44 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.05 1.42 7.46 -2.39 -0.02 1.40 16 49 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -76.69 386.79 0.92 -75.77 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.60 Total: 28.98 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.70 Total: -9.55 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -3.61 Total: -115.08 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -1.60 Total: -29.13 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -76.69 0.92 -75.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034683225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.420 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds