Wall clock time and date at job start Fri Apr 10 2020 22:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47092 * 2 1 4 4 C 1.34638 * 117.00241 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00065 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99905 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.62817 * 180.02562 * 6 4 3 8 8 C 1.53186 * 108.77646 * 233.63340 * 7 6 4 9 9 C 1.53041 * 109.31435 * 305.36685 * 8 7 6 10 10 N 1.46910 * 109.45962 * 181.38557 * 9 8 7 11 11 C 1.46842 * 110.99703 * 298.92836 * 10 9 8 12 12 C 1.53039 * 109.52266 * 174.16402 * 11 10 9 13 13 C 1.53123 * 109.31189 * 59.15550 * 12 11 10 14 14 C 1.53129 * 109.15931 * 302.40768 * 13 12 11 15 15 H 1.09000 * 109.46579 * 297.65836 * 14 13 12 16 16 C 1.50698 * 109.53784 * 177.57396 * 14 13 12 17 17 H 1.07998 * 120.00144 * 240.13761 * 16 14 13 18 18 C 1.37881 * 119.99759 * 60.13943 * 16 14 13 19 19 N 1.31516 * 120.00040 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 119.99881 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47297 * 89.99824 * 20 18 16 22 22 H 1.48498 * 109.46908 * 209.99822 * 20 18 16 23 23 H 1.48500 * 109.47068 * 329.99886 * 20 18 16 24 24 C 1.46849 * 110.99768 * 174.71916 * 10 9 8 25 25 C 1.53041 * 109.52825 * 61.37252 * 9 8 7 26 26 C 1.46929 * 120.63287 * 0.03022 * 6 4 3 27 27 H 1.09009 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47371 * 299.99953 * 1 2 3 29 29 H 1.08995 * 109.47115 * 60.00200 * 1 2 3 30 30 H 1.08998 * 109.47371 * 240.00046 * 2 1 3 31 31 H 1.08995 * 109.47115 * 119.99800 * 2 1 3 32 32 H 1.09003 * 109.58401 * 113.84757 * 7 6 4 33 33 H 1.08998 * 109.58556 * 353.42458 * 7 6 4 34 34 H 1.09000 * 109.50041 * 185.41553 * 8 7 6 35 35 H 1.09002 * 109.52414 * 65.33425 * 8 7 6 36 36 H 1.08998 * 109.46280 * 301.35570 * 9 8 7 37 37 H 1.08995 * 109.46659 * 54.14295 * 11 10 9 38 38 H 1.09009 * 109.46400 * 294.17124 * 11 10 9 39 39 H 1.09002 * 109.50563 * 179.11883 * 12 11 10 40 40 H 1.09003 * 109.50107 * 299.19864 * 12 11 10 41 41 H 1.09000 * 109.52057 * 62.27355 * 13 12 11 42 42 H 1.08995 * 109.52240 * 182.46183 * 13 12 11 43 43 H 0.97001 * 119.99741 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46071 * 305.85100 * 24 10 9 45 45 H 1.08995 * 109.46417 * 65.82041 * 24 10 9 46 46 H 1.09003 * 109.49372 * 58.57704 * 25 9 8 47 47 H 1.08990 * 109.49825 * 178.67647 * 25 9 8 48 48 H 1.08999 * 109.58036 * 246.15146 * 26 6 4 49 49 H 1.08997 * 109.58483 * 6.43684 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8638 2.7909 0.0000 7 6 5.3182 2.9994 0.0001 8 6 5.6841 3.9212 1.1676 9 6 4.8643 5.2099 1.0712 10 7 5.2368 6.1102 2.1707 11 6 4.9552 5.4942 3.4736 12 6 5.4872 6.3948 4.5908 13 6 4.8148 7.7674 4.4982 14 6 5.0822 8.3656 3.1141 15 1 6.1542 8.5121 2.9827 16 6 4.3744 9.6905 2.9925 17 1 3.6280 9.8355 2.2256 18 6 4.6800 10.7175 3.8603 19 7 5.5887 10.5406 4.7944 20 14 3.8023 12.3595 3.7100 21 1 2.5784 12.3454 4.5508 22 1 4.7045 13.4467 4.1673 23 1 3.4262 12.5917 2.2923 24 6 4.5619 7.4079 2.0399 25 6 3.3738 4.8765 1.1679 26 6 2.9816 3.9658 -0.0004 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.6210 3.4619 -0.9394 33 1 5.8247 2.0415 0.1181 34 1 6.7463 4.1615 1.1223 35 1 5.4644 3.4199 2.1102 36 1 5.0661 5.6982 0.1179 37 1 5.4430 4.5210 3.5282 38 1 3.8788 5.3679 3.5906 39 1 5.2642 5.9448 5.5582 40 1 6.5657 6.5099 4.4829 41 1 3.7404 7.6573 4.6455 42 1 5.2231 8.4254 5.2651 43 1 5.8033 11.2630 5.4051 44 1 4.7641 7.8245 1.0531 45 1 3.4874 7.2725 2.1635 46 1 3.1757 4.3658 2.1103 47 1 2.7915 5.7967 1.1228 48 1 3.0943 4.5069 -0.9399 49 1 1.9462 3.6454 0.1149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256242571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:41 Heat of formation + Delta-G solvation = -86.707716 kcal Electronic energy + Delta-G solvation = -27025.551187 eV Core-core repulsion = 23373.048811 eV Total energy + Delta-G solvation = -3652.502376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83022 -39.32764 -37.42843 -36.28766 -34.11153 -32.42093 -31.87876 -31.19185 -30.10964 -29.59018 -25.33756 -24.98728 -23.65040 -23.37581 -22.48158 -21.63940 -20.93413 -19.55460 -18.51389 -17.98665 -17.13412 -16.81618 -16.41578 -15.32833 -15.10658 -14.88917 -14.61510 -14.26765 -14.10409 -13.95611 -13.67542 -13.54194 -13.07765 -13.03495 -12.79667 -12.67283 -12.28734 -12.09151 -12.05156 -11.86263 -11.77170 -11.44703 -11.29433 -10.93873 -10.89933 -10.86206 -10.74733 -10.65153 -10.52086 -10.26203 -10.03067 -9.81174 -9.46557 -9.04586 -8.88632 -8.70250 -8.30212 -7.62116 -5.97560 -4.03805 1.96548 2.67427 3.30141 3.37266 3.39819 3.65778 4.32168 4.49359 4.64982 4.67029 4.74078 4.84469 4.96988 4.99361 5.07774 5.18613 5.25937 5.32597 5.38137 5.46939 5.51609 5.62821 5.63451 5.66742 5.75611 5.80618 5.87237 5.90994 6.08529 6.09804 6.18014 6.24919 6.33504 6.40094 6.47103 6.51621 6.72949 6.76540 6.97143 7.17751 7.22364 7.40596 7.66915 7.75179 7.82263 8.08684 8.12696 8.17832 8.47984 9.00454 9.60547 11.08387 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.002878 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.359172 B = 9726.697487 C =10155.076361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.651 3.349 5 O -0.579 6.579 6 N -0.591 5.591 7 C 0.128 3.872 8 C -0.128 4.128 9 C 0.085 3.915 10 N -0.530 5.530 11 C 0.059 3.941 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.055 3.945 15 H 0.033 0.967 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.067 3.933 25 C -0.170 4.170 26 C 0.117 3.883 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.259 0.741 44 H 0.058 0.942 45 H 0.021 0.979 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 -17.922 -8.937 20.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.469 6.469 6 N -0.332 5.332 7 C 0.007 3.993 8 C -0.166 4.166 9 C -0.024 4.024 10 N -0.253 5.253 11 C -0.069 4.069 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.036 3.964 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.060 4.060 25 C -0.210 4.210 26 C -0.006 4.006 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.511 -18.073 -8.812 20.849 hybrid contribution -1.426 0.752 0.099 1.615 sum -6.936 -17.321 -8.713 20.593 Atomic orbital electron populations 1.21828 0.92579 1.03010 1.03605 1.22929 0.94791 0.78891 1.02672 1.86238 1.22225 1.32960 1.87026 1.17992 0.81096 0.84091 0.76316 1.90970 1.59822 1.39463 1.56607 1.47017 1.07705 1.02987 1.75445 1.21712 0.77245 1.01236 0.99104 1.22047 1.01384 0.95026 0.98161 1.21696 0.91367 0.93001 0.96373 1.62241 1.58482 1.03561 1.01000 1.22090 0.97690 0.97136 0.89964 1.21683 1.00969 0.97647 0.95270 1.21650 0.97415 0.93191 1.02570 1.18656 0.97141 0.91272 0.89290 0.94848 1.21144 1.22023 0.96714 1.15442 0.92892 1.24935 0.95068 0.98490 0.95355 1.69894 1.31905 1.32417 1.18474 0.86639 0.79477 0.83844 0.78283 1.20820 1.21263 1.19974 1.22314 0.94865 0.87822 1.00950 1.22674 0.99620 1.00073 0.98649 1.21719 0.94040 0.85718 0.99105 0.90050 0.91406 0.91474 0.91287 0.91251 0.90841 0.88638 0.89346 0.91303 0.90096 0.92261 0.95727 0.93708 0.92148 0.95274 0.89198 0.93071 0.92367 0.96041 0.91242 0.89935 0.91045 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.16 0.38 -0.57 16 2 C 0.08 0.74 6.19 37.16 0.23 0.97 16 3 O -0.37 -4.36 8.86 -40.32 -0.36 -4.72 16 4 C 0.65 8.80 8.43 54.05 0.46 9.25 16 5 O -0.58 -9.21 15.54 -19.28 -0.30 -9.51 16 6 N -0.59 -7.10 2.97 -178.54 -0.53 -7.63 16 7 C 0.13 1.42 6.43 -3.71 -0.02 1.40 16 8 C -0.13 -1.53 5.13 -26.61 -0.14 -1.67 16 9 C 0.08 1.15 2.19 -67.66 -0.15 1.01 16 10 N -0.53 -9.14 4.64 -226.63 -1.05 -10.19 16 11 C 0.06 1.00 4.63 -3.84 -0.02 0.98 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.44 16 13 C -0.11 -2.57 5.03 -26.60 -0.13 -2.70 16 14 C 0.06 1.35 2.26 -91.69 -0.21 1.14 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.51 -13.84 8.56 -34.44 -0.29 -14.14 16 17 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 19 N -0.89 -25.15 11.36 55.43 0.63 -24.52 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 24 C 0.07 1.35 4.25 -3.83 -0.02 1.34 16 25 C -0.17 -2.14 4.65 -26.59 -0.12 -2.27 16 26 C 0.12 1.26 6.45 -3.69 -0.02 1.24 16 27 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 36 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 37 H 0.06 0.91 6.07 -51.93 -0.32 0.60 16 38 H 0.02 0.42 6.65 -51.92 -0.35 0.08 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.36 6.16 -51.93 -0.32 2.04 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 45 H 0.02 0.43 6.70 -51.93 -0.35 0.09 16 46 H 0.07 0.95 6.60 -51.93 -0.34 0.61 16 47 H 0.08 1.10 6.59 -51.93 -0.34 0.76 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.09 0.92 6.92 -51.93 -0.36 0.56 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -30.03 369.11 -9.90 -39.94 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.52 Total: -0.12 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.31 Total: -4.82 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: -0.95 Total: -42.35 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.66 Total: -14.23 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.03 -9.90 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256242571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.770 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds