Wall clock time and date at job start Fri Apr 10 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47542 * 2 1 4 4 C 1.53005 * 109.47062 * 239.99621 * 2 1 3 5 5 C 1.50697 * 109.46922 * 60.00269 * 4 2 1 6 6 H 1.08007 * 120.00123 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00165 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99652 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00155 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47307 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47238 * 119.99870 * 9 7 5 12 12 H 1.48501 * 109.47389 * 240.00171 * 9 7 5 13 13 C 1.53008 * 109.47190 * 120.00138 * 2 1 3 14 14 N 1.46498 * 109.46986 * 299.99674 * 13 2 1 15 15 C 1.34766 * 120.00124 * 180.02562 * 14 13 2 16 16 O 1.21585 * 120.00174 * 0.02562 * 15 14 13 17 17 N 1.34784 * 120.00094 * 180.02562 * 15 14 13 18 18 C 1.46498 * 119.99976 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47325 * 180.02562 * 18 17 15 20 20 C 1.52997 * 117.50186 * 140.22097 * 19 18 17 21 21 C 1.52997 * 117.49881 * 0.02562 * 20 19 18 22 22 C 1.52996 * 117.50025 * 145.02088 * 20 19 18 23 23 C 1.52993 * 117.49764 * 71.55836 * 19 18 17 24 24 C 1.53005 * 117.49959 * 214.98314 * 23 19 18 25 25 C 1.53001 * 117.50158 * 359.97438 * 23 19 18 26 26 H 1.09002 * 109.47099 * 300.00083 * 1 2 3 27 27 H 1.08997 * 109.47239 * 60.00318 * 1 2 3 28 28 H 1.09005 * 109.47343 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47529 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47086 * 300.00151 * 3 2 1 31 31 H 1.09002 * 109.46991 * 59.99851 * 3 2 1 32 32 H 1.08996 * 109.47171 * 179.97438 * 4 2 1 33 33 H 1.08995 * 109.47047 * 300.00259 * 4 2 1 34 34 H 0.97009 * 119.99866 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47094 * 179.97438 * 13 2 1 36 36 H 1.08995 * 109.46811 * 59.99466 * 13 2 1 37 37 H 0.97004 * 119.99870 * 359.97438 * 14 13 2 38 38 H 0.96997 * 119.99821 * 0.02562 * 17 15 14 39 39 H 1.09003 * 109.47364 * 300.00225 * 18 17 15 40 40 H 1.09002 * 109.47262 * 59.99519 * 18 17 15 41 41 H 1.09005 * 115.54548 * 285.89505 * 19 18 17 42 42 H 1.08991 * 109.47413 * 172.93077 * 21 20 19 43 43 H 1.09008 * 109.46866 * 292.93000 * 21 20 19 44 44 H 1.09000 * 109.47523 * 52.92373 * 21 20 19 45 45 H 1.09007 * 109.47104 * 8.60719 * 22 20 19 46 46 H 1.09000 * 109.47589 * 128.60545 * 22 20 19 47 47 H 1.08996 * 109.47393 * 248.61007 * 22 20 19 48 48 H 1.08998 * 109.47136 * 111.39200 * 24 23 19 49 49 H 1.09001 * 109.46719 * 231.39430 * 24 23 19 50 50 H 1.09001 * 109.46908 * 351.38961 * 24 23 19 51 51 H 1.08995 * 109.47107 * 8.60440 * 25 23 19 52 52 H 1.08994 * 109.47112 * 128.60734 * 25 23 19 53 53 H 1.08998 * 109.46889 * 248.60461 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5376 -0.0110 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6279 -1.5504 -3.8526 9 14 1.2479 0.3984 -5.2571 10 1 0.4225 1.5649 -4.8530 11 1 2.4026 0.8660 -6.0654 12 1 0.4235 -0.5355 -6.0656 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5774 -1.4788 3.7811 17 7 1.4280 0.1443 4.7700 18 6 1.7829 -0.3555 6.1005 19 6 1.1485 0.5391 7.1674 20 6 0.5682 -0.1432 8.4077 21 6 0.6672 -1.6679 8.4867 22 6 0.6886 0.5958 9.7420 23 6 -0.3677 0.4514 7.3524 24 6 -1.1111 1.7392 7.7128 25 6 -1.1336 -0.5237 6.4561 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1299 -0.7210 -1.2495 33 1 1.6765 -1.7490 -1.2492 34 1 2.8623 -1.8819 -4.7336 35 1 3.1299 -0.7217 1.2490 36 1 1.6765 -1.7489 1.2493 37 1 0.9943 0.7582 2.3564 38 1 0.8695 0.9323 4.6809 39 1 1.4146 -1.3749 6.2159 40 1 2.8668 -0.3457 6.2152 41 1 1.6164 1.5144 7.3019 42 1 0.3322 -2.0035 9.4680 43 1 0.0378 -2.1133 7.7161 44 1 1.7020 -1.9734 8.3319 45 1 1.0579 1.6061 9.5657 46 1 -0.2899 0.6449 10.2198 47 1 1.3835 0.0630 10.3910 48 1 -1.7360 2.0450 6.8737 49 1 -1.7374 1.5645 8.5876 50 1 -0.3894 2.5256 7.9339 51 1 -0.4259 -1.1379 5.8993 52 1 -1.7646 -1.1644 7.0721 53 1 -1.7560 0.0365 5.7583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355824883.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:29:04 Heat of formation + Delta-G solvation = -57.823544 kcal Electronic energy + Delta-G solvation = -26567.943485 eV Core-core repulsion = 23052.526715 eV Total energy + Delta-G solvation = -3515.416770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 310.236 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38632 -40.44932 -38.71159 -35.44389 -35.20257 -33.84722 -32.02404 -30.19927 -29.44598 -28.97983 -27.94095 -27.51883 -27.07145 -25.81588 -24.57728 -21.90398 -20.62800 -20.04370 -18.86748 -18.57583 -18.35469 -17.22389 -16.93936 -16.49884 -16.11036 -15.80953 -15.50163 -15.42626 -15.09737 -14.92237 -14.57749 -14.35603 -14.16231 -13.92534 -13.89219 -13.58991 -13.28434 -13.19491 -13.06396 -12.89527 -12.87627 -12.73194 -12.68684 -12.63055 -12.57013 -12.32759 -12.21512 -12.01719 -11.92877 -11.62392 -11.52058 -11.46473 -10.98036 -10.83594 -10.51147 -10.49735 -10.35419 -10.15068 -9.68086 -8.12852 -6.20507 1.42587 1.43457 1.55275 1.69878 2.19761 2.45095 2.68585 3.21675 3.38887 3.57506 3.72560 3.83782 3.99965 4.11404 4.15596 4.22274 4.24898 4.30248 4.51697 4.61888 4.70984 4.73999 4.75719 4.76540 4.81919 4.83435 4.94837 4.98979 4.99854 5.07700 5.09523 5.12918 5.13322 5.14403 5.16543 5.19374 5.27577 5.41644 5.42698 5.43451 5.50364 5.51959 5.54090 5.55920 5.58469 5.61554 5.82484 5.91461 6.05821 6.32416 6.94780 7.16156 7.47101 7.63252 8.99944 Molecular weight = 310.24amu Principal moments of inertia in cm(-1) A = 0.031290 B = 0.002309 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.653299 B =12123.650581 C =12481.930460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.063 4.063 3 C -0.120 4.120 4 C 0.038 3.962 5 C -0.510 4.510 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.939 5.939 9 Si 0.960 3.040 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.162 3.838 14 N -0.724 5.724 15 C 0.697 3.303 16 O -0.644 6.644 17 N -0.724 5.724 18 C 0.170 3.830 19 C -0.158 4.158 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.122 4.122 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.056 0.944 31 H 0.069 0.931 32 H -0.015 1.015 33 H -0.014 1.014 34 H 0.259 0.741 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.409 0.591 38 H 0.410 0.590 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.119 0.881 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.048 0.952 52 H 0.061 0.939 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 9.347 27.743 30.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.001 3.999 5 C -0.548 4.548 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.037 3.963 14 N -0.380 5.380 15 C 0.397 3.603 16 O -0.526 6.526 17 N -0.381 5.381 18 C 0.046 3.954 19 C -0.176 4.176 20 C -0.107 4.107 21 C -0.183 4.183 22 C -0.168 4.168 23 C -0.108 4.108 24 C -0.169 4.169 25 C -0.179 4.179 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.004 0.996 33 H 0.004 0.996 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.247 0.753 38 H 0.246 0.754 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.137 0.863 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.067 0.933 52 H 0.080 0.920 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.435 8.359 27.732 30.167 hybrid contribution -0.077 0.243 -1.445 1.467 sum -8.513 8.603 26.287 28.939 Atomic orbital electron populations 1.21678 0.93523 1.00910 1.01614 1.20695 0.96737 0.96276 0.92602 1.21682 0.99852 0.94618 1.01618 1.18987 0.94295 0.94238 0.92399 1.21616 1.30217 1.12018 0.90978 0.90829 1.25974 0.95744 0.95921 1.02802 1.70137 1.38849 1.25070 1.23990 0.85472 0.78014 0.78812 0.79188 1.17942 1.21133 1.21107 1.21029 0.97341 0.94899 0.82993 1.44991 1.56224 1.33341 1.03442 1.16178 0.80162 0.82631 0.81365 1.90889 1.45012 1.29956 1.86731 1.44887 1.56156 1.33131 1.03880 1.20629 0.98574 0.96987 0.79237 1.22879 0.96257 1.00800 0.97698 1.21785 1.02783 0.95085 0.91042 1.21454 1.01718 0.92577 1.02555 1.21330 1.02264 0.99549 0.93642 1.21781 0.90145 0.98604 1.00241 1.21347 0.99851 0.93854 1.01834 1.21432 0.99601 0.98341 0.98486 0.91177 0.92529 0.94534 0.94548 0.92522 0.91179 0.99613 0.99595 0.93221 0.94094 0.94065 0.75302 0.75374 0.92430 0.92916 0.86319 0.91063 0.92546 0.92638 0.91820 0.91393 0.91912 0.91747 0.91688 0.91761 0.93262 0.92034 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.01 8.05 71.98 0.58 -3.43 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.40 16 3 C -0.12 -4.04 8.05 71.98 0.58 -3.46 16 4 C 0.04 1.97 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.37 7.65 25.60 0.20 -27.18 16 6 H 0.07 3.68 5.68 -2.91 -0.02 3.67 16 7 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 8 N -0.94 -57.51 13.29 21.45 0.28 -57.22 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 10 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 C 0.16 5.98 4.56 86.38 0.39 6.38 16 14 N -0.72 -20.52 4.96 -478.54 -2.37 -22.89 16 15 C 0.70 21.34 8.57 179.06 1.53 22.88 16 16 O -0.64 -26.40 16.34 -3.98 -0.07 -26.46 16 17 N -0.72 -15.24 4.97 -478.53 -2.38 -17.61 16 18 C 0.17 3.41 4.58 86.38 0.40 3.81 16 19 C -0.16 -2.15 5.09 -10.80 -0.05 -2.21 16 20 C -0.11 -1.31 2.70 -52.16 -0.14 -1.45 16 21 C -0.13 -1.75 8.28 71.98 0.60 -1.15 16 22 C -0.11 -1.02 8.80 71.98 0.63 -0.39 16 23 C -0.11 -1.29 2.70 -52.16 -0.14 -1.43 16 24 C -0.11 -1.00 8.88 71.98 0.64 -0.36 16 25 C -0.12 -1.73 8.01 71.98 0.58 -1.16 16 26 H 0.07 1.75 6.86 -2.39 -0.02 1.74 16 27 H 0.06 2.02 6.62 -2.39 -0.02 2.00 16 28 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 2.02 6.62 -2.39 -0.02 2.01 16 31 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 32 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 34 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 8.82 6.18 -92.71 -0.57 8.25 16 38 H 0.41 6.14 8.49 -92.71 -0.79 5.35 16 39 H 0.06 1.33 5.22 -2.39 -0.01 1.31 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.12 1.41 7.96 -2.38 -0.02 1.39 16 42 H 0.07 0.82 8.02 -2.39 -0.02 0.80 16 43 H 0.06 0.87 5.61 -2.38 -0.01 0.86 16 44 H 0.05 0.85 7.84 -2.39 -0.02 0.83 16 45 H 0.06 0.52 7.78 -2.38 -0.02 0.50 16 46 H 0.07 0.54 8.02 -2.39 -0.02 0.52 16 47 H 0.06 0.56 8.09 -2.39 -0.02 0.54 16 48 H 0.06 0.55 7.92 -2.39 -0.02 0.53 16 49 H 0.06 0.53 8.02 -2.39 -0.02 0.51 16 50 H 0.06 0.50 7.78 -2.39 -0.02 0.48 16 51 H 0.05 0.90 5.08 -2.39 -0.01 0.89 16 52 H 0.06 0.84 7.85 -2.39 -0.02 0.82 16 53 H 0.07 0.86 7.92 -2.39 -0.02 0.84 16 Total: -1.00 -70.56 402.07 3.36 -67.20 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.47 Total: 20.71 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 6.34 Total: -9.45 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -4.47 Total: -97.73 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.07 Total: -26.46 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -70.56 3.36 -67.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355824883.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.374 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds