Wall clock time and date at job start Fri Apr 10 2020 22:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99914 * 2 1 4 4 C 1.53004 * 109.47093 * 210.00185 * 3 2 1 5 5 C 1.53004 * 109.46652 * 300.00013 * 4 3 2 6 6 C 1.53002 * 109.47115 * 299.99459 * 5 4 3 7 7 C 1.52996 * 109.47208 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47178 * 175.00330 * 7 6 5 9 9 O 1.21287 * 119.99981 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00247 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99531 * 0.02562 * 10 8 7 12 12 C 1.46498 * 120.00149 * 180.02562 * 10 8 7 13 13 C 1.53497 * 114.20910 * 119.99816 * 12 10 8 14 14 N 1.47071 * 87.98313 * 87.71546 * 13 12 10 15 15 C 1.36934 * 136.05645 * 206.86110 * 14 13 12 16 16 H 1.08005 * 120.00310 * 6.66543 * 15 14 13 17 17 C 1.38816 * 120.00224 * 186.66622 * 15 14 13 18 18 N 1.31617 * 119.99750 * 6.43184 * 17 15 14 19 19 Si 1.86800 * 120.00074 * 186.43601 * 17 15 14 20 20 H 1.48508 * 109.46943 * 94.72635 * 19 17 15 21 21 H 1.48498 * 109.46995 * 214.72656 * 19 17 15 22 22 H 1.48493 * 109.47191 * 334.72918 * 19 17 15 23 23 C 1.47063 * 87.88456 * 27.12177 * 14 13 12 24 24 C 1.53012 * 109.46795 * 60.00502 * 6 5 4 25 25 C 1.53001 * 109.47576 * 89.99780 * 3 2 1 26 26 H 1.09001 * 109.47552 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47068 * 300.00571 * 1 2 3 28 28 H 1.09003 * 109.47174 * 60.00210 * 1 2 3 29 29 H 1.09000 * 109.47271 * 329.99641 * 3 2 1 30 30 H 1.08996 * 109.47055 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47304 * 59.99557 * 4 3 2 32 32 H 1.08999 * 109.46989 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.47459 * 59.99823 * 5 4 3 34 34 H 1.08994 * 109.47254 * 300.00489 * 6 5 4 35 35 H 1.09003 * 109.46995 * 55.00634 * 7 6 5 36 36 H 1.08996 * 109.47744 * 295.00797 * 7 6 5 37 37 H 1.09000 * 109.47122 * 269.99533 * 11 10 8 38 38 H 1.08991 * 109.47601 * 29.99893 * 11 10 8 39 39 H 1.09007 * 109.46827 * 150.00372 * 11 10 8 40 40 H 1.08997 * 113.28045 * 346.92971 * 12 10 8 41 41 H 1.09000 * 113.46600 * 332.94020 * 13 12 10 42 42 H 1.08995 * 113.51971 * 202.50443 * 13 12 10 43 43 H 0.96999 * 119.99876 * 179.97438 * 18 17 15 44 44 H 1.09002 * 113.47008 * 87.65981 * 23 14 13 45 45 H 1.09001 * 113.46665 * 218.09522 * 23 14 13 46 46 H 1.08996 * 109.46951 * 59.99513 * 24 6 5 47 47 H 1.08998 * 109.46730 * 179.97438 * 24 6 5 48 48 H 1.08994 * 109.47284 * 179.97438 * 25 3 2 49 49 H 1.08999 * 109.47074 * 300.00003 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3589 1.2633 -0.7213 5 6 4.2927 0.2892 0.0000 6 6 4.5002 0.7552 1.4425 7 6 5.4334 -0.2192 2.1640 8 6 5.7358 0.3039 3.5445 9 8 5.2521 1.3526 3.9150 10 7 6.5438 -0.3935 4.3674 11 6 7.1285 -1.6599 3.9196 12 6 6.8374 0.1147 5.7097 13 6 6.4066 -0.8230 6.8460 14 7 7.7158 -1.4827 6.7280 15 6 8.2183 -2.7299 6.9867 16 1 7.5539 -3.5303 7.2772 17 6 9.5818 -2.9657 6.8756 18 7 10.4060 -1.9655 6.6463 19 14 10.2468 -4.7024 7.0516 20 1 10.3845 -5.3183 5.7073 21 1 11.5748 -4.6591 7.7147 22 1 9.3096 -5.5104 7.8725 23 6 8.2492 -0.2113 6.2161 24 6 3.1514 0.7974 2.1638 25 6 2.2176 1.7715 1.4425 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.3450 1.9993 -0.5139 30 1 3.8024 2.2589 -0.7209 31 1 3.2111 0.9313 -1.7489 32 1 5.2533 0.2587 -0.5141 33 1 3.8494 -0.7065 0.0001 34 1 4.9435 1.7509 1.4424 35 1 6.3617 -0.3173 1.6012 36 1 4.9513 -1.1936 2.2422 37 1 6.4595 -2.4806 4.1785 38 1 7.2695 -1.6331 2.8392 39 1 8.0915 -1.8084 4.4082 40 1 6.5407 1.1540 5.8512 41 1 5.5696 -1.4693 6.5817 42 1 6.2614 -0.3139 7.7987 43 1 11.3588 -2.1301 6.5691 44 1 8.5952 0.4616 7.0007 45 1 8.9789 -0.3374 5.4162 46 1 2.7081 -0.1983 2.1637 47 1 3.2993 1.1289 3.1915 48 1 2.6614 2.7670 1.4424 49 1 1.2568 1.8016 1.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044374793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:31:19 Heat of formation + Delta-G solvation = -32.440561 kcal Electronic energy + Delta-G solvation = -26967.935761 eV Core-core repulsion = 23317.786585 eV Total energy + Delta-G solvation = -3650.149176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.13949 -39.27639 -37.82202 -36.15802 -33.99691 -32.25791 -31.73534 -30.79438 -28.13599 -27.17931 -26.40541 -25.99501 -24.58560 -23.21059 -22.72353 -21.67739 -19.90945 -19.50899 -18.09103 -16.95851 -16.48638 -16.43916 -16.02894 -15.52081 -15.42164 -15.13826 -14.78397 -14.31055 -13.97697 -13.86865 -13.61493 -13.20127 -13.09429 -12.71890 -12.60593 -12.45644 -12.34536 -12.05016 -11.87353 -11.73658 -11.37644 -11.32854 -11.30075 -11.11198 -10.98678 -10.89283 -10.63884 -10.55067 -10.35615 -10.11506 -10.08662 -9.86197 -9.61977 -9.42742 -9.19023 -8.81273 -7.90591 -6.92831 -5.83758 -3.14859 3.06168 3.34739 3.41016 3.42874 3.51494 3.62716 4.41638 4.60118 4.62241 4.75533 4.92816 5.01475 5.07617 5.12173 5.18829 5.23869 5.31660 5.41443 5.42908 5.45374 5.50273 5.51841 5.55588 5.61984 5.72386 5.77089 5.84989 5.94092 5.99494 6.08326 6.16576 6.19099 6.22623 6.25434 6.27981 6.50063 6.54553 6.58648 6.61524 6.71601 6.95467 7.05281 7.13449 7.31747 7.48242 7.89889 8.05155 8.67145 8.98286 9.64194 10.59658 11.34386 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.002832 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.785575 B = 9885.132462 C =10151.015315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.088 3.912 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.068 4.068 7 C -0.134 4.134 8 C 0.510 3.490 9 O -0.554 6.554 10 N -0.578 5.578 11 C 0.082 3.918 12 C 0.083 3.917 13 C 0.104 3.896 14 N -0.606 5.606 15 C -0.216 4.216 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.152 3.848 24 C -0.113 4.113 25 C -0.137 4.137 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.040 0.960 43 H 0.254 0.746 44 H 0.040 0.960 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.406 5.888 -15.202 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.030 3.970 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.087 4.087 7 C -0.173 4.173 8 C 0.299 3.701 9 O -0.433 6.433 10 N -0.308 5.308 11 C -0.061 4.061 12 C -0.022 4.022 13 C -0.024 4.024 14 N -0.332 5.332 15 C -0.344 4.344 16 H 0.098 0.902 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.026 3.974 24 C -0.150 4.150 25 C -0.175 4.175 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.267 5.980 -14.960 22.196 hybrid contribution 0.333 -0.836 0.392 0.982 sum -14.934 5.144 -14.569 21.488 Atomic orbital electron populations 1.22750 0.81744 1.02490 0.99612 1.87936 1.18941 1.27836 1.95019 1.22166 0.94613 0.84357 0.95851 1.21604 0.94112 1.00457 0.98887 1.21513 0.98743 0.99738 0.94882 1.20885 0.95355 0.98849 0.93575 1.21735 1.01188 1.00817 0.93608 1.20631 0.78217 0.84295 0.86939 1.90597 1.52111 1.23614 1.76987 1.47407 1.46629 1.22792 1.13999 1.21862 1.01862 0.84194 0.98156 1.22634 1.00480 0.97194 0.81934 1.22847 0.91035 0.93290 0.95193 1.45838 1.05561 1.06684 1.75131 1.18930 0.90850 0.83966 1.40636 0.90178 1.24808 0.95581 0.97515 1.02438 1.69850 1.02517 1.29140 1.55027 0.86137 0.78378 0.83775 0.77704 1.21499 1.21757 1.20632 1.22341 0.92079 0.86813 0.96180 1.21579 0.93718 0.99322 1.00391 1.21983 1.00061 0.99906 0.95552 0.89883 0.94223 0.94445 0.92738 0.90787 0.91615 0.92131 0.91074 0.90730 0.89195 0.89163 0.93131 0.92942 0.87665 0.88382 0.94119 0.94200 0.93582 0.94212 0.91674 0.92103 0.89925 0.91148 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.82 101.05 1.09 1.33 16 2 O -0.38 -3.99 9.00 -35.23 -0.32 -4.31 16 3 C 0.09 0.83 2.92 -26.73 -0.08 0.75 16 4 C -0.11 -1.01 5.66 -26.73 -0.15 -1.16 16 5 C -0.11 -1.12 5.06 -26.73 -0.14 -1.25 16 6 C -0.07 -0.81 1.84 -90.61 -0.17 -0.98 16 7 C -0.13 -1.72 3.73 -27.89 -0.10 -1.82 16 8 C 0.51 8.58 7.39 -10.99 -0.08 8.50 16 9 O -0.55 -10.57 13.47 5.55 0.07 -10.49 16 10 N -0.58 -10.48 3.12 -173.72 -0.54 -11.02 16 11 C 0.08 1.44 9.34 59.84 0.56 2.00 16 12 C 0.08 1.64 4.67 -67.81 -0.32 1.32 16 13 C 0.10 2.17 8.32 -8.50 -0.07 2.10 16 14 N -0.61 -14.88 2.48 -184.79 -0.46 -15.34 16 15 C -0.22 -5.78 10.36 -15.06 -0.16 -5.94 16 16 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -26.26 11.82 55.49 0.66 -25.61 16 19 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.15 3.50 6.24 -8.51 -0.05 3.45 16 24 C -0.11 -1.42 4.80 -26.72 -0.13 -1.55 16 25 C -0.14 -1.44 5.63 -26.73 -0.15 -1.59 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.04 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.05 0.44 7.79 -51.93 -0.40 0.04 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 34 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 35 H 0.09 1.04 7.40 -51.93 -0.38 0.65 16 36 H 0.09 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.75 6.44 -51.93 -0.33 0.41 16 39 H 0.10 2.26 5.40 -51.92 -0.28 1.98 16 40 H 0.10 1.91 7.29 -51.93 -0.38 1.53 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.06 1.62 6.71 -51.93 -0.35 1.27 16 46 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 47 H 0.08 1.26 5.95 -51.93 -0.31 0.95 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -30.34 374.69 -8.66 -39.00 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.66 Total: 0.86 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.04 Total: 4.89 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.34 Total: -51.97 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.24 Total: -14.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.34 -8.66 -39.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044374793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.562 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds