Wall clock time and date at job start Fri Apr 10 2020 22:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45200 * 109.47146 * 2 1 4 4 C 1.34643 * 117.00258 * 179.97438 * 3 2 1 5 5 O 1.21510 * 119.99653 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00074 * 179.97438 * 4 3 2 7 7 C 1.46931 * 120.63005 * 180.02562 * 6 4 3 8 8 C 1.53187 * 108.77593 * 233.63498 * 7 6 4 9 9 C 1.53048 * 109.30904 * 305.35845 * 8 7 6 10 10 N 1.46899 * 109.45767 * 181.38780 * 9 8 7 11 11 C 1.46843 * 111.00024 * 55.79391 * 10 9 8 12 12 C 1.53045 * 109.52087 * 185.83789 * 11 10 9 13 13 C 1.53120 * 109.27727 * 300.81903 * 12 11 10 14 14 C 1.53121 * 109.16081 * 57.65743 * 13 12 11 15 15 H 1.08998 * 109.53528 * 62.30136 * 14 13 12 16 16 C 1.50694 * 109.50414 * 182.40361 * 14 13 12 17 17 H 1.08000 * 120.00563 * 119.80197 * 16 14 13 18 18 C 1.37885 * 119.99902 * 299.80360 * 16 14 13 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.46847 * 110.99849 * 180.02562 * 10 9 8 25 25 C 1.53047 * 109.53415 * 61.36979 * 9 8 7 26 26 C 1.46922 * 120.63344 * 0.02562 * 6 4 3 27 27 H 1.09000 * 109.47219 * 300.00100 * 1 2 3 28 28 H 1.09005 * 109.47174 * 60.00040 * 1 2 3 29 29 H 1.09002 * 109.47076 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47219 * 239.99900 * 2 1 3 31 31 H 1.09005 * 109.47174 * 119.99960 * 2 1 3 32 32 H 1.08999 * 109.58688 * 113.83785 * 7 6 4 33 33 H 1.09010 * 109.58561 * 353.41802 * 7 6 4 34 34 H 1.09004 * 109.49503 * 185.41556 * 8 7 6 35 35 H 1.08995 * 109.50510 * 65.31458 * 8 7 6 36 36 H 1.08990 * 109.46246 * 301.36143 * 9 8 7 37 37 H 1.08999 * 109.46483 * 305.84832 * 11 10 9 38 38 H 1.08996 * 109.46166 * 65.83302 * 11 10 9 39 39 H 1.08996 * 109.50445 * 60.76486 * 12 11 10 40 40 H 1.09006 * 109.49813 * 180.84046 * 12 11 10 41 41 H 1.09005 * 109.52183 * 297.75118 * 13 12 11 42 42 H 1.08995 * 109.52073 * 177.56370 * 13 12 11 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.46450 * 54.14264 * 24 10 9 45 45 H 1.09001 * 109.45399 * 294.17504 * 24 10 9 46 46 H 1.09001 * 109.49502 * 58.58213 * 25 9 8 47 47 H 1.09000 * 109.49566 * 178.68095 * 25 9 8 48 48 H 1.08999 * 109.58672 * 246.15823 * 26 6 4 49 49 H 1.08997 * 109.58749 * 6.58506 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0889 0.5818 0.0005 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9994 0.0001 8 6 5.6842 3.9211 1.1676 9 6 4.8645 5.2099 1.0710 10 7 5.2369 6.1103 2.1704 11 6 6.6814 6.3741 2.1682 12 6 7.0536 7.1933 3.4062 13 6 6.2750 8.5117 3.3928 14 6 4.7747 8.2090 3.3463 15 1 4.4852 7.6623 4.2437 16 6 4.0027 9.5011 3.2732 17 1 3.3579 9.6980 2.4295 18 6 4.1196 10.4320 4.2836 19 7 4.9044 10.1921 5.3113 20 14 3.1631 12.0340 4.1927 21 1 3.9787 13.0584 3.4923 22 1 1.8981 11.8136 3.4468 23 1 2.8522 12.5035 5.5668 24 6 4.4683 7.3601 2.1104 25 6 3.3738 4.8768 1.1675 26 6 2.9818 3.9658 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 5.6211 3.4617 -0.9394 33 1 5.8248 2.0414 0.1182 34 1 6.7465 4.1614 1.1223 35 1 5.4640 3.4197 2.1100 36 1 5.0663 5.6981 0.1177 37 1 7.2234 5.4285 2.1821 38 1 6.9473 6.9320 1.2704 39 1 6.8006 6.6304 4.3046 40 1 8.1235 7.4017 3.3965 41 1 6.5568 9.0923 2.5143 42 1 6.5043 9.0793 4.2946 43 1 4.9869 10.8472 6.0219 44 1 3.4031 7.1305 2.0822 45 1 4.7444 7.9133 1.2126 46 1 3.1754 4.3662 2.1099 47 1 2.7917 5.7972 1.1222 48 1 3.0944 4.5068 -0.9400 49 1 1.9466 3.6456 0.1173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256242578.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:42 Heat of formation + Delta-G solvation = -103.347229 kcal Electronic energy + Delta-G solvation = -26881.900266 eV Core-core repulsion = 23228.676346 eV Total energy + Delta-G solvation = -3653.223920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77087 -40.41664 -38.64632 -37.39229 -35.66389 -34.06203 -32.81139 -32.31256 -31.38379 -31.21385 -27.01085 -26.39603 -24.73358 -24.40656 -23.52442 -22.58762 -22.03378 -20.75829 -20.34714 -19.15719 -18.41307 -18.05193 -17.72265 -16.97886 -16.44533 -15.91435 -15.72845 -15.60949 -15.43833 -14.95113 -14.78302 -14.55931 -14.45794 -14.23960 -13.89174 -13.84027 -13.69628 -13.53218 -13.12031 -12.91358 -12.83654 -12.68541 -12.63672 -12.49154 -12.46352 -12.24578 -11.93572 -11.77185 -11.66825 -11.59090 -11.51818 -11.36944 -11.18791 -10.78721 -10.57697 -10.33656 -9.85715 -9.06492 -8.06300 -6.20260 1.10409 1.41952 1.42809 1.52745 1.67746 2.43824 2.81847 3.04503 3.20933 3.73968 3.80538 4.03960 4.04621 4.09971 4.12114 4.24095 4.29738 4.34563 4.36162 4.45065 4.49787 4.58964 4.63262 4.68330 4.72459 4.74804 4.79236 4.89197 4.93968 4.94621 4.96162 5.05191 5.13799 5.15303 5.16246 5.26380 5.37834 5.40484 5.41430 5.46972 5.56015 5.65740 6.00137 6.16384 6.22937 6.24818 6.43917 6.49529 6.93571 7.16083 7.47754 8.98297 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002979 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.349453 B = 9397.510171 C =10427.140960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.372 6.372 4 C 0.647 3.353 5 O -0.609 6.609 6 N -0.591 5.591 7 C 0.132 3.868 8 C -0.121 4.121 9 C 0.086 3.914 10 N -0.546 5.546 11 C 0.064 3.936 12 C -0.111 4.111 13 C -0.105 4.105 14 C 0.053 3.947 15 H -0.007 1.007 16 C -0.533 4.533 17 H 0.053 0.947 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.953 3.047 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.286 1.286 24 C 0.082 3.918 25 C -0.125 4.125 26 C 0.121 3.879 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.028 0.972 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.022 0.978 42 H 0.054 0.946 43 H 0.259 0.741 44 H 0.064 0.936 45 H 0.014 0.986 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 -16.992 -13.176 21.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.286 6.286 4 C 0.402 3.598 5 O -0.501 6.501 6 N -0.331 5.331 7 C 0.011 3.989 8 C -0.159 4.159 9 C -0.022 4.022 10 N -0.271 5.271 11 C -0.064 4.064 12 C -0.149 4.149 13 C -0.143 4.143 14 C 0.034 3.966 15 H 0.011 0.989 16 C -0.572 4.572 17 H 0.071 0.929 18 C -0.186 4.186 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.202 1.202 22 H -0.191 1.191 23 H -0.211 1.211 24 C -0.045 4.045 25 C -0.164 4.164 26 C -0.001 4.001 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.033 0.967 46 H 0.078 0.922 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.535 -17.491 -12.577 21.832 hybrid contribution -0.132 1.507 -0.118 1.517 sum -3.667 -15.984 -12.695 20.739 Atomic orbital electron populations 1.21840 0.90252 1.04494 1.03668 1.23216 0.96554 0.77751 1.02525 1.86256 1.21140 1.34533 1.86668 1.18174 0.81501 0.84127 0.76001 1.90942 1.60611 1.40463 1.58086 1.47132 1.08187 1.02958 1.74792 1.21739 0.77004 1.00839 0.99341 1.22014 1.00920 0.94423 0.98549 1.21619 0.95347 0.92986 0.92286 1.61946 1.05483 1.14621 1.45029 1.22093 0.88238 0.99505 0.96550 1.21586 0.99042 0.96366 0.97900 1.21466 0.97129 0.95766 0.99936 1.18575 0.92805 0.92696 0.92523 0.98852 1.21544 1.26417 1.03257 1.05994 0.92877 1.25728 0.96300 1.01517 0.95057 1.70048 1.39112 1.36269 1.10224 0.85639 0.79309 0.79999 0.77202 1.20243 1.19079 1.21134 1.21997 0.97028 0.88385 0.97130 1.21985 0.95701 0.99935 0.98750 1.21820 0.94372 0.84905 0.99003 0.91581 0.91104 0.87836 0.91164 0.91745 0.88856 0.89098 0.88638 0.92109 0.93576 0.88868 0.95396 0.93457 0.91389 0.95918 0.92715 0.93181 0.91748 0.96730 0.92248 0.90233 0.89169 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 71.98 0.74 -0.83 16 2 C 0.07 1.27 6.19 71.98 0.45 1.71 16 3 O -0.37 -8.39 8.86 -55.52 -0.49 -8.88 16 4 C 0.65 16.92 8.43 129.79 1.09 18.01 16 5 O -0.61 -19.11 15.54 19.81 0.31 -18.81 16 6 N -0.59 -13.28 2.97 -949.19 -2.82 -16.10 16 7 C 0.13 2.64 6.43 86.36 0.56 3.19 16 8 C -0.12 -2.65 5.05 30.67 0.15 -2.50 16 9 C 0.09 2.21 1.91 44.95 0.09 2.30 16 10 N -0.55 -18.47 4.52 -870.95 -3.94 -22.41 16 11 C 0.06 2.01 5.14 86.33 0.44 2.45 16 12 C -0.11 -4.20 6.09 30.65 0.19 -4.02 16 13 C -0.10 -5.00 5.03 30.67 0.15 -4.85 16 14 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 15 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 16 C -0.53 -29.32 8.56 25.60 0.22 -29.10 16 17 H 0.05 2.84 7.74 -2.91 -0.02 2.82 16 18 C 0.01 0.70 5.30 84.66 0.45 1.14 16 19 N -0.92 -53.54 11.37 21.45 0.24 -53.29 16 20 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.08 3.32 4.44 86.32 0.38 3.70 16 25 C -0.13 -3.06 5.18 30.69 0.16 -2.91 16 26 C 0.12 2.37 6.45 86.37 0.56 2.93 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.97 7.00 -2.38 -0.02 1.95 16 34 H 0.10 1.83 6.14 -2.39 -0.01 1.82 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 2.41 5.87 -2.39 -0.01 2.39 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.05 2.99 6.17 -2.39 -0.01 2.97 16 43 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.06 2.55 5.98 -2.39 -0.01 2.54 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 2.04 6.21 -2.39 -0.01 2.03 16 48 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.10 1.85 6.93 -2.39 -0.02 1.83 16 Total: -1.00 -66.96 371.49 1.84 -65.12 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.91 Total: 14.92 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.60 Total: -6.12 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -6.52 Total: -91.80 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.18 Total: -27.69 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -66.96 1.84 -65.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256242578.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.228 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds