Wall clock time and date at job start Fri Apr 10 2020 22:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99874 * 2 1 4 4 H 1.09002 * 109.47259 * 30.00319 * 3 2 1 5 5 C 1.52997 * 109.47319 * 270.00076 * 3 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47106 * 60.00162 * 6 5 3 8 8 C 1.53002 * 109.47128 * 300.00123 * 7 6 5 9 9 H 1.09002 * 109.47097 * 299.99925 * 8 7 6 10 10 C 1.52999 * 109.47628 * 180.02562 * 8 7 6 11 11 C 1.50696 * 109.47243 * 64.99777 * 10 8 7 12 12 O 1.21284 * 120.00000 * 0.02562 * 11 10 8 13 13 N 1.34772 * 120.00364 * 180.02562 * 11 10 8 14 14 C 1.46505 * 119.99738 * 0.02562 * 13 11 10 15 15 C 1.46497 * 120.00455 * 179.97438 * 13 11 10 16 16 C 1.53942 * 113.74591 * 218.74182 * 15 13 11 17 17 N 1.47813 * 86.03793 * 222.08707 * 16 15 13 18 18 C 1.36937 * 134.46021 * 204.64329 * 17 16 15 19 19 H 1.08000 * 120.00308 * 179.86367 * 18 17 16 20 20 C 1.38819 * 119.99454 * 359.86861 * 18 17 16 21 21 N 1.31611 * 120.00086 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99579 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47129 * 120.00167 * 22 20 18 25 25 H 1.48504 * 109.46909 * 239.99644 * 22 20 18 26 26 C 1.47579 * 91.05262 * 24.54772 * 17 16 15 27 27 C 1.52997 * 109.46978 * 59.99726 * 8 7 6 28 28 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47082 * 300.00110 * 1 2 3 30 30 H 1.08997 * 109.47374 * 59.99540 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00307 * 5 3 2 32 32 H 1.08998 * 109.47533 * 59.99936 * 5 3 2 33 33 H 1.09002 * 109.47103 * 300.00247 * 6 5 3 34 34 H 1.08996 * 109.47747 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.47407 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47596 * 60.00070 * 7 6 5 37 37 H 1.08995 * 109.47075 * 185.00067 * 10 8 7 38 38 H 1.09007 * 109.46669 * 304.99824 * 10 8 7 39 39 H 1.08994 * 109.47543 * 89.99585 * 14 13 11 40 40 H 1.08999 * 109.47109 * 210.00451 * 14 13 11 41 41 H 1.09009 * 109.46777 * 329.99610 * 14 13 11 42 42 H 1.08998 * 112.94190 * 350.34003 * 15 13 11 43 43 H 1.09000 * 113.76768 * 336.34933 * 16 15 13 44 44 H 1.08994 * 113.76943 * 107.74676 * 16 15 13 45 45 H 0.97008 * 119.99979 * 180.02562 * 21 20 18 46 46 H 1.08997 * 113.77554 * 221.15587 * 26 17 16 47 47 H 1.08999 * 113.87244 * 89.76794 * 26 17 16 48 48 H 1.09000 * 109.47140 * 180.02562 * 27 8 7 49 49 H 1.09002 * 109.47497 * 60.00450 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 2.8405 3.1688 -1.4425 7 6 4.1893 3.1260 -0.7215 8 6 3.9819 2.6601 0.7210 9 1 3.3170 3.3542 1.2350 10 6 5.3306 2.6179 1.4423 11 6 5.8863 4.0144 1.5505 12 8 5.2647 4.9514 1.0959 13 7 7.0741 4.2223 2.1524 14 6 7.8253 3.0905 2.7010 15 6 7.6147 5.5799 2.2570 16 6 9.1380 5.6583 2.0491 17 7 9.1408 6.6063 3.1831 18 6 9.9725 7.6166 3.5867 19 1 9.7444 8.1798 4.4796 20 6 11.1089 7.9167 2.8481 21 7 11.3871 7.2301 1.7603 22 14 12.2439 9.2944 3.3990 23 1 11.7120 9.9062 4.6431 24 1 13.5994 8.7456 3.6569 25 1 12.3222 10.3267 2.3344 26 6 7.8866 6.0289 3.7043 27 6 3.3590 1.2627 0.7210 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.8829 1.0775 -1.9563 32 1 1.2569 1.8015 -1.9563 33 1 2.1756 3.8630 -0.9285 34 1 2.9887 3.5006 -2.4701 35 1 4.6328 4.1217 -0.7211 36 1 4.8542 2.4319 -1.2354 37 1 5.1957 2.2021 2.4408 38 1 6.0242 1.9933 0.8793 39 1 8.4895 2.6898 1.9354 40 1 8.4148 3.4252 3.5546 41 1 7.1302 2.3143 3.0216 42 1 7.0536 6.3071 1.6701 43 1 9.6584 4.7234 2.2568 44 1 9.4292 6.1068 1.0993 45 1 12.1814 7.4397 1.2443 46 1 7.1805 6.7726 4.0735 47 1 8.0367 5.2030 4.3996 48 1 3.2109 0.9309 1.7487 49 1 4.0239 0.5684 0.2071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042876436.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:05 Heat of formation + Delta-G solvation = -61.381986 kcal Electronic energy + Delta-G solvation = -26373.457658 eV Core-core repulsion = 22722.053487 eV Total energy + Delta-G solvation = -3651.404170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39251 -40.21509 -39.19204 -37.37978 -35.85884 -34.09329 -33.26408 -31.04259 -29.81898 -28.14207 -27.75335 -27.27260 -26.62942 -24.94888 -23.33438 -22.70692 -21.14627 -20.71424 -19.78188 -18.85377 -18.08732 -17.39834 -17.20206 -16.91992 -16.60960 -16.48788 -16.00120 -15.78048 -15.53890 -15.12423 -14.75553 -14.57234 -14.21050 -13.92351 -13.85736 -13.60120 -13.38875 -13.21694 -13.18373 -13.02398 -12.97534 -12.78349 -12.66191 -12.55152 -12.43436 -12.04858 -11.93859 -11.90871 -11.88807 -11.56235 -11.45458 -11.33185 -11.25176 -10.90594 -10.54438 -10.34782 -9.48087 -8.97835 -7.94735 -5.29067 1.44513 1.46117 1.56455 1.72615 2.04598 2.47450 2.82477 3.24995 3.39974 3.65562 3.72026 3.77918 3.86409 4.11564 4.12642 4.23522 4.27002 4.34640 4.38199 4.43393 4.52449 4.53786 4.56106 4.60490 4.66866 4.69376 4.72939 4.74908 4.81661 4.85366 4.87484 4.90469 5.01481 5.08164 5.09833 5.18422 5.24770 5.25581 5.28687 5.37356 5.45188 5.51314 5.57436 5.73318 5.87743 6.32246 6.57272 6.87225 7.29703 7.55354 8.49189 9.22540 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.039559 B = 0.002352 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.642024 B =11903.011782 C =12145.864704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.088 3.912 4 H 0.061 0.939 5 C -0.133 4.133 6 C -0.112 4.112 7 C -0.123 4.123 8 C -0.062 4.062 9 H 0.063 0.937 10 C -0.125 4.125 11 C 0.505 3.495 12 O -0.583 6.583 13 N -0.604 5.604 14 C 0.072 3.928 15 C 0.116 3.884 16 C 0.161 3.839 17 N -0.639 5.639 18 C -0.235 4.235 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.953 5.953 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.289 1.289 25 H -0.293 1.293 26 C 0.115 3.885 27 C -0.103 4.103 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.250 0.750 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.536 -17.909 -2.332 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.031 3.969 4 H 0.079 0.921 5 C -0.171 4.171 6 C -0.149 4.149 7 C -0.160 4.160 8 C -0.081 4.081 9 H 0.082 0.918 10 C -0.165 4.165 11 C 0.296 3.704 12 O -0.463 6.463 13 N -0.336 5.336 14 C -0.069 4.069 15 C 0.010 3.990 16 C 0.035 3.965 17 N -0.366 5.366 18 C -0.363 4.363 19 H 0.104 0.896 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.810 3.190 23 H -0.188 1.188 24 H -0.216 1.216 25 H -0.220 1.220 26 C -0.011 4.011 27 C -0.140 4.140 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.485 -17.393 -2.554 26.243 hybrid contribution 0.882 1.331 0.020 1.597 sum -18.603 -16.062 -2.534 24.708 Atomic orbital electron populations 1.22940 0.80057 1.03639 1.00523 1.87866 1.20937 1.28421 1.95203 1.22157 0.95129 0.84015 0.95634 0.92091 1.21978 1.01298 0.96766 0.97085 1.21414 0.96454 0.96462 1.00597 1.21708 0.97539 1.01605 0.95191 1.20767 0.95095 0.96380 0.95824 0.91829 1.21801 0.97986 0.92022 1.04643 1.21481 0.80027 0.92713 0.76215 1.90636 1.59915 1.46451 1.49313 1.48067 1.20480 1.07661 1.57387 1.22027 0.97535 0.88034 0.99351 1.23192 0.94398 0.84125 0.97236 1.22511 0.90608 0.91448 0.91914 1.46060 1.26106 1.35745 1.28669 1.19432 1.01936 1.07335 1.07607 0.89624 1.25685 1.00060 1.02405 0.97890 1.70012 1.28036 1.43765 1.18373 0.84953 0.78221 0.78156 0.77634 1.18837 1.21610 1.21970 1.23064 0.87122 0.95896 0.95015 1.21558 0.94991 0.96078 1.01408 0.88526 0.93443 0.93616 0.91339 0.91535 0.92496 0.91602 0.92690 0.91755 0.85980 0.86755 0.91815 0.91575 0.87245 0.89241 0.94424 0.94571 0.94126 0.93356 0.92184 0.90222 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.40 -7.12 10.35 -148.98 -1.54 -8.66 16 3 C 0.09 1.44 2.61 30.59 0.08 1.52 16 4 H 0.06 0.97 7.79 -2.39 -0.02 0.96 16 5 C -0.13 -2.17 5.54 30.59 0.17 -2.01 16 6 C -0.11 -2.11 5.92 30.59 0.18 -1.93 16 7 C -0.12 -2.68 4.95 30.60 0.15 -2.53 16 8 C -0.06 -1.17 1.84 -10.79 -0.02 -1.19 16 9 H 0.06 1.42 7.95 -2.39 -0.02 1.40 16 10 C -0.13 -2.26 3.73 29.85 0.11 -2.15 16 11 C 0.51 14.65 7.39 87.66 0.65 15.30 16 12 O -0.58 -21.77 13.44 -3.04 -0.04 -21.81 16 13 N -0.60 -18.32 3.09 -828.31 -2.56 -20.88 16 14 C 0.07 1.59 8.83 127.77 1.13 2.71 16 15 C 0.12 4.66 4.40 46.75 0.21 4.87 16 16 C 0.16 7.77 6.97 86.44 0.60 8.37 16 17 N -0.64 -33.46 3.70 -716.69 -2.65 -36.11 16 18 C -0.23 -13.39 10.70 84.04 0.90 -12.49 16 19 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 20 C -0.07 -3.89 5.50 84.87 0.47 -3.42 16 21 N -0.95 -58.09 11.39 21.65 0.25 -57.84 16 22 Si 0.98 46.12 29.55 68.60 2.03 48.14 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C 0.11 4.75 8.46 86.49 0.73 5.48 16 27 C -0.10 -1.58 4.85 30.59 0.15 -1.43 16 28 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.05 0.48 7.87 -2.39 -0.02 0.46 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.98 7.87 -2.39 -0.02 0.96 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.59 5.95 -2.39 -0.01 1.58 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.52 7.40 -2.39 -0.02 1.51 16 38 H 0.11 1.65 8.11 -2.38 -0.02 1.63 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.63 6.35 -2.39 -0.02 1.61 16 41 H 0.11 1.46 6.44 -2.38 -0.02 1.44 16 42 H 0.09 4.07 7.22 -2.39 -0.02 4.05 16 43 H 0.04 1.75 6.83 -2.39 -0.02 1.74 16 44 H 0.04 2.01 7.17 -2.39 -0.02 1.99 16 45 H 0.25 14.71 8.31 -92.70 -0.77 13.94 16 46 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.06 2.22 6.85 -2.39 -0.02 2.20 16 48 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -72.81 376.65 3.11 -69.69 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.91 Total: 14.83 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.73 Total: 12.64 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.97 Total: -114.84 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.58 Total: -30.47 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.81 3.11 -69.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042876436.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.312 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds