Wall clock time and date at job start Fri Apr 10 2020 22:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47146 * 2 1 4 4 C 1.34643 * 117.00258 * 179.97438 * 3 2 1 5 5 O 1.21510 * 119.99653 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00074 * 179.97438 * 4 3 2 7 7 C 1.46931 * 120.63005 * 180.02562 * 6 4 3 8 8 C 1.53187 * 108.77593 * 233.63498 * 7 6 4 9 9 C 1.53048 * 109.30904 * 305.35845 * 8 7 6 10 10 N 1.46899 * 109.45767 * 181.38780 * 9 8 7 11 11 C 1.46843 * 111.00024 * 55.79391 * 10 9 8 12 12 C 1.53045 * 109.52087 * 185.83789 * 11 10 9 13 13 C 1.53120 * 109.27727 * 300.81903 * 12 11 10 14 14 C 1.53121 * 109.16081 * 57.65743 * 13 12 11 15 15 H 1.08998 * 109.53528 * 62.30136 * 14 13 12 16 16 C 1.50694 * 109.50414 * 182.40361 * 14 13 12 17 17 H 1.08000 * 120.00563 * 119.80197 * 16 14 13 18 18 C 1.37885 * 119.99902 * 299.80360 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.46847 * 110.99849 * 180.02562 * 10 9 8 25 25 C 1.53047 * 109.53415 * 61.36979 * 9 8 7 26 26 C 1.46922 * 120.63344 * 0.02562 * 6 4 3 27 27 H 1.09000 * 109.47219 * 300.00100 * 1 2 3 28 28 H 1.09005 * 109.47174 * 60.00040 * 1 2 3 29 29 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47219 * 239.99900 * 2 1 3 31 31 H 1.09005 * 109.47174 * 119.99960 * 2 1 3 32 32 H 1.08999 * 109.58688 * 113.83785 * 7 6 4 33 33 H 1.09010 * 109.58561 * 353.41802 * 7 6 4 34 34 H 1.09004 * 109.49503 * 185.41556 * 8 7 6 35 35 H 1.08995 * 109.50510 * 65.31458 * 8 7 6 36 36 H 1.08990 * 109.46246 * 301.36143 * 9 8 7 37 37 H 1.08999 * 109.46483 * 305.84832 * 11 10 9 38 38 H 1.08996 * 109.46166 * 65.83302 * 11 10 9 39 39 H 1.08996 * 109.50445 * 60.76486 * 12 11 10 40 40 H 1.09006 * 109.49813 * 180.84046 * 12 11 10 41 41 H 1.09005 * 109.52183 * 297.75118 * 13 12 11 42 42 H 1.08995 * 109.52073 * 177.56370 * 13 12 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46450 * 54.14264 * 24 10 9 45 45 H 1.09001 * 109.45399 * 294.17504 * 24 10 9 46 46 H 1.09001 * 109.49502 * 58.58213 * 25 9 8 47 47 H 1.09000 * 109.49566 * 178.68095 * 25 9 8 48 48 H 1.08999 * 109.58672 * 246.15823 * 26 6 4 49 49 H 1.08997 * 109.58749 * 6.58506 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0889 0.5818 0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9994 0.0001 8 6 5.6842 3.9211 1.1676 9 6 4.8645 5.2099 1.0710 10 7 5.2369 6.1103 2.1704 11 6 6.6814 6.3741 2.1682 12 6 7.0536 7.1933 3.4062 13 6 6.2750 8.5117 3.3928 14 6 4.7747 8.2090 3.3463 15 1 4.4852 7.6623 4.2437 16 6 4.0027 9.5011 3.2732 17 1 3.3579 9.6980 2.4295 18 6 4.1196 10.4320 4.2836 19 7 4.9044 10.1921 5.3113 20 14 3.1631 12.0340 4.1927 21 1 3.9787 13.0584 3.4923 22 1 1.8981 11.8136 3.4468 23 1 2.8522 12.5035 5.5668 24 6 4.4683 7.3601 2.1104 25 6 3.3738 4.8768 1.1675 26 6 2.9818 3.9658 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.6211 3.4617 -0.9394 33 1 5.8248 2.0414 0.1182 34 1 6.7465 4.1614 1.1223 35 1 5.4640 3.4197 2.1100 36 1 5.0663 5.6981 0.1177 37 1 7.2234 5.4285 2.1821 38 1 6.9473 6.9320 1.2704 39 1 6.8006 6.6304 4.3046 40 1 8.1235 7.4017 3.3965 41 1 6.5568 9.0923 2.5143 42 1 6.5043 9.0793 4.2946 43 1 4.9869 10.8472 6.0219 44 1 3.4031 7.1305 2.0822 45 1 4.7444 7.9133 1.2126 46 1 3.1754 4.3662 2.1099 47 1 2.7917 5.7972 1.1222 48 1 3.0944 4.5068 -0.9400 49 1 1.9466 3.6456 0.1173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256242578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:43 Heat of formation + Delta-G solvation = -85.447728 kcal Electronic energy + Delta-G solvation = -26881.124086 eV Core-core repulsion = 23228.676346 eV Total energy + Delta-G solvation = -3652.447739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77923 -39.16823 -37.45010 -36.29481 -34.08349 -32.45790 -31.93143 -31.29477 -29.97767 -29.68523 -25.33108 -25.08556 -23.65878 -23.24796 -22.44387 -21.06579 -20.90697 -19.71142 -18.64626 -18.15380 -17.11631 -16.81090 -16.41173 -15.49734 -15.01211 -14.81836 -14.59390 -14.32244 -14.22221 -13.85873 -13.60293 -13.27862 -13.05713 -12.99951 -12.70607 -12.48165 -12.46062 -12.36417 -12.10787 -11.82851 -11.74855 -11.37070 -11.27086 -10.96494 -10.89363 -10.74367 -10.71343 -10.60314 -10.46067 -10.32414 -9.97172 -9.82395 -9.42883 -9.02261 -8.87929 -8.68473 -8.30126 -7.66298 -5.97515 -4.03739 1.98839 2.70298 3.30193 3.37287 3.39828 3.68309 4.28436 4.47784 4.68411 4.69866 4.77934 4.79105 4.99759 5.02649 5.17871 5.21000 5.28970 5.32746 5.44605 5.49901 5.51365 5.61467 5.64888 5.69415 5.77667 5.78584 5.83119 5.96029 6.08893 6.18078 6.23612 6.27758 6.34469 6.37397 6.47579 6.52059 6.72263 6.76514 6.98662 7.20583 7.22334 7.40748 7.67009 7.75303 7.82903 8.08859 8.15383 8.17876 8.48178 9.00496 9.60589 11.08456 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002979 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.349453 B = 9397.510171 C =10427.140960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.651 3.349 5 O -0.580 6.580 6 N -0.591 5.591 7 C 0.129 3.871 8 C -0.131 4.131 9 C 0.086 3.914 10 N -0.534 5.534 11 C 0.060 3.940 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.055 3.945 15 H 0.034 0.966 16 C -0.515 4.515 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.282 1.282 22 H -0.275 1.275 23 H -0.287 1.287 24 C 0.066 3.934 25 C -0.130 4.130 26 C 0.114 3.886 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.029 0.971 42 H 0.090 0.910 43 H 0.259 0.741 44 H 0.063 0.937 45 H 0.017 0.983 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.069 0.931 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -16.384 -11.219 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.406 3.594 5 O -0.469 6.469 6 N -0.331 5.331 7 C 0.008 3.992 8 C -0.169 4.169 9 C -0.023 4.023 10 N -0.259 5.259 11 C -0.068 4.068 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.037 3.963 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.071 0.929 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.718 3.282 21 H -0.208 1.208 22 H -0.200 1.200 23 H -0.213 1.213 24 C -0.061 4.061 25 C -0.168 4.168 26 C -0.009 4.009 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.103 0.897 48 H 0.088 0.912 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.167 -16.881 -10.608 20.187 hybrid contribution -0.226 1.351 -0.766 1.570 sum -3.393 -15.529 -11.374 19.546 Atomic orbital electron populations 1.21829 0.92570 1.02992 1.03640 1.22930 0.94799 0.78890 1.02655 1.86240 1.22167 1.32952 1.87007 1.17979 0.81113 0.84053 0.76257 1.90967 1.59849 1.39476 1.56641 1.46993 1.07595 1.03062 1.75458 1.21694 0.77493 1.01209 0.98819 1.22105 1.00464 0.95506 0.98836 1.21515 0.94529 0.93063 0.93220 1.62024 1.05270 1.15763 1.42799 1.22093 0.88393 0.98392 0.97907 1.21674 0.98363 0.98514 0.96947 1.21654 0.97148 0.93937 1.02148 1.18651 0.92278 0.93174 0.92227 0.94824 1.21146 1.26152 1.02066 1.05974 0.92897 1.24936 0.95363 0.98218 0.95326 1.69895 1.37906 1.35257 1.09630 0.86641 0.80397 0.83995 0.77214 1.20819 1.19964 1.21263 1.22363 0.96414 0.87643 0.99677 1.22055 0.96247 0.99934 0.98584 1.21813 0.94254 0.85691 0.99140 0.91325 0.91499 0.90083 0.91343 0.91217 0.91165 0.88602 0.90076 0.90451 0.94703 0.91981 0.96014 0.92136 0.93609 0.95248 0.89192 0.93071 0.91888 0.96454 0.90474 0.89697 0.91243 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.15 0.38 -0.58 16 2 C 0.08 0.75 6.19 37.15 0.23 0.98 16 3 O -0.37 -4.39 8.86 -40.33 -0.36 -4.74 16 4 C 0.65 8.90 8.43 54.05 0.46 9.36 16 5 O -0.58 -9.30 15.54 -19.28 -0.30 -9.60 16 6 N -0.59 -7.22 2.97 -178.54 -0.53 -7.75 16 7 C 0.13 1.46 6.43 -3.71 -0.02 1.43 16 8 C -0.13 -1.59 5.05 -26.61 -0.13 -1.73 16 9 C 0.09 1.20 1.91 -67.66 -0.13 1.07 16 10 N -0.53 -9.34 4.52 -226.64 -1.03 -10.37 16 11 C 0.06 1.01 5.14 -3.83 -0.02 0.99 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C -0.11 -2.59 5.03 -26.61 -0.13 -2.72 16 14 C 0.06 1.36 2.26 -91.70 -0.21 1.15 16 15 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.51 -13.87 8.56 -34.44 -0.29 -14.17 16 17 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.17 11.37 55.43 0.63 -24.54 16 20 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.07 1.34 4.44 -3.84 -0.02 1.32 16 25 C -0.13 -1.68 5.18 -26.59 -0.14 -1.82 16 26 C 0.11 1.24 6.45 -3.70 -0.02 1.22 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.13 7.00 -51.92 -0.36 0.77 16 34 H 0.08 0.92 6.14 -51.93 -0.32 0.60 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.91 5.87 -51.93 -0.30 0.60 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 2.36 6.17 -51.93 -0.32 2.04 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.25 5.98 -51.93 -0.31 0.94 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.08 1.14 6.21 -51.93 -0.32 0.81 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.09 0.96 6.93 -51.93 -0.36 0.60 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -30.24 371.49 -9.92 -40.16 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.61 Total: -0.50 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -0.31 Total: -4.29 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.93 Total: -42.65 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.66 Total: -14.35 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.24 -9.92 -40.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256242578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.284 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds