Wall clock time and date at job start Fri Apr 10 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47092 * 2 1 4 4 C 1.34638 * 117.00241 * 179.97438 * 3 2 1 5 5 O 1.21511 * 120.00065 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99905 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.62817 * 180.02562 * 6 4 3 8 8 C 1.53186 * 108.77646 * 233.63340 * 7 6 4 9 9 C 1.53041 * 109.31435 * 305.36685 * 8 7 6 10 10 N 1.46910 * 109.45962 * 181.38557 * 9 8 7 11 11 C 1.46842 * 110.99703 * 298.92836 * 10 9 8 12 12 C 1.53039 * 109.52266 * 174.16402 * 11 10 9 13 13 C 1.53123 * 109.31189 * 59.15550 * 12 11 10 14 14 C 1.53129 * 109.15931 * 302.40768 * 13 12 11 15 15 H 1.09000 * 109.46579 * 297.65836 * 14 13 12 16 16 C 1.50698 * 109.53784 * 177.57396 * 14 13 12 17 17 H 1.07998 * 120.00144 * 240.13761 * 16 14 13 18 18 C 1.37881 * 119.99759 * 60.13943 * 16 14 13 19 19 N 1.31516 * 120.00040 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 119.99881 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47297 * 89.99824 * 20 18 16 22 22 H 1.48498 * 109.46908 * 209.99822 * 20 18 16 23 23 H 1.48500 * 109.47068 * 329.99886 * 20 18 16 24 24 C 1.46849 * 110.99768 * 174.71916 * 10 9 8 25 25 C 1.53041 * 109.52825 * 61.37252 * 9 8 7 26 26 C 1.46929 * 120.63287 * 0.03022 * 6 4 3 27 27 H 1.09009 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47371 * 299.99953 * 1 2 3 29 29 H 1.08995 * 109.47115 * 60.00200 * 1 2 3 30 30 H 1.08998 * 109.47371 * 240.00046 * 2 1 3 31 31 H 1.08995 * 109.47115 * 119.99800 * 2 1 3 32 32 H 1.09003 * 109.58401 * 113.84757 * 7 6 4 33 33 H 1.08998 * 109.58556 * 353.42458 * 7 6 4 34 34 H 1.09000 * 109.50041 * 185.41553 * 8 7 6 35 35 H 1.09002 * 109.52414 * 65.33425 * 8 7 6 36 36 H 1.08998 * 109.46280 * 301.35570 * 9 8 7 37 37 H 1.08995 * 109.46659 * 54.14295 * 11 10 9 38 38 H 1.09009 * 109.46400 * 294.17124 * 11 10 9 39 39 H 1.09002 * 109.50563 * 179.11883 * 12 11 10 40 40 H 1.09003 * 109.50107 * 299.19864 * 12 11 10 41 41 H 1.09000 * 109.52057 * 62.27355 * 13 12 11 42 42 H 1.08995 * 109.52240 * 182.46183 * 13 12 11 43 43 H 0.97001 * 119.99741 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46071 * 305.85100 * 24 10 9 45 45 H 1.08995 * 109.46417 * 65.82041 * 24 10 9 46 46 H 1.09003 * 109.49372 * 58.57704 * 25 9 8 47 47 H 1.08990 * 109.49825 * 178.67647 * 25 9 8 48 48 H 1.08999 * 109.58036 * 246.15146 * 26 6 4 49 49 H 1.08997 * 109.58483 * 6.43684 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0890 0.5818 0.0005 6 7 3.8638 2.7909 0.0000 7 6 5.3182 2.9994 0.0001 8 6 5.6841 3.9212 1.1676 9 6 4.8643 5.2099 1.0712 10 7 5.2368 6.1102 2.1707 11 6 4.9552 5.4942 3.4736 12 6 5.4872 6.3948 4.5908 13 6 4.8148 7.7674 4.4982 14 6 5.0822 8.3656 3.1141 15 1 6.1542 8.5121 2.9827 16 6 4.3744 9.6905 2.9925 17 1 3.6280 9.8355 2.2256 18 6 4.6800 10.7175 3.8603 19 7 5.5887 10.5406 4.7944 20 14 3.8023 12.3595 3.7100 21 1 2.5784 12.3454 4.5508 22 1 4.7045 13.4467 4.1673 23 1 3.4262 12.5917 2.2923 24 6 4.5619 7.4079 2.0399 25 6 3.3738 4.8765 1.1679 26 6 2.9816 3.9658 -0.0004 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.6210 3.4619 -0.9394 33 1 5.8247 2.0415 0.1181 34 1 6.7463 4.1615 1.1223 35 1 5.4644 3.4199 2.1102 36 1 5.0661 5.6982 0.1179 37 1 5.4430 4.5210 3.5282 38 1 3.8788 5.3679 3.5906 39 1 5.2642 5.9448 5.5582 40 1 6.5657 6.5099 4.4829 41 1 3.7404 7.6573 4.6455 42 1 5.2231 8.4254 5.2651 43 1 5.8033 11.2630 5.4051 44 1 4.7641 7.8245 1.0531 45 1 3.4874 7.2725 2.1635 46 1 3.1757 4.3658 2.1103 47 1 2.7915 5.7967 1.1228 48 1 3.0943 4.5069 -0.9399 49 1 1.9462 3.6454 0.1149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256242571.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:40 Heat of formation + Delta-G solvation = -104.479753 kcal Electronic energy + Delta-G solvation = -27026.321841 eV Core-core repulsion = 23373.048811 eV Total energy + Delta-G solvation = -3653.273030 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81334 -40.55840 -38.59879 -37.39082 -35.67688 -34.01286 -32.76111 -32.11502 -31.63176 -31.06787 -26.96237 -26.41271 -24.62645 -24.39920 -23.55362 -23.25434 -22.03731 -20.80741 -19.95244 -19.07198 -18.40901 -18.04615 -17.70735 -16.89586 -16.40079 -15.99739 -15.78018 -15.53115 -15.22286 -15.12648 -14.96506 -14.67241 -14.50877 -14.18924 -14.13519 -13.64793 -13.61211 -13.37181 -13.13437 -12.89750 -12.85205 -12.71538 -12.62067 -12.51831 -12.45222 -12.35740 -11.98398 -11.74006 -11.64614 -11.55176 -11.53055 -11.42311 -11.31168 -10.75767 -10.63178 -10.34804 -9.86667 -9.01053 -8.05936 -6.19788 1.09547 1.42197 1.43158 1.52989 1.66656 2.44188 2.81330 3.08509 3.21348 3.73496 3.85644 4.00694 4.02938 4.07083 4.11316 4.18510 4.27558 4.34855 4.36814 4.41221 4.43990 4.57164 4.65485 4.71569 4.73470 4.78961 4.81770 4.88675 4.91102 4.92984 4.96269 5.03206 5.07735 5.14035 5.19535 5.24438 5.29388 5.38912 5.44093 5.47987 5.55493 5.65980 6.00340 6.16140 6.21654 6.25364 6.42239 6.49658 6.94055 7.15179 7.48230 8.98651 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023418 B = 0.002878 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.359172 B = 9726.697487 C =10155.076361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.373 6.373 4 C 0.646 3.354 5 O -0.608 6.608 6 N -0.590 5.590 7 C 0.132 3.868 8 C -0.118 4.118 9 C 0.085 3.915 10 N -0.539 5.539 11 C 0.066 3.934 12 C -0.112 4.112 13 C -0.103 4.103 14 C 0.053 3.947 15 H -0.005 1.005 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.952 3.048 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.084 3.916 25 C -0.162 4.162 26 C 0.123 3.877 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.027 0.973 39 H 0.063 0.937 40 H 0.049 0.951 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.259 0.741 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.090 0.910 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -18.892 -10.224 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 O -0.287 6.287 4 C 0.401 3.599 5 O -0.501 6.501 6 N -0.330 5.330 7 C 0.011 3.989 8 C -0.156 4.156 9 C -0.024 4.024 10 N -0.262 5.262 11 C -0.061 4.061 12 C -0.150 4.150 13 C -0.141 4.141 14 C 0.034 3.966 15 H 0.013 0.987 16 C -0.572 4.572 17 H 0.072 0.928 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.778 3.222 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.044 4.044 25 C -0.202 4.202 26 C 0.001 3.999 27 H 0.122 0.878 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.777 -19.048 -10.111 22.605 hybrid contribution -1.026 1.030 0.507 1.539 sum -7.802 -18.018 -9.604 21.858 Atomic orbital electron populations 1.21840 0.90259 1.04504 1.03641 1.23214 0.96543 0.77753 1.02537 1.86254 1.21185 1.34531 1.86688 1.18181 0.81479 0.84151 0.76053 1.90946 1.60594 1.40467 1.58052 1.47136 1.08206 1.02883 1.74785 1.21734 0.76823 1.00808 0.99570 1.21949 1.01383 0.94046 0.98232 1.21791 0.92432 0.92977 0.95156 1.62149 1.58505 1.03270 1.02281 1.22023 0.97876 0.97308 0.88932 1.21594 0.99894 0.95921 0.97542 1.21455 0.96918 0.94918 1.00852 1.18584 0.94601 0.91967 0.91475 0.98719 1.21542 1.22116 0.98148 1.15344 0.92846 1.25723 0.95806 1.01970 0.95102 1.70045 1.33168 1.33301 1.19139 0.85644 0.78343 0.79616 0.78574 1.20293 1.21136 1.19094 1.21944 0.94701 0.88587 0.99132 1.22557 0.98579 1.00034 0.99025 1.21737 0.94136 0.84971 0.99061 0.87825 0.91577 0.91145 0.91207 0.91696 0.88761 0.89189 0.88814 0.92165 0.89293 0.89910 0.95531 0.91813 0.93195 0.96026 0.92674 0.93185 0.92351 0.96007 0.92272 0.90574 0.89154 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.07 1.23 6.19 71.98 0.45 1.68 16 3 O -0.37 -8.19 8.86 -55.47 -0.49 -8.68 16 4 C 0.65 16.51 8.43 129.79 1.09 17.61 16 5 O -0.61 -18.80 15.54 19.81 0.31 -18.50 16 6 N -0.59 -12.87 2.97 -949.17 -2.82 -15.69 16 7 C 0.13 2.60 6.43 86.36 0.56 3.16 16 8 C -0.12 -2.55 5.13 30.67 0.16 -2.39 16 9 C 0.08 2.13 2.19 44.94 0.10 2.23 16 10 N -0.54 -17.96 4.64 -870.94 -4.04 -22.01 16 11 C 0.07 2.16 4.63 86.33 0.40 2.56 16 12 C -0.11 -4.28 6.09 30.65 0.19 -4.10 16 13 C -0.10 -4.93 5.03 30.68 0.15 -4.77 16 14 C 0.05 2.63 2.26 -11.49 -0.03 2.60 16 15 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 16 C -0.53 -29.14 8.56 25.60 0.22 -28.92 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.69 5.31 84.66 0.45 1.14 16 19 N -0.92 -53.38 11.36 21.45 0.24 -53.14 16 20 Si 0.95 43.45 29.54 68.60 2.03 45.47 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 24 C 0.08 3.35 4.25 86.32 0.37 3.71 16 25 C -0.16 -3.73 4.65 30.69 0.14 -3.59 16 26 C 0.12 2.33 6.45 86.38 0.56 2.89 16 27 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.94 7.00 -2.39 -0.02 1.93 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.42 6.38 -2.39 -0.02 1.41 16 36 H 0.09 2.13 8.07 -2.39 -0.02 2.11 16 37 H 0.08 2.35 6.07 -2.39 -0.01 2.34 16 38 H 0.03 0.87 6.65 -2.38 -0.02 0.85 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 3.01 6.16 -2.39 -0.01 2.99 16 43 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 45 H 0.02 0.87 6.70 -2.39 -0.02 0.85 16 46 H 0.06 1.50 6.60 -2.39 -0.02 1.48 16 47 H 0.08 1.88 6.59 -2.39 -0.02 1.87 16 48 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.10 1.73 6.92 -2.39 -0.02 1.71 16 Total: -1.00 -65.88 369.11 1.68 -64.20 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.91 Total: 15.29 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 5.54 Total: -6.96 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -6.62 Total: -90.83 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.18 Total: -27.17 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.88 1.68 -64.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256242571.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.276 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds