Wall clock time and date at job start Fri Apr 10 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47542 * 2 1 4 4 C 1.53005 * 109.47062 * 239.99621 * 2 1 3 5 5 C 1.50697 * 109.46922 * 60.00269 * 4 2 1 6 6 H 1.08007 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00155 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47307 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47238 * 119.99870 * 9 7 5 12 12 H 1.48501 * 109.47389 * 240.00171 * 9 7 5 13 13 C 1.53008 * 109.47190 * 120.00138 * 2 1 3 14 14 N 1.46498 * 109.46986 * 299.99674 * 13 2 1 15 15 C 1.34766 * 120.00124 * 180.02562 * 14 13 2 16 16 O 1.21585 * 120.00174 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00094 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99976 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47325 * 180.02562 * 18 17 15 20 20 C 1.52997 * 117.50186 * 140.22097 * 19 18 17 21 21 C 1.52997 * 117.49881 * 0.02562 * 20 19 18 22 22 C 1.52996 * 117.50025 * 145.02088 * 20 19 18 23 23 C 1.52993 * 117.49764 * 71.55836 * 19 18 17 24 24 C 1.53005 * 117.49959 * 214.98314 * 23 19 18 25 25 C 1.53001 * 117.50158 * 359.97438 * 23 19 18 26 26 H 1.09002 * 109.47099 * 300.00083 * 1 2 3 27 27 H 1.08997 * 109.47239 * 60.00318 * 1 2 3 28 28 H 1.09005 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47529 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47086 * 300.00151 * 3 2 1 31 31 H 1.09002 * 109.46991 * 59.99851 * 3 2 1 32 32 H 1.08996 * 109.47171 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.47047 * 300.00259 * 4 2 1 34 34 H 0.97009 * 119.99866 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47094 * 179.97438 * 13 2 1 36 36 H 1.08995 * 109.46811 * 59.99466 * 13 2 1 37 37 H 0.97004 * 119.99870 * 359.97438 * 14 13 2 38 38 H 0.96997 * 119.99821 * 0.02562 * 17 15 14 39 39 H 1.09003 * 109.47364 * 300.00225 * 18 17 15 40 40 H 1.09002 * 109.47262 * 59.99519 * 18 17 15 41 41 H 1.09005 * 115.54548 * 285.89505 * 19 18 17 42 42 H 1.08991 * 109.47413 * 172.93077 * 21 20 19 43 43 H 1.09008 * 109.46866 * 292.93000 * 21 20 19 44 44 H 1.09000 * 109.47523 * 52.92373 * 21 20 19 45 45 H 1.09007 * 109.47104 * 8.60719 * 22 20 19 46 46 H 1.09000 * 109.47589 * 128.60545 * 22 20 19 47 47 H 1.08996 * 109.47393 * 248.61007 * 22 20 19 48 48 H 1.08998 * 109.47136 * 111.39200 * 24 23 19 49 49 H 1.09001 * 109.46719 * 231.39430 * 24 23 19 50 50 H 1.09001 * 109.46908 * 351.38961 * 24 23 19 51 51 H 1.08995 * 109.47107 * 8.60440 * 25 23 19 52 52 H 1.08994 * 109.47112 * 128.60734 * 25 23 19 53 53 H 1.08998 * 109.46889 * 248.60461 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5376 -0.0110 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6279 -1.5504 -3.8526 9 14 1.2479 0.3984 -5.2571 10 1 0.4225 1.5649 -4.8530 11 1 2.4026 0.8660 -6.0654 12 1 0.4235 -0.5355 -6.0656 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5774 -1.4788 3.7811 17 7 1.4280 0.1443 4.7700 18 6 1.7829 -0.3555 6.1005 19 6 1.1485 0.5391 7.1674 20 6 0.5682 -0.1432 8.4077 21 6 0.6672 -1.6679 8.4867 22 6 0.6886 0.5958 9.7420 23 6 -0.3677 0.4514 7.3524 24 6 -1.1111 1.7392 7.7128 25 6 -1.1336 -0.5237 6.4561 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7210 -1.2495 33 1 1.6765 -1.7490 -1.2492 34 1 2.8623 -1.8819 -4.7336 35 1 3.1299 -0.7217 1.2490 36 1 1.6765 -1.7489 1.2493 37 1 0.9943 0.7582 2.3564 38 1 0.8695 0.9323 4.6809 39 1 1.4146 -1.3749 6.2159 40 1 2.8668 -0.3457 6.2152 41 1 1.6164 1.5144 7.3019 42 1 0.3322 -2.0035 9.4680 43 1 0.0378 -2.1133 7.7161 44 1 1.7020 -1.9734 8.3319 45 1 1.0579 1.6061 9.5657 46 1 -0.2899 0.6449 10.2198 47 1 1.3835 0.0630 10.3910 48 1 -1.7360 2.0450 6.8737 49 1 -1.7374 1.5645 8.5876 50 1 -0.3894 2.5256 7.9339 51 1 -0.4259 -1.1379 5.8993 52 1 -1.7646 -1.1644 7.0721 53 1 -1.7560 0.0365 5.7583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355824883.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:05 Heat of formation + Delta-G solvation = -39.600254 kcal Electronic energy + Delta-G solvation = -26567.153264 eV Core-core repulsion = 23052.526715 eV Total energy + Delta-G solvation = -3514.626549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.47102 -39.41750 -37.16481 -34.32998 -33.50224 -32.02921 -31.48993 -29.43766 -28.75219 -27.08384 -26.55480 -26.48345 -26.22520 -24.77542 -22.74070 -20.62757 -19.82788 -18.65371 -18.03620 -17.49484 -16.39004 -16.11355 -15.82612 -15.20794 -14.96650 -14.64223 -14.48510 -14.18447 -13.90200 -13.71279 -13.50566 -13.08034 -12.97897 -12.73437 -12.71778 -12.66979 -12.51332 -12.29520 -12.22149 -12.08934 -12.05358 -11.99946 -11.33259 -11.11722 -11.07737 -11.00547 -10.82351 -10.62318 -10.37211 -10.21902 -10.15938 -9.84997 -9.78926 -9.61867 -9.17418 -9.06842 -8.89412 -8.47441 -8.34710 -5.98507 -3.99573 2.77572 3.30906 3.37759 3.39180 3.41495 3.48060 4.18219 4.28217 4.33187 4.46131 4.61110 4.73328 4.77732 4.97725 5.12867 5.23355 5.25674 5.34288 5.37096 5.47755 5.52568 5.53893 5.59766 5.61822 5.64978 5.66935 5.68001 5.70765 5.72760 5.78405 5.84777 5.95651 6.03393 6.13659 6.21074 6.25668 6.32167 6.45027 6.54777 6.63905 6.65617 6.85114 7.09380 7.10294 7.11974 7.20076 7.66786 7.79263 8.00535 8.26122 8.42517 8.86275 9.05508 9.63389 11.12985 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.031290 B = 0.002309 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.653299 B =12123.650581 C =12481.930460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.072 4.072 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.699 3.301 16 O -0.596 6.596 17 N -0.747 5.747 18 C 0.168 3.832 19 C -0.158 4.158 20 C -0.107 4.107 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.123 4.123 26 H 0.028 0.972 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.056 0.944 51 H 0.068 0.932 52 H 0.058 0.942 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 6.478 26.179 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.548 4.548 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.024 3.976 14 N -0.393 5.393 15 C 0.399 3.601 16 O -0.475 6.475 17 N -0.403 5.403 18 C 0.044 3.956 19 C -0.176 4.176 20 C -0.108 4.108 21 C -0.181 4.181 22 C -0.170 4.170 23 C -0.114 4.114 24 C -0.171 4.171 25 C -0.180 4.180 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.227 0.773 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.078 0.922 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.077 0.923 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.374 5.423 26.131 27.438 hybrid contribution -0.721 1.202 -1.036 1.743 sum -7.095 6.625 25.095 26.907 Atomic orbital electron populations 1.21746 0.95341 1.01106 1.00103 1.20903 0.95425 0.95835 0.95066 1.21749 1.00529 0.95943 1.00105 1.19098 0.96399 0.95252 0.89476 1.21221 1.31011 1.12024 0.90507 0.92228 1.25023 0.95367 0.95115 0.99101 1.69980 1.36996 1.23094 1.23293 0.86592 0.78585 0.79656 0.83473 1.19830 1.21162 1.21155 1.21467 0.98614 0.95597 0.81928 1.45360 1.56182 1.33140 1.04576 1.16026 0.80512 0.83018 0.80592 1.90912 1.42829 1.27682 1.86049 1.45077 1.57151 1.33390 1.04727 1.20622 0.99148 0.96727 0.79114 1.22973 0.95711 1.00851 0.98113 1.21684 1.03251 0.95294 0.90530 1.21451 1.02367 0.92085 1.02245 1.21325 1.01703 0.99449 0.94539 1.21748 0.90739 0.98204 1.00664 1.21345 0.99735 0.94593 1.01456 1.21459 0.99893 0.98281 0.98328 0.95323 0.91530 0.93399 0.93390 0.91529 0.95318 0.96305 0.96308 0.93117 0.92103 0.92105 0.77240 0.77279 0.91241 0.91554 0.87445 0.92129 0.91672 0.91829 0.92439 0.92141 0.92112 0.92091 0.92242 0.92487 0.91314 0.92293 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.15 0.30 -1.91 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.22 8.05 37.15 0.30 -1.92 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 5 C -0.51 -13.55 7.65 -34.44 -0.26 -13.81 16 6 H 0.06 1.53 5.68 -52.48 -0.30 1.23 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.52 13.29 55.43 0.74 -25.79 16 9 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 14 N -0.74 -10.99 4.96 -65.23 -0.32 -11.31 16 15 C 0.70 10.93 8.57 -86.92 -0.74 10.19 16 16 O -0.60 -11.98 16.34 5.29 0.09 -11.89 16 17 N -0.75 -8.42 4.97 -65.22 -0.32 -8.74 16 18 C 0.17 1.75 4.58 -4.04 -0.02 1.73 16 19 C -0.16 -1.23 5.09 -90.62 -0.46 -1.69 16 20 C -0.11 -0.76 2.70 -154.48 -0.42 -1.18 16 21 C -0.12 -0.91 8.28 37.16 0.31 -0.60 16 22 C -0.11 -0.66 8.80 37.16 0.33 -0.34 16 23 C -0.11 -0.81 2.70 -154.47 -0.42 -1.23 16 24 C -0.11 -0.69 8.88 37.16 0.33 -0.36 16 25 C -0.12 -0.98 8.01 37.16 0.30 -0.68 16 26 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 27 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.39 4.91 6.18 -40.82 -0.25 4.66 16 38 H 0.39 3.52 8.49 -40.82 -0.35 3.17 16 39 H 0.07 0.79 5.22 -51.93 -0.27 0.52 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 0.79 7.96 -51.93 -0.41 0.38 16 42 H 0.06 0.38 8.02 -51.93 -0.42 -0.03 16 43 H 0.06 0.51 5.61 -51.92 -0.29 0.22 16 44 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 45 H 0.06 0.32 7.78 -51.92 -0.40 -0.08 16 46 H 0.06 0.33 8.02 -51.93 -0.42 -0.09 16 47 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 48 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 49 H 0.06 0.34 8.02 -51.93 -0.42 -0.08 16 50 H 0.06 0.32 7.78 -51.93 -0.40 -0.08 16 51 H 0.07 0.66 5.08 -51.93 -0.26 0.40 16 52 H 0.06 0.44 7.85 -51.93 -0.41 0.04 16 53 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -31.28 402.07 -9.30 -40.58 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -9.74 Total: 3.27 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.77 Total: -8.41 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.09 Total: -45.85 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.28 -9.30 -40.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355824883.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.984 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds