Wall clock time and date at job start Fri Apr 10 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50695 * 120.00410 * 2 1 4 4 C 1.50706 * 119.99865 * 179.97438 * 2 1 3 5 5 H 1.09005 * 109.46897 * 355.00198 * 4 2 1 6 6 C 1.52995 * 109.46955 * 115.00022 * 4 2 1 7 7 C 1.50702 * 109.46741 * 180.70793 * 6 4 2 8 8 O 1.21284 * 120.00293 * 5.23455 * 7 6 4 9 9 N 1.34780 * 119.99889 * 185.22990 * 7 6 4 10 10 C 1.46504 * 120.00014 * 4.49382 * 9 7 6 11 11 C 1.46505 * 120.00230 * 184.48727 * 9 7 6 12 12 C 1.52992 * 109.46912 * 81.35663 * 11 9 7 13 13 H 1.08996 * 112.74175 * 289.31441 * 12 11 9 14 14 C 1.53495 * 113.52264 * 158.52272 * 12 11 9 15 15 C 1.53751 * 83.26014 * 218.97752 * 14 12 11 16 16 N 1.47063 * 87.89135 * 26.23309 * 15 14 12 17 17 C 1.36938 * 136.05981 * 152.96432 * 16 15 14 18 18 H 1.07996 * 120.00167 * 140.52995 * 17 16 15 19 19 C 1.38813 * 119.99497 * 320.80412 * 17 16 15 20 20 N 1.31626 * 119.99674 * 180.76633 * 19 17 16 21 21 Si 1.86798 * 120.00493 * 0.76651 * 19 17 16 22 22 H 1.48498 * 109.46925 * 84.60220 * 21 19 17 23 23 H 1.48493 * 109.47174 * 204.60366 * 21 19 17 24 24 H 1.48500 * 109.47059 * 324.60374 * 21 19 17 25 25 O 1.42897 * 109.47475 * 235.00542 * 4 2 1 26 26 C 1.42906 * 114.00101 * 92.48246 * 25 4 2 27 27 C 1.53003 * 109.46642 * 184.88959 * 26 25 4 28 28 H 1.08007 * 119.99509 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.00849 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46851 * 239.99835 * 3 2 1 31 31 H 1.09000 * 109.47231 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47561 * 119.99786 * 3 2 1 33 33 H 1.08994 * 109.47046 * 60.71378 * 6 4 2 34 34 H 1.08996 * 109.47517 * 300.70658 * 6 4 2 35 35 H 1.09005 * 109.46395 * 270.00187 * 10 9 7 36 36 H 1.09003 * 109.46716 * 29.99241 * 10 9 7 37 37 H 1.08995 * 109.47513 * 149.99516 * 10 9 7 38 38 H 1.08997 * 109.46660 * 321.35864 * 11 9 7 39 39 H 1.09001 * 109.47169 * 201.35864 * 11 9 7 40 40 H 1.09010 * 114.20145 * 332.72945 * 14 12 11 41 41 H 1.08991 * 114.21161 * 105.35395 * 14 12 11 42 42 H 1.09002 * 113.46350 * 271.49964 * 15 14 12 43 43 H 1.08994 * 113.55930 * 140.98786 * 15 14 12 44 44 H 0.96998 * 119.99744 * 185.00950 * 20 19 17 45 45 H 1.08999 * 109.47173 * 304.89436 * 26 25 4 46 46 H 1.08995 * 109.46801 * 64.89248 * 26 25 4 47 47 H 1.08996 * 109.47253 * 64.96358 * 27 26 25 48 48 H 1.09010 * 109.46625 * 184.95424 * 27 26 25 49 49 H 1.08995 * 109.47271 * 304.95036 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 1 1.3584 -2.1317 0.0905 6 6 2.8464 -1.4426 -1.3067 7 6 3.5860 -2.7556 -1.3135 8 8 3.4218 -3.5489 -0.4108 9 7 4.4299 -3.0484 -2.3227 10 6 4.7038 -2.0518 -3.3611 11 6 5.0735 -4.3632 -2.3814 12 6 4.1035 -5.3792 -2.9876 13 1 3.2759 -5.6213 -2.3209 14 6 4.7987 -6.6162 -3.5729 15 6 3.7313 -6.4729 -4.6703 16 7 3.6753 -5.0380 -4.3526 17 6 3.3583 -3.8901 -5.0285 18 1 2.7994 -3.1093 -4.5343 19 6 3.7505 -3.7325 -6.3507 20 7 3.4589 -2.6229 -6.9959 21 14 4.6921 -5.0951 -7.2145 22 1 3.7341 -6.0914 -7.7576 23 1 5.4894 -4.5179 -8.3264 24 1 5.6013 -5.7593 -6.2463 25 8 2.9708 -1.3310 1.1042 26 6 2.4318 -1.9269 2.2860 27 6 3.4385 -1.7912 3.4302 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5401 -0.9352 0.0004 30 1 2.6902 1.3626 -0.8900 31 1 1.3553 2.1336 -0.0005 32 1 2.6902 1.3628 0.8900 33 1 3.5601 -0.6231 -1.3905 34 1 2.1555 -1.4104 -2.1491 35 1 3.9844 -2.1653 -4.1722 36 1 4.6177 -1.0516 -2.9364 37 1 5.7127 -2.1971 -3.7471 38 1 5.3479 -4.6786 -1.3748 39 1 5.9691 -4.3021 -2.9998 40 1 5.8193 -6.4370 -3.9115 41 1 4.6982 -7.5151 -2.9648 42 1 2.8056 -7.0033 -4.4472 43 1 4.1060 -6.6813 -5.6724 44 1 3.6682 -2.5412 -7.9395 45 1 1.5040 -1.4228 2.5565 46 1 2.2314 -2.9823 2.1017 47 1 3.5723 -0.7372 3.6733 48 1 3.0661 -2.3217 4.3066 49 1 4.3941 -2.2182 3.1259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234645240.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:04 Heat of formation + Delta-G solvation = -11.303011 kcal Electronic energy + Delta-G solvation = -27628.050500 eV Core-core repulsion = 23978.817917 eV Total energy + Delta-G solvation = -3649.232583 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20253 -40.04783 -39.04032 -36.17509 -36.08432 -34.50882 -32.72618 -31.41319 -30.56620 -29.28377 -28.21716 -27.25066 -25.35449 -25.12248 -23.64914 -23.55555 -20.94485 -19.95513 -19.75068 -19.12633 -17.98253 -17.66309 -17.33763 -16.87968 -16.78252 -16.46410 -15.87706 -15.42278 -15.22165 -15.00466 -14.80641 -14.58200 -14.33427 -14.17097 -13.96401 -13.73037 -13.37168 -13.27559 -13.18790 -13.13963 -12.86196 -12.77713 -12.72269 -12.63187 -12.51110 -12.40022 -12.14153 -12.01013 -11.85482 -11.72775 -11.53118 -11.25713 -10.67303 -10.51496 -10.44372 -10.09417 -9.37824 -8.67681 -8.04970 -5.55715 1.20032 1.36343 1.43029 1.52452 1.78063 2.24646 2.47960 2.78845 3.13837 3.20664 3.54999 3.79042 3.88649 3.98857 4.03582 4.20116 4.24180 4.26935 4.37882 4.38919 4.47534 4.52387 4.55348 4.59830 4.66974 4.72740 4.73970 4.76243 4.81402 4.85839 4.91561 4.95220 4.96500 4.99122 5.00910 5.08298 5.17122 5.26056 5.42188 5.56410 5.62666 5.73415 5.76792 5.82186 6.24307 6.35028 6.56708 6.63707 7.33494 7.51615 8.49510 9.08225 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.004170 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.471224 B = 6712.889061 C = 7662.052595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.157 4.157 3 C -0.110 4.110 4 C 0.149 3.851 5 H 0.053 0.947 6 C -0.129 4.129 7 C 0.512 3.488 8 O -0.578 6.578 9 N -0.595 5.595 10 C 0.068 3.932 11 C 0.125 3.875 12 C 0.128 3.872 13 H 0.040 0.960 14 C -0.129 4.129 15 C 0.084 3.916 16 N -0.638 5.638 17 C -0.198 4.198 18 H 0.061 0.939 19 C -0.014 4.014 20 N -0.948 5.948 21 Si 0.945 3.055 22 H -0.293 1.293 23 H -0.312 1.312 24 H -0.246 1.246 25 O -0.382 6.382 26 C 0.060 3.940 27 C -0.142 4.142 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.046 0.954 43 H 0.033 0.967 44 H 0.261 0.739 45 H 0.053 0.947 46 H 0.034 0.966 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.200 3.276 15.378 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.157 4.157 3 C -0.167 4.167 4 C 0.090 3.910 5 H 0.071 0.929 6 C -0.169 4.169 7 C 0.302 3.698 8 O -0.459 6.459 9 N -0.325 5.325 10 C -0.075 4.075 11 C 0.001 3.999 12 C 0.021 3.979 13 H 0.058 0.942 14 C -0.167 4.167 15 C -0.040 4.040 16 N -0.367 5.367 17 C -0.326 4.326 18 H 0.078 0.922 19 C -0.210 4.210 20 N -0.593 5.593 21 Si 0.775 3.225 22 H -0.221 1.221 23 H -0.240 1.240 24 H -0.170 1.170 25 O -0.301 6.301 26 C -0.016 4.016 27 C -0.199 4.199 28 H 0.140 0.860 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.106 0.894 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.352 3.264 15.571 15.913 hybrid contribution -0.292 -0.768 -1.200 1.454 sum 0.060 2.497 14.371 14.587 Atomic orbital electron populations 1.23971 0.94728 1.02949 0.99903 1.22243 0.95866 0.96233 1.01371 1.20764 1.00331 0.93148 1.02409 1.20643 0.90314 0.94184 0.85820 0.92875 1.21811 1.00609 0.95909 0.98527 1.20756 0.79281 0.89005 0.80796 1.90580 1.65822 1.52159 1.37298 1.47642 1.44804 1.15192 1.24834 1.22354 1.03099 0.90097 0.91908 1.21676 0.95336 0.82438 1.00467 1.22642 0.94376 0.93259 0.87636 0.94221 1.23431 0.98286 0.97779 0.97200 1.22992 0.96976 0.86598 0.97455 1.46003 1.79984 1.00928 1.09759 1.18162 1.26880 0.92476 0.95131 0.92199 1.25774 0.98870 0.97522 0.98855 1.69826 1.53112 1.26590 1.09815 0.85875 0.79701 0.79448 0.77432 1.22078 1.24049 1.17033 1.87854 1.40311 1.81131 1.20854 1.22500 0.97349 0.96261 0.85537 1.21697 0.98811 1.02929 0.96433 0.86042 0.88697 0.91526 0.90627 0.91477 0.87154 0.87871 0.89612 0.90944 0.92109 0.90645 0.90176 0.89290 0.88396 0.93633 0.94875 0.92992 0.92889 0.94813 0.91483 0.89381 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 13.92 67.79 0.94 -2.78 16 2 C -0.16 -3.70 5.08 -16.48 -0.08 -3.79 16 3 C -0.11 -2.21 9.75 71.23 0.69 -1.51 16 4 C 0.15 4.33 1.90 29.85 0.06 4.39 16 5 H 0.05 1.69 7.32 -2.38 -0.02 1.68 16 6 C -0.13 -4.04 4.11 29.85 0.12 -3.92 16 7 C 0.51 19.33 7.39 87.66 0.65 19.98 16 8 O -0.58 -24.27 15.11 12.30 0.19 -24.09 16 9 N -0.59 -22.36 2.54 -846.74 -2.15 -24.51 16 10 C 0.07 2.50 9.21 127.77 1.18 3.67 16 11 C 0.12 4.52 5.44 86.38 0.47 4.99 16 12 C 0.13 4.94 4.27 41.79 0.18 5.12 16 13 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 14 C -0.13 -4.17 8.03 31.01 0.25 -3.92 16 15 C 0.08 3.34 7.26 83.27 0.60 3.94 16 16 N -0.64 -29.12 3.14 -713.40 -2.24 -31.36 16 17 C -0.20 -10.35 7.77 84.03 0.65 -9.70 16 18 H 0.06 3.43 6.36 -2.91 -0.02 3.41 16 19 C -0.01 -0.75 5.50 84.86 0.47 -0.28 16 20 N -0.95 -54.76 13.96 21.65 0.30 -54.46 16 21 Si 0.94 44.66 25.15 68.60 1.73 46.39 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 23 H -0.31 -15.06 7.11 99.48 0.71 -14.36 16 24 H -0.25 -10.75 6.38 99.48 0.63 -10.12 16 25 O -0.38 -11.57 8.91 -133.64 -1.19 -12.76 16 26 C 0.06 1.55 6.44 71.98 0.46 2.01 16 27 C -0.14 -2.94 10.28 71.98 0.74 -2.20 16 28 H 0.12 2.00 7.83 -2.91 -0.02 1.98 16 29 H 0.09 1.99 7.84 -2.91 -0.02 1.97 16 30 H 0.07 1.34 7.52 -2.39 -0.02 1.32 16 31 H 0.07 1.23 7.78 -2.39 -0.02 1.21 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.11 3.09 6.29 -2.39 -0.02 3.08 16 34 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.09 3.90 4.03 -2.38 -0.01 3.89 16 36 H 0.07 2.23 6.33 -2.39 -0.02 2.22 16 37 H 0.06 2.19 7.84 -2.39 -0.02 2.17 16 38 H 0.08 2.61 7.63 -2.39 -0.02 2.59 16 39 H 0.08 2.79 7.64 -2.39 -0.02 2.77 16 40 H 0.09 2.79 8.01 -2.38 -0.02 2.77 16 41 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.03 1.38 4.01 -2.39 -0.01 1.37 16 44 H 0.26 14.61 8.32 -92.71 -0.77 13.84 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -64.68 381.94 4.86 -59.82 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.84 Total: 24.96 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 7.38 Total: 16.01 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.09 Total: -110.33 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.00 Total: -36.85 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.73 Total: 46.39 kcal Total: -64.68 4.86 -59.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234645240.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.521 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds